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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 437 |
| AccB1I | GGYRCC | 1 cut(s) | 226 |
| AccI | GTMKAC | 2 cut(s) | 274, 707 |
| AccII | CGCG | 1 cut(s) | 537 |
| AciI | CCGC | 2 cut(s) | 367, 526 |
| AclWI | GGATC | 3 cut(s) | 119, 132, 617 |
| AcoI | YGGCCR | 1 cut(s) | 625 |
| AfaI | GTAC | 3 cut(s) | 71, 186, 673 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 79, 630, 634 |
| AgsI | TTSAA | 5 cut(s) | 19, 162, 374, 697, 725 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 64 |
| AjnI | CCWGG | 2 cut(s) | 462, 587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 464, 496 |
| AluBI | AGCT | 5 cut(s) | 339, 433, 450, 621, 738 |
| AluI | AGCT | 5 cut(s) | 339, 433, 450, 621, 738 |
| Alw26I | GTCTC | 2 cut(s) | 145, 516 |
| AlwI | GGATC | 3 cut(s) | 119, 132, 617 |
| Ama87I | CYCGRG | 1 cut(s) | 552 |
| AoxI | GGCC | 2 cut(s) | 465, 625 |
| ApeKI | GCWGC | 1 cut(s) | 618 |
| AspLEI | GCGC | 1 cut(s) | 654 |
| AspS9I | GGNCC | 2 cut(s) | 82, 466 |
| AvaI | CYCGRG | 1 cut(s) | 552 |
| AvaII | GGWCC | 1 cut(s) | 82 |
| BamHI | GGATCC | 1 cut(s) | 124 |
| BanI | GGYRCC | 1 cut(s) | 226 |
| BauI | CACGAG | 1 cut(s) | 310 |
| BbvI | GCAGC | 1 cut(s) | 630 |
| BccI | CCATC | 3 cut(s) | 291, 419, 566 |
| BciT130I | CCWGG | 2 cut(s) | 464, 589 |
| BcoDI | GTCTC | 2 cut(s) | 145, 516 |
| BisI | GCNGC | 1 cut(s) | 619 |
| BlsI | GCNGC | 1 cut(s) | 620 |
| Bme1390I | CCNGG | 2 cut(s) | 464, 589 |
| Bme18I | GGWCC | 1 cut(s) | 82 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 64 |
| BmeT110I | CYCGRG | 1 cut(s) | 552 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 466 |
| BmiI | GGNNCC | 3 cut(s) | 126, 228, 409 |
| BmrFI | CCNGG | 2 cut(s) | 464, 589 |
| BmrI | ACTGGG | 1 cut(s) | 234 |
| BmsI | GCATC | 3 cut(s) | 183, 299, 685 |
| BmuI | ACTGGG | 1 cut(s) | 234 |
| BpuEI | CTTGAG | 1 cut(s) | 107 |
| BsaI | GGTCTC | 1 cut(s) | 516 |
| BsaWI | WCCGGW | 1 cut(s) | 702 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 740 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 79, 630, 634 |
| Bse118I | RCCGGY | 1 cut(s) | 710 |
| Bse1I | ACTGG | 1 cut(s) | 240 |
| BseBI | CCWGG | 2 cut(s) | 464, 589 |
| BseGI | GGATG | 3 cut(s) | 198, 411, 679 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 79, 630, 634 |
| BseMII | CTCAG | 1 cut(s) | 659 |
| BseNI | ACTGG | 1 cut(s) | 240 |
| BseRI | GAGGAG | 2 cut(s) | 653, 674 |
| BseXI | GCAGC | 1 cut(s) | 630 |
| BsgI | GTGCAG | 1 cut(s) | 114 |
| Bsh1236I | CGCG | 1 cut(s) | 537 |
| Bsh1285I | CGRYCG | 2 cut(s) | 707, 711 |
| BshFI | GGCC | 2 cut(s) | 467, 627 |
| BshNI | GGYRCC | 1 cut(s) | 226 |
| BsiEI | CGRYCG | 2 cut(s) | 707, 711 |
| BsiHKCI | CYCGRG | 1 cut(s) | 552 |
| BsiSI | CCGG | 3 cut(s) | 624, 703, 711 |
| BslFI | GGGAC | 1 cut(s) | 71 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 79, 630, 634 |
| BsmAI | GTCTC | 2 cut(s) | 145, 516 |
| BsmBI | CGTCTC | 1 cut(s) | 145 |
| BsmFI | GGGAC | 1 cut(s) | 71 |
| BsnI | GGCC | 2 cut(s) | 467, 627 |
| Bso31I | GGTCTC | 1 cut(s) | 516 |
| BsoBI | CYCGRG | 1 cut(s) | 552 |
| Bsp143I | GATC | 4 cut(s) | 124, 538, 609, 685 |
| Bsp68I | TCGCGA | 1 cut(s) | 537 |
| BspACI | CCGC | 2 cut(s) | 367, 526 |
| BspANI | GGCC | 2 cut(s) | 467, 627 |
| BspCNI | CTCAG | 1 cut(s) | 660 |
| BspFNI | CGCG | 1 cut(s) | 537 |
| BspLI | GGNNCC | 3 cut(s) | 126, 228, 409 |
| BspPI | GGATC | 3 cut(s) | 119, 132, 617 |
| BspT107I | GGYRCC | 1 cut(s) | 226 |
| BspTNI | GGTCTC | 1 cut(s) | 516 |
| BsrFI | RCCGGY | 1 cut(s) | 710 |
| BsrI | ACTGG | 1 cut(s) | 240 |
| BssAI | RCCGGY | 1 cut(s) | 710 |
| BssMI | GATC | 4 cut(s) | 124, 538, 609, 685 |
| BssSI | CACGAG | 1 cut(s) | 310 |
| Bst2BI | CACGAG | 1 cut(s) | 310 |
| Bst2UI | CCWGG | 2 cut(s) | 464, 589 |
| Bst4CI | ACNGT | 3 cut(s) | 47, 207, 401 |
| Bst6I | CTCTTC | 1 cut(s) | 323 |
| BstDEI | CTNAG | 1 cut(s) | 668 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 77 |
| BstF5I | GGATG | 3 cut(s) | 198, 411, 679 |
| BstFNI | CGCG | 1 cut(s) | 537 |
| BstHHI | GCGC | 1 cut(s) | 654 |
| BstKTI | GATC | 4 cut(s) | 127, 541, 612, 688 |
| BstMAI | GTCTC | 2 cut(s) | 145, 516 |
| BstMBI | GATC | 4 cut(s) | 124, 538, 609, 685 |
| BstMCI | CGRYCG | 2 cut(s) | 707, 711 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 534, 624, 651 |
| BstNI | CCWGG | 2 cut(s) | 464, 589 |
| BstSCI | CCNGG | 2 cut(s) | 462, 587 |
| BstUI | CGCG | 1 cut(s) | 537 |
| BstV1I | GCAGC | 1 cut(s) | 630 |
| BstX2I | RGATCY | 2 cut(s) | 124, 609 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 588 |
| BstYI | RGATCY | 2 cut(s) | 124, 609 |
| BsuRI | GGCC | 2 cut(s) | 467, 627 |
| BtsCI | GGATG | 3 cut(s) | 198, 411, 679 |
| BtsIMutI | CAGTG | 4 cut(s) | 247, 406, 558, 665 |
| BtuMI | TCGCGA | 1 cut(s) | 537 |
| CfoI | GCGC | 1 cut(s) | 654 |
| Cfr10I | RCCGGY | 1 cut(s) | 710 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 466 |
| Csp6I | GTAC | 3 cut(s) | 70, 185, 672 |
| CviAII | CATG | 3 cut(s) | 100, 200, 278 |
| CviJI | RGCY | 9 cut(s) | 339, 386, 433, 450, 467, 621, 627, 714, 738 |
| CviKI_1 | RGCY | 9 cut(s) | 339, 386, 433, 450, 467, 621, 627, 714, 738 |
| CviQI | GTAC | 3 cut(s) | 70, 185, 672 |
| DdeI | CTNAG | 1 cut(s) | 668 |
| DpnI | GATC | 4 cut(s) | 126, 540, 611, 687 |
| DpnII | GATC | 4 cut(s) | 124, 538, 609, 685 |
| DriI | GACNNNNNGTC | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 625 |
| Eam1104I | CTCTTC | 1 cut(s) | 323 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 64 |
| EarI | CTCTTC | 1 cut(s) | 323 |
| Eco31I | GGTCTC | 1 cut(s) | 516 |
| Eco47I | GGWCC | 1 cut(s) | 82 |
| Eco88I | CYCGRG | 1 cut(s) | 552 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 77 |
| EcoO109I | RGGNCCY | 1 cut(s) | 82 |
| EcoRII | CCWGG | 2 cut(s) | 462, 587 |
| Esp3I | CGTCTC | 1 cut(s) | 145 |
| FaeI | CATG | 3 cut(s) | 103, 203, 281 |
| FaqI | GGGAC | 1 cut(s) | 71 |
| FatI | CATG | 3 cut(s) | 99, 199, 277 |
| FblI | GTMKAC | 2 cut(s) | 274, 707 |
| Fnu4HI | GCNGC | 1 cut(s) | 619 |
| FokI | GGATG | 3 cut(s) | 205, 398, 666 |
| Fsp4HI | GCNGC | 1 cut(s) | 619 |
| GlaI | GCGC | 1 cut(s) | 653 |
| GluI | GCNGC | 1 cut(s) | 619 |
| HaeIII | GGCC | 2 cut(s) | 467, 627 |
| HapII | CCGG | 3 cut(s) | 624, 703, 711 |
| HhaI | GCGC | 1 cut(s) | 654 |
| Hin1II | CATG | 3 cut(s) | 103, 203, 281 |
| Hin6I | GCGC | 1 cut(s) | 652 |
| HinP1I | GCGC | 1 cut(s) | 652 |
| HincII | GTYRAC | 1 cut(s) | 708 |
| HindII | GTYRAC | 1 cut(s) | 708 |
| HindIII | AAGCTT | 1 cut(s) | 431 |
| HinfI | GANTC | 2 cut(s) | 59, 158 |
| HpaII | CCGG | 3 cut(s) | 624, 703, 711 |
| Hpy166II | GTNNAC | 3 cut(s) | 175, 275, 708 |
| Hpy188I | TCNGA | 5 cut(s) | 97, 157, 211, 521, 605 |
| Hpy188III | TCNNGA | 4 cut(s) | 294, 536, 569, 683 |
| Hpy8I | GTNNAC | 3 cut(s) | 175, 275, 708 |
| HpyAV | CCTTC | 4 cut(s) | 13, 600, 628, 719 |
| HpyCH4III | ACNGT | 3 cut(s) | 47, 207, 401 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 131, 196, 245, 547 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 534, 624, 651 |
| HpyF3I | CTNAG | 1 cut(s) | 668 |
| Hsp92II | CATG | 3 cut(s) | 103, 203, 281 |
| HspAI | GCGC | 1 cut(s) | 652 |
| Kzo9I | GATC | 4 cut(s) | 124, 538, 609, 685 |
| LmnI | GCTCC | 1 cut(s) | 626 |
| Lsp1109I | GCAGC | 1 cut(s) | 630 |
| LweI | GCATC | 3 cut(s) | 183, 299, 685 |
| MaeIII | GTNAC | 1 cut(s) | 556 |
| MalI | GATC | 4 cut(s) | 126, 540, 611, 687 |
| MboI | GATC | 4 cut(s) | 124, 538, 609, 685 |
| MboII | GAAGA | 1 cut(s) | 340 |
| MflI | RGATCY | 2 cut(s) | 124, 609 |
| MluCI | AATT | 8 cut(s) | 14, 178, 251, 264, 354, 393, 438, 741 |
| MlyI | GAGTC | 1 cut(s) | 53 |
| MseI | TTAA | 2 cut(s) | 258, 740 |
| MslI | CAYNNNNRTG | 1 cut(s) | 295 |
| MspI | CCGG | 3 cut(s) | 624, 703, 711 |
| MspR9I | CCNGG | 2 cut(s) | 464, 589 |
| MvaI | CCWGG | 2 cut(s) | 464, 589 |
| MvnI | CGCG | 1 cut(s) | 537 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 534, 624, 651 |
| NdeII | GATC | 4 cut(s) | 124, 538, 609, 685 |
| NlaIII | CATG | 3 cut(s) | 103, 203, 281 |
| NlaIV | GGNNCC | 3 cut(s) | 126, 228, 409 |
| NmuCI | GTSAC | 1 cut(s) | 556 |
| NruI | TCGCGA | 1 cut(s) | 537 |
| PfeI | GAWTC | 1 cut(s) | 158 |
| PkrI | GCNGC | 1 cut(s) | 620 |
| PleI | GAGTC | 1 cut(s) | 53 |
| PpsI | GAGTC | 1 cut(s) | 53 |
| PpuMI | RGGWCCY | 1 cut(s) | 82 |
| PsiI | TTATAA | 1 cut(s) | 437 |
| Psp5II | RGGWCCY | 1 cut(s) | 82 |
| Psp6I | CCWGG | 2 cut(s) | 462, 587 |
| PspGI | CCWGG | 2 cut(s) | 462, 587 |
| PspN4I | GGNNCC | 3 cut(s) | 126, 228, 409 |
| PspPI | GGNCC | 2 cut(s) | 82, 466 |
| PspPPI | RGGWCCY | 1 cut(s) | 82 |
| PsuI | RGATCY | 2 cut(s) | 124, 609 |
| RruI | TCGCGA | 1 cut(s) | 537 |
| RsaI | GTAC | 3 cut(s) | 71, 186, 673 |
| RsaNI | GTAC | 3 cut(s) | 70, 185, 672 |
| RseI | CAYNNNNRTG | 1 cut(s) | 295 |
| SalI | GTCGAC | 1 cut(s) | 706 |
| SaqAI | TTAA | 2 cut(s) | 258, 740 |
| SatI | GCNGC | 1 cut(s) | 619 |
| Sau3AI | GATC | 4 cut(s) | 124, 538, 609, 685 |
| Sau96I | GGNCC | 2 cut(s) | 82, 466 |
| SchI | GAGTC | 1 cut(s) | 53 |
| ScrFI | CCNGG | 2 cut(s) | 464, 589 |
| SfaNI | GCATC | 3 cut(s) | 183, 299, 685 |
| SinI | GGWCC | 1 cut(s) | 82 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 295 |
| SmlI | CTYRAG | 1 cut(s) | 86 |
| SmoI | CTYRAG | 1 cut(s) | 86 |
| Sse9I | AATT | 8 cut(s) | 14, 178, 251, 264, 354, 393, 438, 741 |
| SsiI | CCGC | 2 cut(s) | 367, 526 |
| StyD4I | CCNGG | 2 cut(s) | 462, 587 |
| TaaI | ACNGT | 3 cut(s) | 47, 207, 401 |
| TaqI | TCGA | 3 cut(s) | 326, 707, 758 |
| TasI | AATT | 8 cut(s) | 14, 178, 251, 264, 354, 393, 438, 741 |
| TatI | WGTACW | 1 cut(s) | 184 |
| TfiI | GAWTC | 1 cut(s) | 158 |
| Tru1I | TTAA | 2 cut(s) | 258, 740 |
| Tru9I | TTAA | 2 cut(s) | 258, 740 |
| TscAI | CASTG | 4 cut(s) | 247, 406, 565, 672 |
| TseFI | GTSAC | 1 cut(s) | 556 |
| TseI | GCWGC | 1 cut(s) | 618 |
| Tsp45I | GTSAC | 1 cut(s) | 556 |
| TspDTI | ATGAA | 1 cut(s) | 29 |
| TspGWI | ACGGA | 1 cut(s) | 205 |
| TspRI | CASTG | 4 cut(s) | 247, 406, 565, 672 |
| VpaK11BI | GGWCC | 1 cut(s) | 82 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 77 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 592 |
| XmiI | GTMKAC | 2 cut(s) | 274, 707 |