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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 4 cut(s) | 64, 124, 424, 1064 |
| AccB1I | GGYRCC | 5 cut(s) | 64, 124, 424, 1064, 1125 |
| AccI | GTMKAC | 3 cut(s) | 5, 1227, 1491 |
| AccII | CGCG | 1 cut(s) | 1191 |
| AciI | CCGC | 3 cut(s) | 35, 1189, 1191 |
| AclWI | GGATC | 1 cut(s) | 1734 |
| AcoI | YGGCCR | 2 cut(s) | 1264, 1652 |
| AcsI | RAATTY | 2 cut(s) | 44, 91 |
| AcvI | CACGTG | 1 cut(s) | 235 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 61, 74, 185, 215, 356, 1195, 1326 |
| AflIII | ACRYGT | 1 cut(s) | 1369 |
| AgsI | TTSAA | 1 cut(s) | 1720 |
| AhlI | ACTAGT | 1 cut(s) | 1172 |
| AjnI | CCWGG | 2 cut(s) | 178, 769 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 76, 108 |
| AluBI | AGCT | 3 cut(s) | 1107, 1242, 1583 |
| AluI | AGCT | 3 cut(s) | 1107, 1242, 1583 |
| Alw26I | GTCTC | 1 cut(s) | 1493 |
| AlwI | GGATC | 1 cut(s) | 1734 |
| Ama87I | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| AoxI | GGCC | 7 cut(s) | 168, 189, 247, 1116, 1184, 1264, 1652 |
| ApaI | GGGCCC | 3 cut(s) | 193, 1120, 1188 |
| ApeKI | GCWGC | 1 cut(s) | 1507 |
| ApoI | RAATTY | 2 cut(s) | 44, 91 |
| Asp718I | GGTACC | 4 cut(s) | 64, 124, 424, 1064 |
| AspLEI | GCGC | 1 cut(s) | 749 |
| AspS9I | GGNCC | 8 cut(s) | 168, 189, 190, 247, 1116, 1117, 1184, 1185 |
| AvaI | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| BaeGI | GKGCMC | 4 cut(s) | 193, 1120, 1128, 1188 |
| BanI | GGYRCC | 5 cut(s) | 64, 124, 424, 1064, 1125 |
| BanII | GRGCYC | 3 cut(s) | 193, 1120, 1188 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1132, 1164, 1572, 1604 |
| BauI | CACGAG | 1 cut(s) | 140 |
| BbrPI | CACGTG | 1 cut(s) | 235 |
| BbvI | GCAGC | 1 cut(s) | 1519 |
| BccI | CCATC | 7 cut(s) | 161, 285, 322, 509, 592, 666, 1102 |
| BceAI | ACGGC | 1 cut(s) | 1251 |
| BciT130I | CCWGG | 2 cut(s) | 180, 771 |
| BciVI | GTATCC | 1 cut(s) | 198 |
| BcoDI | GTCTC | 1 cut(s) | 1493 |
| BcuI | ACTAGT | 1 cut(s) | 1172 |
| BfaI | CTAG | 7 cut(s) | 437, 474, 557, 594, 1104, 1173, 1439 |
| BfuI | GTATCC | 1 cut(s) | 198 |
| BisI | GCNGC | 3 cut(s) | 36, 1192, 1508 |
| BlsI | GCNGC | 3 cut(s) | 37, 1193, 1509 |
| BmeT110I | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| BmgT120I | GGNCC | 8 cut(s) | 168, 189, 190, 247, 1116, 1117, 1184, 1185 |
| BmrI | ACTGGG | 1 cut(s) | 1353 |
| BmuI | ACTGGG | 1 cut(s) | 1353 |
| BpuEI | CTTGAG | 4 cut(s) | 208, 697, 842, 1024 |
| BsaAI | YACGTR | 1 cut(s) | 235 |
| BsaI | GGTCTC | 1 cut(s) | 1493 |
| BsaWI | WCCGGW | 1 cut(s) | 201 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 61, 74, 185, 215, 356, 1195, 1326 |
| Bse1I | ACTGG | 1 cut(s) | 1348 |
| Bse3DI | GCAATG | 1 cut(s) | 1668 |
| BseBI | CCWGG | 2 cut(s) | 180, 771 |
| BseGI | GGATG | 1 cut(s) | 1633 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 61, 74, 185, 215, 356, 1195, 1326 |
| BseMI | GCAATG | 1 cut(s) | 1668 |
| BseNI | ACTGG | 1 cut(s) | 1348 |
| BseRI | GAGGAG | 1 cut(s) | 1373 |
| BseSI | GKGCMC | 4 cut(s) | 193, 1120, 1128, 1188 |
| BseX3I | CGGCCG | 1 cut(s) | 1264 |
| BseXI | GCAGC | 1 cut(s) | 1519 |
| Bsh1236I | CGCG | 1 cut(s) | 1191 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1267 |
| BshFI | GGCC | 7 cut(s) | 170, 191, 249, 1118, 1186, 1266, 1654 |
| BshNI | GGYRCC | 5 cut(s) | 64, 124, 424, 1064, 1125 |
| BsiEI | CGRYCG | 1 cut(s) | 1267 |
| BsiHKCI | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| BslFI | GGGAC | 3 cut(s) | 1130, 1183, 1651 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 61, 74, 185, 215, 356, 1195, 1326 |
| BsmAI | GTCTC | 1 cut(s) | 1493 |
| BsmFI | GGGAC | 3 cut(s) | 1130, 1183, 1651 |
| BsnI | GGCC | 7 cut(s) | 170, 191, 249, 1118, 1186, 1266, 1654 |
| Bso31I | GGTCTC | 1 cut(s) | 1493 |
| BsoBI | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| Bsp120I | GGGCCC | 3 cut(s) | 189, 1116, 1184 |
| Bsp1286I | GDGCHC | 4 cut(s) | 193, 1120, 1128, 1188 |
| Bsp143I | GATC | 1 cut(s) | 1726 |
| Bsp19I | CCATGG | 2 cut(s) | 1251, 1519 |
| BspACI | CCGC | 3 cut(s) | 35, 1189, 1191 |
| BspANI | GGCC | 7 cut(s) | 170, 191, 249, 1118, 1186, 1266, 1654 |
| BspFNI | CGCG | 1 cut(s) | 1191 |
| BspHI | TCATGA | 2 cut(s) | 1110, 1576 |
| BspPI | GGATC | 1 cut(s) | 1734 |
| BspT107I | GGYRCC | 5 cut(s) | 64, 124, 424, 1064, 1125 |
| BspTNI | GGTCTC | 1 cut(s) | 1493 |
| BsrDI | GCAATG | 1 cut(s) | 1668 |
| BsrI | ACTGG | 1 cut(s) | 1348 |
| BssMI | GATC | 1 cut(s) | 1726 |
| BssNAI | GTATAC | 1 cut(s) | 6 |
| BssSI | CACGAG | 1 cut(s) | 140 |
| BssT1I | CCWWGG | 4 cut(s) | 83, 1251, 1519, 1689 |
| Bst1107I | GTATAC | 1 cut(s) | 6 |
| Bst2BI | CACGAG | 1 cut(s) | 140 |
| Bst2UI | CCWGG | 2 cut(s) | 180, 771 |
| Bst4CI | ACNGT | 2 cut(s) | 1516, 1621 |
| Bst6I | CTCTTC | 2 cut(s) | 916, 1350 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1685 |
| BstBAI | YACGTR | 1 cut(s) | 235 |
| BstC8I | GCNNGC | 1 cut(s) | 1317 |
| BstDSI | CCRYGG | 3 cut(s) | 1189, 1251, 1519 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 354 |
| BstF5I | GGATG | 1 cut(s) | 1633 |
| BstFNI | CGCG | 1 cut(s) | 1191 |
| BstHHI | GCGC | 1 cut(s) | 749 |
| BstKTI | GATC | 1 cut(s) | 1729 |
| BstMAI | GTCTC | 1 cut(s) | 1493 |
| BstMBI | GATC | 1 cut(s) | 1726 |
| BstMCI | CGRYCG | 1 cut(s) | 1267 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 1200, 1685 |
| BstNI | CCWGG | 2 cut(s) | 180, 771 |
| BstNSI | RCATGY | 3 cut(s) | 1219, 1319, 1373 |
| BstSLI | GKGCMC | 4 cut(s) | 193, 1120, 1128, 1188 |
| BstUI | CGCG | 1 cut(s) | 1191 |
| BstV1I | GCAGC | 1 cut(s) | 1519 |
| BstX2I | RGATCY | 1 cut(s) | 1726 |
| BstYI | RGATCY | 1 cut(s) | 1726 |
| BstZ17I | GTATAC | 1 cut(s) | 6 |
| BstZI | CGGCCG | 1 cut(s) | 1264 |
| BsuI | GTATCC | 1 cut(s) | 198 |
| BsuRI | GGCC | 7 cut(s) | 170, 191, 249, 1118, 1186, 1266, 1654 |
| BtgI | CCRYGG | 3 cut(s) | 1189, 1251, 1519 |
| BtsCI | GGATG | 1 cut(s) | 1633 |
| Cac8I | GCNNGC | 1 cut(s) | 1317 |
| CciI | TCATGA | 2 cut(s) | 1110, 1576 |
| CfoI | GCGC | 1 cut(s) | 749 |
| Cfr13I | GGNCC | 8 cut(s) | 168, 189, 190, 247, 1116, 1117, 1184, 1185 |
| Cfr42I | CCGCGG | 1 cut(s) | 1192 |
| Cfr9I | CCCGGG | 2 cut(s) | 164, 1120 |
| CsiI | ACCWGGT | 1 cut(s) | 178 |
| DpnI | GATC | 1 cut(s) | 1728 |
| DpnII | GATC | 1 cut(s) | 1726 |
| EaeI | YGGCCR | 2 cut(s) | 1264, 1652 |
| EagI | CGGCCG | 1 cut(s) | 1264 |
| Eam1104I | CTCTTC | 2 cut(s) | 916, 1350 |
| EarI | CTCTTC | 2 cut(s) | 916, 1350 |
| EclXI | CGGCCG | 1 cut(s) | 1264 |
| Eco130I | CCWWGG | 4 cut(s) | 83, 1251, 1519, 1689 |
| Eco24I | GRGCYC | 3 cut(s) | 193, 1120, 1188 |
| Eco31I | GGTCTC | 1 cut(s) | 1493 |
| Eco52I | CGGCCG | 1 cut(s) | 1264 |
| Eco72I | CACGTG | 1 cut(s) | 235 |
| Eco88I | CYCGRG | 4 cut(s) | 55, 164, 429, 1120 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 354 |
| EcoO109I | RGGNCCY | 4 cut(s) | 189, 1116, 1117, 1185 |
| EcoRII | CCWGG | 2 cut(s) | 178, 769 |
| EcoT14I | CCWWGG | 4 cut(s) | 83, 1251, 1519, 1689 |
| EcoT22I | ATGCAT | 1 cut(s) | 1221 |
| EcoT38I | GRGCYC | 3 cut(s) | 193, 1120, 1188 |
| ErhI | CCWWGG | 4 cut(s) | 83, 1251, 1519, 1689 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1293, 1325 |
| FaqI | GGGAC | 3 cut(s) | 1130, 1183, 1651 |
| FauI | CCCGC | 1 cut(s) | 1196 |
| FauNDI | CATATG | 1 cut(s) | 10 |
| FblI | GTMKAC | 3 cut(s) | 5, 1227, 1491 |
| Fnu4HI | GCNGC | 3 cut(s) | 36, 1192, 1508 |
| FokI | GGATG | 1 cut(s) | 1640 |
| FriOI | GRGCYC | 3 cut(s) | 193, 1120, 1188 |
| Fsp4HI | GCNGC | 3 cut(s) | 36, 1192, 1508 |
| FspBI | CTAG | 7 cut(s) | 437, 474, 557, 594, 1104, 1173, 1439 |
| GlaI | GCGC | 1 cut(s) | 748 |
| GluI | GCNGC | 3 cut(s) | 36, 1192, 1508 |
| HaeIII | GGCC | 7 cut(s) | 170, 191, 249, 1118, 1186, 1266, 1654 |
| HhaI | GCGC | 1 cut(s) | 749 |
| Hin6I | GCGC | 1 cut(s) | 747 |
| HinP1I | GCGC | 1 cut(s) | 747 |
| HincII | GTYRAC | 1 cut(s) | 1492 |
| HindII | GTYRAC | 1 cut(s) | 1492 |
| HindIII | AAGCTT | 1 cut(s) | 1581 |
| HinfI | GANTC | 3 cut(s) | 136, 1143, 1448 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 1228, 1288, 1492 |
| Hpy188III | TCNNGA | 3 cut(s) | 140, 1111, 1577 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 1228, 1288, 1492 |
| HpyCH4III | ACNGT | 2 cut(s) | 1516, 1621 |
| HpyCH4IV | ACGT | 2 cut(s) | 234, 1245 |
| HpyCH4V | TGCA | 5 cut(s) | 99, 1219, 1315, 1434, 1679 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 1200, 1685 |
| HpySE526I | ACGT | 2 cut(s) | 234, 1245 |
| HspAI | GCGC | 1 cut(s) | 747 |
| KpnI | GGTACC | 4 cut(s) | 68, 128, 428, 1068 |
| KspI | CCGCGG | 1 cut(s) | 1192 |
| Kzo9I | GATC | 1 cut(s) | 1726 |
| Lsp1109I | GCAGC | 1 cut(s) | 1519 |
| MabI | ACCWGGT | 1 cut(s) | 178 |
| MaeI | CTAG | 7 cut(s) | 437, 474, 557, 594, 1104, 1173, 1439 |
| MaeII | ACGT | 2 cut(s) | 234, 1245 |
| MaeIII | GTNAC | 5 cut(s) | 137, 235, 1552, 1615, 1693 |
| MalI | GATC | 1 cut(s) | 1728 |
| MboI | GATC | 1 cut(s) | 1726 |
| MboII | GAAGA | 2 cut(s) | 903, 1367 |
| MflI | RGATCY | 1 cut(s) | 1726 |
| MhlI | GDGCHC | 4 cut(s) | 193, 1120, 1128, 1188 |
| MluCI | AATT | 6 cut(s) | 20, 44, 91, 1337, 1700, 1744 |
| MlyI | GAGTC | 2 cut(s) | 145, 1152 |
| Mph1103I | ATGCAT | 1 cut(s) | 1221 |
| MseI | TTAA | 4 cut(s) | 42, 1340, 1364, 1623 |
| MspA1I | CMGCKG | 1 cut(s) | 1191 |
| MvaI | CCWGG | 2 cut(s) | 180, 771 |
| MvnI | CGCG | 1 cut(s) | 1191 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 1200, 1685 |
| NcoI | CCATGG | 2 cut(s) | 1251, 1519 |
| NdeI | CATATG | 1 cut(s) | 10 |
| NdeII | GATC | 1 cut(s) | 1726 |
| NmuCI | GTSAC | 4 cut(s) | 137, 235, 1552, 1615 |
| NsiI | ATGCAT | 1 cut(s) | 1221 |
| NspI | RCATGY | 3 cut(s) | 1219, 1319, 1373 |
| PaeI | GCATGC | 1 cut(s) | 1319 |
| PagI | TCATGA | 2 cut(s) | 1110, 1576 |
| PciI | ACATGT | 1 cut(s) | 1369 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 57 |
| PfeI | GAWTC | 1 cut(s) | 1448 |
| PkrI | GCNGC | 3 cut(s) | 37, 1193, 1509 |
| PleI | GAGTC | 2 cut(s) | 144, 1151 |
| PmaCI | CACGTG | 1 cut(s) | 235 |
| PmlI | CACGTG | 1 cut(s) | 235 |
| PpsI | GAGTC | 2 cut(s) | 144, 1151 |
| Ppu21I | YACGTR | 1 cut(s) | 235 |
| PscI | ACATGT | 1 cut(s) | 1369 |
| Psp6I | CCWGG | 2 cut(s) | 178, 769 |
| PspCI | CACGTG | 1 cut(s) | 235 |
| PspGI | CCWGG | 2 cut(s) | 178, 769 |
| PspOMI | GGGCCC | 3 cut(s) | 189, 1116, 1184 |
| PspPI | GGNCC | 8 cut(s) | 168, 189, 190, 247, 1116, 1117, 1184, 1185 |
| PsuI | RGATCY | 1 cut(s) | 1726 |
| SacII | CCGCGG | 1 cut(s) | 1192 |
| SalI | GTCGAC | 1 cut(s) | 1490 |
| SaqAI | TTAA | 4 cut(s) | 42, 1340, 1364, 1623 |
| SatI | GCNGC | 3 cut(s) | 36, 1192, 1508 |
| Sau3AI | GATC | 1 cut(s) | 1726 |
| Sau96I | GGNCC | 8 cut(s) | 168, 189, 190, 247, 1116, 1117, 1184, 1185 |
| SchI | GAGTC | 2 cut(s) | 145, 1152 |
| SduI | GDGCHC | 4 cut(s) | 193, 1120, 1128, 1188 |
| SexAI | ACCWGGT | 1 cut(s) | 178 |
| Sfr303I | CCGCGG | 1 cut(s) | 1192 |
| SgrBI | CCGCGG | 1 cut(s) | 1192 |
| SmaI | CCCGGG | 2 cut(s) | 166, 1122 |
| SmlI | CTYRAG | 4 cut(s) | 223, 712, 857, 1039 |
| SmoI | CTYRAG | 4 cut(s) | 223, 712, 857, 1039 |
| SpeI | ACTAGT | 1 cut(s) | 1172 |
| SphI | GCATGC | 1 cut(s) | 1319 |
| Sse9I | AATT | 6 cut(s) | 20, 44, 91, 1337, 1700, 1744 |
| SsiI | CCGC | 3 cut(s) | 35, 1189, 1191 |
| SspMI | CTAG | 7 cut(s) | 437, 474, 557, 594, 1104, 1173, 1439 |
| StyI | CCWWGG | 4 cut(s) | 83, 1251, 1519, 1689 |
| TaaI | ACNGT | 2 cut(s) | 1516, 1621 |
| TaiI | ACGT | 2 cut(s) | 237, 1248 |
| TaqI | TCGA | 1 cut(s) | 1491 |
| TaqII | GACCGA | 1 cut(s) | 1245 |
| TasI | AATT | 6 cut(s) | 20, 44, 91, 1337, 1700, 1744 |
| TauI | GCSGC | 2 cut(s) | 38, 1194 |
| TfiI | GAWTC | 1 cut(s) | 1448 |
| Tru1I | TTAA | 4 cut(s) | 42, 1340, 1364, 1623 |
| Tru9I | TTAA | 4 cut(s) | 42, 1340, 1364, 1623 |
| TseFI | GTSAC | 4 cut(s) | 137, 235, 1552, 1615 |
| TseI | GCWGC | 1 cut(s) | 1507 |
| Tsp45I | GTSAC | 4 cut(s) | 137, 235, 1552, 1615 |
| TspDTI | ATGAA | 4 cut(s) | 1099, 1518, 1565, 1593 |
| TspGWI | ACGGA | 2 cut(s) | 148, 1174 |
| TspMI | CCCGGG | 2 cut(s) | 164, 1120 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 354 |
| XapI | RAATTY | 2 cut(s) | 44, 91 |
| XceI | RCATGY | 3 cut(s) | 1219, 1319, 1373 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1450 |
| XmaI | CCCGGG | 2 cut(s) | 164, 1120 |
| XmiI | GTMKAC | 3 cut(s) | 5, 1227, 1491 |
| XspI | CTAG | 7 cut(s) | 437, 474, 557, 594, 1104, 1173, 1439 |
| Zsp2I | ATGCAT | 1 cut(s) | 1221 |