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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 400 |
| AclI | AACGTT | 1 cut(s) | 653 |
| AclWI | GGATC | 1 cut(s) | 30 |
| AcsI | RAATTY | 2 cut(s) | 605, 763 |
| AcuI | CTGAAG | 1 cut(s) | 395 |
| AfaI | GTAC | 1 cut(s) | 693 |
| AgeI | ACCGGT | 1 cut(s) | 356 |
| AgsI | TTSAA | 3 cut(s) | 265, 448, 547 |
| AluBI | AGCT | 7 cut(s) | 125, 164, 188, 200, 244, 370, 677 |
| AluI | AGCT | 7 cut(s) | 125, 164, 188, 200, 244, 370, 677 |
| AlwI | GGATC | 1 cut(s) | 30 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 29 |
| Ama87I | CYCGRG | 1 cut(s) | 134 |
| AoxI | GGCC | 1 cut(s) | 321 |
| ApeKI | GCWGC | 3 cut(s) | 62, 370, 524 |
| ApoI | RAATTY | 2 cut(s) | 605, 763 |
| AsiGI | ACCGGT | 1 cut(s) | 356 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 199 |
| AsuHPI | GGTGA | 3 cut(s) | 523, 728, 793 |
| AvaI | CYCGRG | 1 cut(s) | 134 |
| BbvI | GCAGC | 3 cut(s) | 74, 357, 511 |
| BccI | CCATC | 2 cut(s) | 379, 786 |
| BceAI | ACGGC | 1 cut(s) | 308 |
| BclI | TGATCA | 1 cut(s) | 513 |
| BfaI | CTAG | 2 cut(s) | 12, 192 |
| BisI | GCNGC | 4 cut(s) | 63, 371, 400, 525 |
| BlpI | GCTNAGC | 1 cut(s) | 245 |
| BlsI | GCNGC | 4 cut(s) | 64, 372, 401, 526 |
| BmeT110I | CYCGRG | 1 cut(s) | 134 |
| BmiI | GGNNCC | 1 cut(s) | 462 |
| BmsI | GCATC | 4 cut(s) | 35, 287, 411, 466 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 245 |
| BsaAI | YACGTR | 2 cut(s) | 695, 749 |
| BsaBI | GATNNNNATC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 1 cut(s) | 421 |
| BsaWI | WCCGGW | 2 cut(s) | 356, 613 |
| Bse118I | RCCGGY | 1 cut(s) | 356 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| Bse8I | GATNNNNATC | 1 cut(s) | 85 |
| BseDI | CCNNGG | 1 cut(s) | 421 |
| BseGI | GGATG | 2 cut(s) | 390, 481 |
| BseJI | GATNNNNATC | 1 cut(s) | 85 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseMII | CTCAG | 1 cut(s) | 236 |
| BseXI | GCAGC | 3 cut(s) | 74, 357, 511 |
| BshFI | GGCC | 1 cut(s) | 323 |
| BshTI | ACCGGT | 1 cut(s) | 356 |
| BsiHKCI | CYCGRG | 1 cut(s) | 134 |
| BsiSI | CCGG | 2 cut(s) | 357, 614 |
| BsmI | GAATGC | 1 cut(s) | 64 |
| BsnI | GGCC | 1 cut(s) | 323 |
| BsoBI | CYCGRG | 1 cut(s) | 134 |
| Bsp143I | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 245 |
| BspACI | CCGC | 1 cut(s) | 400 |
| BspANI | GGCC | 1 cut(s) | 323 |
| BspCNI | CTCAG | 1 cut(s) | 237 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 1 cut(s) | 462 |
| BspPI | GGATC | 1 cut(s) | 30 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrFI | RCCGGY | 1 cut(s) | 356 |
| BssAI | RCCGGY | 1 cut(s) | 356 |
| BssECI | CCNNGG | 1 cut(s) | 421 |
| BssMI | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| Bst4CI | ACNGT | 2 cut(s) | 439, 740 |
| BstBAI | YACGTR | 2 cut(s) | 695, 749 |
| BstDEI | CTNAG | 3 cut(s) | 47, 245, 258 |
| BstF5I | GGATG | 2 cut(s) | 390, 481 |
| BstKTI | GATC | 5 cut(s) | 20, 38, 83, 516, 598 |
| BstMBI | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 376 |
| BstV1I | GCAGC | 3 cut(s) | 74, 357, 511 |
| BstX2I | RGATCY | 1 cut(s) | 35 |
| BstYI | RGATCY | 1 cut(s) | 35 |
| BsuRI | GGCC | 1 cut(s) | 323 |
| BtsCI | GGATG | 2 cut(s) | 390, 481 |
| CaiI | CAGNNNCTG | 1 cut(s) | 29 |
| CciI | TCATGA | 1 cut(s) | 331 |
| Cfr10I | RCCGGY | 1 cut(s) | 356 |
| Csp6I | GTAC | 1 cut(s) | 692 |
| CspAI | ACCGGT | 1 cut(s) | 356 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 340, 375 |
| CviAII | CATG | 2 cut(s) | 332, 583 |
| CviQI | GTAC | 1 cut(s) | 692 |
| DdeI | CTNAG | 3 cut(s) | 47, 245, 258 |
| DpnI | GATC | 5 cut(s) | 19, 37, 82, 515, 597 |
| DpnII | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| Eco57I | CTGAAG | 1 cut(s) | 395 |
| Eco88I | CYCGRG | 1 cut(s) | 134 |
| EcoT22I | ATGCAT | 1 cut(s) | 481 |
| FaeI | CATG | 2 cut(s) | 335, 586 |
| FatI | CATG | 2 cut(s) | 331, 582 |
| FbaI | TGATCA | 1 cut(s) | 513 |
| Fnu4HI | GCNGC | 4 cut(s) | 63, 371, 400, 525 |
| FokI | GGATG | 2 cut(s) | 397, 488 |
| Fsp4HI | GCNGC | 4 cut(s) | 63, 371, 400, 525 |
| FspBI | CTAG | 2 cut(s) | 12, 192 |
| GluI | GCNGC | 4 cut(s) | 63, 371, 400, 525 |
| HaeIII | GGCC | 1 cut(s) | 323 |
| HapII | CCGG | 2 cut(s) | 357, 614 |
| Hin1II | CATG | 2 cut(s) | 335, 586 |
| HincII | GTYRAC | 1 cut(s) | 558 |
| HindII | GTYRAC | 1 cut(s) | 558 |
| HindIII | AAGCTT | 1 cut(s) | 198 |
| HpaII | CCGG | 2 cut(s) | 357, 614 |
| HphI | GGTGA | 3 cut(s) | 523, 728, 793 |
| Hpy166II | GTNNAC | 1 cut(s) | 558 |
| Hpy188I | TCNGA | 4 cut(s) | 118, 295, 422, 504 |
| Hpy188III | TCNNGA | 6 cut(s) | 78, 231, 265, 332, 547, 686 |
| Hpy8I | GTNNAC | 1 cut(s) | 558 |
| HpyCH4III | ACNGT | 2 cut(s) | 439, 740 |
| HpyCH4IV | ACGT | 3 cut(s) | 653, 694, 748 |
| HpyCH4V | TGCA | 7 cut(s) | 32, 62, 107, 479, 527, 761, 769 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 376 |
| HpyF3I | CTNAG | 3 cut(s) | 47, 245, 258 |
| HpySE526I | ACGT | 3 cut(s) | 653, 694, 748 |
| Hsp92II | CATG | 2 cut(s) | 335, 586 |
| Ksp22I | TGATCA | 1 cut(s) | 513 |
| Kzo9I | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| LpnPI | CCDG | 8 cut(s) | 370, 477, 606, 627, 652, 663, 671, 755 |
| Lsp1109I | GCAGC | 3 cut(s) | 74, 357, 511 |
| LweI | GCATC | 4 cut(s) | 35, 287, 411, 466 |
| MaeI | CTAG | 2 cut(s) | 12, 192 |
| MaeII | ACGT | 3 cut(s) | 653, 694, 748 |
| MaeIII | GTNAC | 2 cut(s) | 145, 388 |
| MalI | GATC | 5 cut(s) | 19, 37, 82, 515, 597 |
| MboI | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| MboII | GAAGA | 1 cut(s) | 785 |
| MfeI | CAATTG | 1 cut(s) | 643 |
| MflI | RGATCY | 1 cut(s) | 35 |
| MluCI | AATT | 6 cut(s) | 303, 605, 643, 705, 763, 776 |
| MmeI | TCCRAC | 1 cut(s) | 482 |
| MnlI | CCTC | 6 cut(s) | 139, 214, 374, 416, 691, 744 |
| Mph1103I | ATGCAT | 1 cut(s) | 481 |
| MroXI | GAANNNNTTC | 1 cut(s) | 199 |
| MseI | TTAA | 2 cut(s) | 54, 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 336 |
| MspA1I | CMGCKG | 1 cut(s) | 677 |
| MspI | CCGG | 2 cut(s) | 357, 614 |
| MunI | CAATTG | 1 cut(s) | 643 |
| Mva1269I | GAATGC | 1 cut(s) | 64 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 376 |
| NdeII | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| NlaIII | CATG | 2 cut(s) | 335, 586 |
| NlaIV | GGNNCC | 1 cut(s) | 462 |
| NmuCI | GTSAC | 1 cut(s) | 145 |
| NsiI | ATGCAT | 1 cut(s) | 481 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PctI | GAATGC | 1 cut(s) | 64 |
| PdmI | GAANNNNTTC | 1 cut(s) | 199 |
| PinAI | ACCGGT | 1 cut(s) | 356 |
| PkrI | GCNGC | 4 cut(s) | 64, 372, 401, 526 |
| Ppu21I | YACGTR | 2 cut(s) | 695, 749 |
| Psp1406I | AACGTT | 1 cut(s) | 653 |
| PspN4I | GGNNCC | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 29 |
| PsuI | RGATCY | 1 cut(s) | 35 |
| PvuII | CAGCTG | 1 cut(s) | 677 |
| RsaI | GTAC | 1 cut(s) | 693 |
| RsaNI | GTAC | 1 cut(s) | 692 |
| RseI | CAYNNNNRTG | 1 cut(s) | 336 |
| SaqAI | TTAA | 2 cut(s) | 54, 365 |
| SatI | GCNGC | 4 cut(s) | 63, 371, 400, 525 |
| Sau3AI | GATC | 5 cut(s) | 17, 35, 80, 513, 595 |
| SfaNI | GCATC | 4 cut(s) | 35, 287, 411, 466 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 336 |
| Sse9I | AATT | 6 cut(s) | 303, 605, 643, 705, 763, 776 |
| SsiI | CCGC | 1 cut(s) | 400 |
| SspMI | CTAG | 2 cut(s) | 12, 192 |
| TaaI | ACNGT | 2 cut(s) | 439, 740 |
| TaiI | ACGT | 3 cut(s) | 656, 697, 751 |
| TaqI | TCGA | 1 cut(s) | 308 |
| TasI | AATT | 6 cut(s) | 303, 605, 643, 705, 763, 776 |
| TauI | GCSGC | 1 cut(s) | 402 |
| Tru1I | TTAA | 2 cut(s) | 54, 365 |
| Tru9I | TTAA | 2 cut(s) | 54, 365 |
| TseFI | GTSAC | 1 cut(s) | 145 |
| TseI | GCWGC | 3 cut(s) | 62, 370, 524 |
| Tsp45I | GTSAC | 1 cut(s) | 145 |
| TspDTI | ATGAA | 5 cut(s) | 83, 360, 599, 603, 725 |
| XapI | RAATTY | 2 cut(s) | 605, 763 |
| XmnI | GAANNNNTTC | 1 cut(s) | 199 |
| XspI | CTAG | 2 cut(s) | 12, 192 |
| Zsp2I | ATGCAT | 1 cut(s) | 481 |