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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 609 |
| AciI | CCGC | 1 cut(s) | 479 |
| AclWI | GGATC | 1 cut(s) | 579 |
| AfaI | GTAC | 1 cut(s) | 120 |
| AgeI | ACCGGT | 1 cut(s) | 344 |
| AgsI | TTSAA | 4 cut(s) | 107, 436, 461, 587 |
| AluBI | AGCT | 5 cut(s) | 32, 101, 185, 357, 403 |
| AluI | AGCT | 5 cut(s) | 32, 101, 185, 357, 403 |
| Alw26I | GTCTC | 4 cut(s) | 104, 208, 461, 546 |
| AlwI | GGATC | 1 cut(s) | 579 |
| Aor13HI | TCCGGA | 1 cut(s) | 609 |
| AoxI | GGCC | 1 cut(s) | 318 |
| ApeKI | GCWGC | 3 cut(s) | 287, 443, 501 |
| AsiGI | ACCGGT | 1 cut(s) | 344 |
| AsuC2I | CCSGG | 1 cut(s) | 364 |
| AsuHPI | GGTGA | 1 cut(s) | 404 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 102, 135 |
| BbvI | GCAGC | 3 cut(s) | 299, 430, 513 |
| BciVI | GTATCC | 1 cut(s) | 268 |
| BcnI | CCSGG | 1 cut(s) | 364 |
| BcoDI | GTCTC | 4 cut(s) | 104, 208, 461, 546 |
| BfaI | CTAG | 2 cut(s) | 408, 485 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfuI | GTATCC | 1 cut(s) | 268 |
| BisI | GCNGC | 3 cut(s) | 288, 444, 502 |
| BlpI | GCTNAGC | 1 cut(s) | 141 |
| BlsI | GCNGC | 3 cut(s) | 289, 445, 503 |
| Bme1390I | CCNGG | 1 cut(s) | 364 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 364 |
| BmsI | GCATC | 3 cut(s) | 139, 248, 521 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 205, 237 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 141 |
| BpuEI | CTTGAG | 1 cut(s) | 171 |
| BpuMI | CCSGG | 1 cut(s) | 364 |
| BsaAI | YACGTR | 1 cut(s) | 299 |
| BsaBI | GATNNNNATC | 1 cut(s) | 570 |
| BsaJI | CCNNGG | 1 cut(s) | 600 |
| BsaWI | WCCGGW | 2 cut(s) | 344, 609 |
| Bse118I | RCCGGY | 1 cut(s) | 344 |
| Bse3DI | GCAATG | 2 cut(s) | 59, 651 |
| Bse8I | GATNNNNATC | 1 cut(s) | 570 |
| BseAI | TCCGGA | 1 cut(s) | 609 |
| BseDI | CCNNGG | 1 cut(s) | 600 |
| BseGI | GGATG | 3 cut(s) | 57, 239, 460 |
| BseJI | GATNNNNATC | 1 cut(s) | 570 |
| BseMI | GCAATG | 2 cut(s) | 59, 651 |
| BseMII | CTCAG | 1 cut(s) | 390 |
| BseRI | GAGGAG | 1 cut(s) | 479 |
| BseXI | GCAGC | 3 cut(s) | 299, 430, 513 |
| BsgI | GTGCAG | 1 cut(s) | 429 |
| BshFI | GGCC | 1 cut(s) | 320 |
| BshTI | ACCGGT | 1 cut(s) | 344 |
| BsiSI | CCGG | 3 cut(s) | 345, 364, 610 |
| BsmAI | GTCTC | 4 cut(s) | 104, 208, 461, 546 |
| BsmI | GAATGC | 1 cut(s) | 605 |
| BsnI | GGCC | 1 cut(s) | 320 |
| Bsp13I | TCCGGA | 1 cut(s) | 609 |
| Bsp143I | GATC | 1 cut(s) | 571 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 141 |
| BspACI | CCGC | 1 cut(s) | 479 |
| BspANI | GGCC | 1 cut(s) | 320 |
| BspCNI | CTCAG | 1 cut(s) | 391 |
| BspEI | TCCGGA | 1 cut(s) | 609 |
| BspHI | TCATGA | 1 cut(s) | 574 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 579 |
| BsrDI | GCAATG | 2 cut(s) | 59, 651 |
| BsrFI | RCCGGY | 1 cut(s) | 344 |
| BssAI | RCCGGY | 1 cut(s) | 344 |
| BssECI | CCNNGG | 1 cut(s) | 600 |
| BssMI | GATC | 1 cut(s) | 571 |
| BssT1I | CCWWGG | 1 cut(s) | 600 |
| Bst4CI | ACNGT | 2 cut(s) | 415, 641 |
| Bst6I | CTCTTC | 4 cut(s) | 102, 324, 456, 536 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstBAI | YACGTR | 1 cut(s) | 299 |
| BstC8I | GCNNGC | 2 cut(s) | 405, 597 |
| BstDEI | CTNAG | 5 cut(s) | 47, 141, 228, 353, 399 |
| BstF5I | GGATG | 3 cut(s) | 57, 239, 460 |
| BstKTI | GATC | 1 cut(s) | 574 |
| BstMAI | GTCTC | 4 cut(s) | 104, 208, 461, 546 |
| BstMBI | GATC | 1 cut(s) | 571 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 293 |
| BstNSI | RCATGY | 1 cut(s) | 595 |
| BstSCI | CCNGG | 1 cut(s) | 362 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 3 cut(s) | 299, 430, 513 |
| BsuI | GTATCC | 1 cut(s) | 268 |
| BsuRI | GGCC | 1 cut(s) | 320 |
| BtsCI | GGATG | 3 cut(s) | 57, 239, 460 |
| Cac8I | GCNNGC | 2 cut(s) | 405, 597 |
| CciI | TCATGA | 1 cut(s) | 574 |
| Cfr10I | RCCGGY | 1 cut(s) | 344 |
| Csp6I | GTAC | 1 cut(s) | 119 |
| CspAI | ACCGGT | 1 cut(s) | 344 |
| CviAII | CATG | 3 cut(s) | 575, 592, 657 |
| CviJI | RGCY | 9 cut(s) | 5, 26, 32, 101, 185, 320, 357, 403, 599 |
| CviKI_1 | RGCY | 9 cut(s) | 5, 26, 32, 101, 185, 320, 357, 403, 599 |
| CviQI | GTAC | 1 cut(s) | 119 |
| DdeI | CTNAG | 5 cut(s) | 47, 141, 228, 353, 399 |
| DpnI | GATC | 1 cut(s) | 573 |
| DpnII | GATC | 1 cut(s) | 571 |
| Eam1104I | CTCTTC | 4 cut(s) | 102, 324, 456, 536 |
| EarI | CTCTTC | 4 cut(s) | 102, 324, 456, 536 |
| Eco130I | CCWWGG | 1 cut(s) | 600 |
| Eco147I | AGGCCT | 1 cut(s) | 320 |
| EcoT14I | CCWWGG | 1 cut(s) | 600 |
| EcoT22I | ATGCAT | 1 cut(s) | 653 |
| ErhI | CCWWGG | 1 cut(s) | 600 |
| FaeI | CATG | 3 cut(s) | 578, 595, 660 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 416, 448 |
| FatI | CATG | 3 cut(s) | 574, 591, 656 |
| FauNDI | CATATG | 1 cut(s) | 292 |
| Fnu4HI | GCNGC | 3 cut(s) | 288, 444, 502 |
| FokI | GGATG | 3 cut(s) | 64, 226, 467 |
| Fsp4HI | GCNGC | 3 cut(s) | 288, 444, 502 |
| FspBI | CTAG | 2 cut(s) | 408, 485 |
| GluI | GCNGC | 3 cut(s) | 288, 444, 502 |
| HaeIII | GGCC | 1 cut(s) | 320 |
| HapII | CCGG | 3 cut(s) | 345, 364, 610 |
| Hin1II | CATG | 3 cut(s) | 578, 595, 660 |
| HpaII | CCGG | 3 cut(s) | 345, 364, 610 |
| HphI | GGTGA | 1 cut(s) | 404 |
| Hpy166II | GTNNAC | 2 cut(s) | 350, 637 |
| Hpy188I | TCNGA | 1 cut(s) | 325 |
| Hpy188III | TCNNGA | 7 cut(s) | 198, 418, 433, 485, 516, 575, 610 |
| Hpy8I | GTNNAC | 2 cut(s) | 350, 637 |
| HpyAV | CCTTC | 4 cut(s) | 49, 277, 379, 593 |
| HpyCH4III | ACNGT | 2 cut(s) | 415, 641 |
| HpyCH4IV | ACGT | 1 cut(s) | 298 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 5 cut(s) | 47, 141, 228, 353, 399 |
| HpySE526I | ACGT | 1 cut(s) | 298 |
| Hsp92II | CATG | 3 cut(s) | 578, 595, 660 |
| Kpn2I | TCCGGA | 1 cut(s) | 609 |
| Kzo9I | GATC | 1 cut(s) | 571 |
| LmnI | GCTCC | 2 cut(s) | 10, 612 |
| LpnPI | CCDG | 5 cut(s) | 111, 358, 377, 609, 623 |
| Lsp1109I | GCAGC | 3 cut(s) | 299, 430, 513 |
| LweI | GCATC | 3 cut(s) | 139, 248, 521 |
| MaeI | CTAG | 2 cut(s) | 408, 485 |
| MaeII | ACGT | 1 cut(s) | 298 |
| MalI | GATC | 1 cut(s) | 573 |
| MboI | GATC | 1 cut(s) | 571 |
| MboII | GAAGA | 6 cut(s) | 119, 341, 433, 473, 550, 553 |
| MluCI | AATT | 2 cut(s) | 494, 531 |
| MmeI | TCCRAC | 2 cut(s) | 39, 286 |
| MnlI | CCTC | 5 cut(s) | 68, 325, 331, 457, 562 |
| Mph1103I | ATGCAT | 1 cut(s) | 653 |
| MroI | TCCGGA | 1 cut(s) | 609 |
| MseI | TTAA | 1 cut(s) | 428 |
| MspA1I | CMGCKG | 1 cut(s) | 101 |
| MspI | CCGG | 3 cut(s) | 345, 364, 610 |
| MspR9I | CCNGG | 1 cut(s) | 364 |
| Mva1269I | GAATGC | 1 cut(s) | 605 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 293 |
| NciI | CCSGG | 1 cut(s) | 364 |
| NdeI | CATATG | 1 cut(s) | 292 |
| NdeII | GATC | 1 cut(s) | 571 |
| NlaIII | CATG | 3 cut(s) | 578, 595, 660 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NsiI | ATGCAT | 1 cut(s) | 653 |
| NspI | RCATGY | 1 cut(s) | 595 |
| PagI | TCATGA | 1 cut(s) | 574 |
| PceI | AGGCCT | 1 cut(s) | 320 |
| PctI | GAATGC | 1 cut(s) | 605 |
| PinAI | ACCGGT | 1 cut(s) | 344 |
| PkrI | GCNGC | 3 cut(s) | 289, 445, 503 |
| Ppu21I | YACGTR | 1 cut(s) | 299 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PvuII | CAGCTG | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 120 |
| RsaNI | GTAC | 1 cut(s) | 119 |
| SaqAI | TTAA | 1 cut(s) | 428 |
| SatI | GCNGC | 3 cut(s) | 288, 444, 502 |
| Sau3AI | GATC | 1 cut(s) | 571 |
| ScrFI | CCNGG | 1 cut(s) | 364 |
| SfaNI | GCATC | 3 cut(s) | 139, 248, 521 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmlI | CTYRAG | 1 cut(s) | 186 |
| SmoI | CTYRAG | 1 cut(s) | 186 |
| Sse9I | AATT | 2 cut(s) | 494, 531 |
| SseBI | AGGCCT | 1 cut(s) | 320 |
| SsiI | CCGC | 1 cut(s) | 479 |
| SspMI | CTAG | 2 cut(s) | 408, 485 |
| StuI | AGGCCT | 1 cut(s) | 320 |
| StyD4I | CCNGG | 1 cut(s) | 362 |
| StyI | CCWWGG | 1 cut(s) | 600 |
| TaaI | ACNGT | 2 cut(s) | 415, 641 |
| TaiI | ACGT | 1 cut(s) | 301 |
| TasI | AATT | 2 cut(s) | 494, 531 |
| Tru1I | TTAA | 1 cut(s) | 428 |
| Tru9I | TTAA | 1 cut(s) | 428 |
| TseI | GCWGC | 3 cut(s) | 287, 443, 501 |
| TspDTI | ATGAA | 4 cut(s) | 68, 83, 342, 398 |
| XbaI | TCTAGA | 1 cut(s) | 484 |
| XceI | RCATGY | 1 cut(s) | 595 |
| XspI | CTAG | 2 cut(s) | 408, 485 |
| Zsp2I | ATGCAT | 1 cut(s) | 653 |