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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 211 |
| AciI | CCGC | 2 cut(s) | 494, 549 |
| AcyI | GRCGYC | 1 cut(s) | 178 |
| AgsI | TTSAA | 8 cut(s) | 36, 69, 102, 230, 288, 317, 329, 742 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 523 |
| AjnI | CCWGG | 1 cut(s) | 12 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 210, 242 |
| AluBI | AGCT | 3 cut(s) | 540, 677, 724 |
| AluI | AGCT | 3 cut(s) | 540, 677, 724 |
| Alw21I | GWGCWC | 1 cut(s) | 726 |
| AoxI | GGCC | 1 cut(s) | 15 |
| ApeKI | GCWGC | 3 cut(s) | 143, 262, 320 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 29, 61 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 564 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 3 cut(s) | 42, 191, 394 |
| BanII | GRGCYC | 1 cut(s) | 726 |
| BbsI | GAAGAC | 2 cut(s) | 68, 90 |
| Bbv12I | GWGCWC | 1 cut(s) | 726 |
| BbvI | GCAGC | 3 cut(s) | 130, 249, 332 |
| BccI | CCATC | 3 cut(s) | 241, 371, 577 |
| BciT130I | CCWGG | 1 cut(s) | 14 |
| BciVI | GTATCC | 1 cut(s) | 212 |
| BclI | TGATCA | 2 cut(s) | 196, 430 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BfuI | GTATCC | 1 cut(s) | 212 |
| BisI | GCNGC | 4 cut(s) | 144, 263, 321, 549 |
| BlsI | GCNGC | 4 cut(s) | 145, 264, 322, 550 |
| Bme1390I | CCNGG | 2 cut(s) | 14, 355 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 523 |
| BmrFI | CCNGG | 2 cut(s) | 14, 355 |
| BmsI | GCATC | 1 cut(s) | 232 |
| BpiI | GAAGAC | 2 cut(s) | 68, 90 |
| BpuEI | CTTGAG | 1 cut(s) | 737 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaHI | GRCGYC | 1 cut(s) | 178 |
| BsaJI | CCNNGG | 1 cut(s) | 108 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 242, 272 |
| Bse3DI | GCAATG | 1 cut(s) | 551 |
| BseBI | CCWGG | 1 cut(s) | 14 |
| BseDI | CCNNGG | 1 cut(s) | 108 |
| BseGI | GGATG | 3 cut(s) | 13, 247, 747 |
| BseMI | GCAATG | 1 cut(s) | 551 |
| BseXI | GCAGC | 3 cut(s) | 130, 249, 332 |
| Bsh1236I | CGCG | 1 cut(s) | 211 |
| BshFI | GGCC | 1 cut(s) | 17 |
| BsiHKAI | GWGCWC | 1 cut(s) | 726 |
| BsiSI | CCGG | 1 cut(s) | 354 |
| BslFI | GGGAC | 1 cut(s) | 635 |
| BsmFI | GGGAC | 1 cut(s) | 635 |
| BsmI | GAATGC | 1 cut(s) | 31 |
| BsnI | GGCC | 1 cut(s) | 17 |
| Bsp1286I | GDGCHC | 1 cut(s) | 726 |
| Bsp143I | GATC | 2 cut(s) | 196, 430 |
| BspACI | CCGC | 2 cut(s) | 494, 549 |
| BspANI | GGCC | 1 cut(s) | 17 |
| BspFNI | CGCG | 1 cut(s) | 211 |
| BsrDI | GCAATG | 1 cut(s) | 551 |
| BssECI | CCNNGG | 1 cut(s) | 108 |
| BssMI | GATC | 2 cut(s) | 196, 430 |
| BssNI | GRCGYC | 1 cut(s) | 178 |
| BssT1I | CCWWGG | 1 cut(s) | 108 |
| Bst2UI | CCWGG | 1 cut(s) | 14 |
| Bst6I | CTCTTC | 1 cut(s) | 504 |
| BstACI | GRCGYC | 1 cut(s) | 178 |
| BstC8I | GCNNGC | 3 cut(s) | 542, 546, 726 |
| BstF5I | GGATG | 3 cut(s) | 13, 247, 747 |
| BstFNI | CGCG | 1 cut(s) | 211 |
| BstKTI | GATC | 2 cut(s) | 199, 433 |
| BstMBI | GATC | 2 cut(s) | 196, 430 |
| BstNI | CCWGG | 1 cut(s) | 14 |
| BstSCI | CCNGG | 2 cut(s) | 12, 353 |
| BstUI | CGCG | 1 cut(s) | 211 |
| BstV1I | GCAGC | 3 cut(s) | 130, 249, 332 |
| BstV2I | GAAGAC | 2 cut(s) | 68, 90 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 25 |
| BsuI | GTATCC | 1 cut(s) | 212 |
| BsuRI | GGCC | 1 cut(s) | 17 |
| BtgZI | GCGATG | 1 cut(s) | 260 |
| BtsCI | GGATG | 3 cut(s) | 13, 247, 747 |
| Cac8I | GCNNGC | 3 cut(s) | 542, 546, 726 |
| CseI | GACGC | 1 cut(s) | 167 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 574, 609 |
| CviAII | CATG | 3 cut(s) | 158, 632, 683 |
| CviJI | RGCY | 9 cut(s) | 17, 41, 283, 540, 548, 577, 597, 677, 724 |
| CviKI_1 | RGCY | 9 cut(s) | 17, 41, 283, 540, 548, 577, 597, 677, 724 |
| DpnI | GATC | 2 cut(s) | 198, 432 |
| DpnII | GATC | 2 cut(s) | 196, 430 |
| DriI | GACNNNNNGTC | 1 cut(s) | 523 |
| Eam1104I | CTCTTC | 1 cut(s) | 504 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 523 |
| EarI | CTCTTC | 1 cut(s) | 504 |
| Ecl136II | GAGCTC | 1 cut(s) | 724 |
| Eco130I | CCWWGG | 1 cut(s) | 108 |
| Eco24I | GRGCYC | 1 cut(s) | 726 |
| Eco53kI | GAGCTC | 1 cut(s) | 724 |
| EcoICRI | GAGCTC | 1 cut(s) | 724 |
| EcoRII | CCWGG | 1 cut(s) | 12 |
| EcoT14I | CCWWGG | 1 cut(s) | 108 |
| EcoT38I | GRGCYC | 1 cut(s) | 726 |
| ErhI | CCWWGG | 1 cut(s) | 108 |
| FaeI | CATG | 3 cut(s) | 161, 635, 686 |
| FaqI | GGGAC | 1 cut(s) | 635 |
| FatI | CATG | 3 cut(s) | 157, 631, 682 |
| FauNDI | CATATG | 1 cut(s) | 204 |
| FbaI | TGATCA | 2 cut(s) | 196, 430 |
| Fnu4HI | GCNGC | 4 cut(s) | 144, 263, 321, 549 |
| FokI | GGATG | 3 cut(s) | 20, 254, 734 |
| FriOI | GRGCYC | 1 cut(s) | 726 |
| Fsp4HI | GCNGC | 4 cut(s) | 144, 263, 321, 549 |
| GluI | GCNGC | 4 cut(s) | 144, 263, 321, 549 |
| HaeIII | GGCC | 1 cut(s) | 17 |
| HapII | CCGG | 1 cut(s) | 354 |
| HgaI | GACGC | 1 cut(s) | 167 |
| Hin1I | GRCGYC | 1 cut(s) | 178 |
| Hin1II | CATG | 3 cut(s) | 161, 635, 686 |
| HindIII | AAGCTT | 1 cut(s) | 538 |
| HinfI | GANTC | 6 cut(s) | 119, 137, 299, 361, 407, 484 |
| HpaII | CCGG | 1 cut(s) | 354 |
| HphI | GGTGA | 3 cut(s) | 42, 191, 394 |
| Hpy188I | TCNGA | 1 cut(s) | 273 |
| Hpy99I | CGWCG | 1 cut(s) | 183 |
| HpyAV | CCTTC | 2 cut(s) | 294, 554 |
| HpyCH4V | TGCA | 6 cut(s) | 31, 146, 265, 370, 523, 654 |
| Hsp92I | GRCGYC | 1 cut(s) | 178 |
| Hsp92II | CATG | 3 cut(s) | 161, 635, 686 |
| Ksp22I | TGATCA | 2 cut(s) | 196, 430 |
| Kzo9I | GATC | 2 cut(s) | 196, 430 |
| LpnPI | CCDG | 3 cut(s) | 26, 367, 558 |
| Lsp1109I | GCAGC | 3 cut(s) | 130, 249, 332 |
| LweI | GCATC | 1 cut(s) | 232 |
| MaeIII | GTNAC | 2 cut(s) | 334, 525 |
| MalI | GATC | 2 cut(s) | 198, 432 |
| MboI | GATC | 2 cut(s) | 196, 430 |
| MboII | GAAGA | 9 cut(s) | 73, 90, 289, 341, 370, 509, 518, 521, 754 |
| MfeI | CAATTG | 1 cut(s) | 324 |
| MhlI | GDGCHC | 1 cut(s) | 726 |
| MluCI | AATT | 2 cut(s) | 324, 702 |
| MlyI | GAGTC | 1 cut(s) | 308 |
| MnlI | CCTC | 5 cut(s) | 154, 267, 391, 612, 761 |
| MroXI | GAANNNNTTC | 1 cut(s) | 564 |
| MslI | CAYNNNNRTG | 1 cut(s) | 375 |
| MspI | CCGG | 1 cut(s) | 354 |
| MspR9I | CCNGG | 2 cut(s) | 14, 355 |
| MunI | CAATTG | 1 cut(s) | 324 |
| Mva1269I | GAATGC | 1 cut(s) | 31 |
| MvaI | CCWGG | 1 cut(s) | 14 |
| MvnI | CGCG | 1 cut(s) | 211 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NdeI | CATATG | 1 cut(s) | 204 |
| NdeII | GATC | 2 cut(s) | 196, 430 |
| NlaIII | CATG | 3 cut(s) | 161, 635, 686 |
| NmuCI | GTSAC | 1 cut(s) | 525 |
| PctI | GAATGC | 1 cut(s) | 31 |
| PdmI | GAANNNNTTC | 1 cut(s) | 564 |
| PfeI | GAWTC | 5 cut(s) | 119, 137, 361, 407, 484 |
| PkrI | GCNGC | 4 cut(s) | 145, 264, 322, 550 |
| PleI | GAGTC | 1 cut(s) | 307 |
| PpsI | GAGTC | 1 cut(s) | 307 |
| Psp124BI | GAGCTC | 1 cut(s) | 726 |
| Psp6I | CCWGG | 1 cut(s) | 12 |
| PspGI | CCWGG | 1 cut(s) | 12 |
| RseI | CAYNNNNRTG | 1 cut(s) | 375 |
| SacI | GAGCTC | 1 cut(s) | 726 |
| SatI | GCNGC | 4 cut(s) | 144, 263, 321, 549 |
| Sau3AI | GATC | 2 cut(s) | 196, 430 |
| SchI | GAGTC | 1 cut(s) | 308 |
| ScrFI | CCNGG | 2 cut(s) | 14, 355 |
| SduI | GDGCHC | 1 cut(s) | 726 |
| SetI | ASST | 6 cut(s) | 294, 425, 542, 565, 679, 726 |
| SfaNI | GCATC | 1 cut(s) | 232 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 375 |
| SmlI | CTYRAG | 1 cut(s) | 752 |
| SmoI | CTYRAG | 1 cut(s) | 752 |
| Sse9I | AATT | 2 cut(s) | 324, 702 |
| SsiI | CCGC | 2 cut(s) | 494, 549 |
| SstI | GAGCTC | 1 cut(s) | 726 |
| StyD4I | CCNGG | 2 cut(s) | 12, 353 |
| StyI | CCWWGG | 1 cut(s) | 108 |
| TaqI | TCGA | 2 cut(s) | 92, 302 |
| TasI | AATT | 2 cut(s) | 324, 702 |
| TauI | GCSGC | 1 cut(s) | 551 |
| TfiI | GAWTC | 5 cut(s) | 119, 137, 361, 407, 484 |
| TseFI | GTSAC | 1 cut(s) | 525 |
| TseI | GCWGC | 3 cut(s) | 143, 262, 320 |
| Tsp45I | GTSAC | 1 cut(s) | 525 |
| TspDTI | ATGAA | 1 cut(s) | 723 |
| TspGWI | ACGGA | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 1 cut(s) | 564 |