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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 113 |
| AccI | GTMKAC | 1 cut(s) | 261 |
| AcoI | YGGCCR | 1 cut(s) | 184 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 127, 159 |
| AluBI | AGCT | 1 cut(s) | 21 |
| AluI | AGCT | 1 cut(s) | 21 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AoxI | GGCC | 1 cut(s) | 184 |
| ApeKI | GCWGC | 2 cut(s) | 18, 21 |
| AspS9I | GGNCC | 1 cut(s) | 271 |
| AsuHPI | GGTGA | 1 cut(s) | 212 |
| AvaII | GGWCC | 1 cut(s) | 271 |
| BalI | TGGCCA | 1 cut(s) | 186 |
| BanI | GGYRCC | 1 cut(s) | 113 |
| BbsI | GAAGAC | 1 cut(s) | 258 |
| BbvI | GCAGC | 2 cut(s) | 8, 30 |
| BccI | CCATC | 1 cut(s) | 67 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BisI | GCNGC | 2 cut(s) | 19, 22 |
| BlsI | GCNGC | 2 cut(s) | 20, 23 |
| Bme18I | GGWCC | 1 cut(s) | 271 |
| BmgT120I | GGNCC | 1 cut(s) | 271 |
| BmiI | GGNNCC | 2 cut(s) | 115, 273 |
| BmsI | GCATC | 3 cut(s) | 33, 39, 216 |
| BpiI | GAAGAC | 1 cut(s) | 258 |
| BsaBI | GATNNNNATC | 1 cut(s) | 230 |
| BsaWI | WCCGGW | 1 cut(s) | 222 |
| Bse1I | ACTGG | 1 cut(s) | 115 |
| Bse8I | GATNNNNATC | 1 cut(s) | 230 |
| BseGI | GGATG | 1 cut(s) | 231 |
| BseJI | GATNNNNATC | 1 cut(s) | 230 |
| BseMII | CTCAG | 1 cut(s) | 225 |
| BseNI | ACTGG | 1 cut(s) | 115 |
| BseRI | GAGGAG | 1 cut(s) | 298 |
| BseXI | GCAGC | 2 cut(s) | 8, 30 |
| BshFI | GGCC | 1 cut(s) | 186 |
| BshNI | GGYRCC | 1 cut(s) | 113 |
| BsiSI | CCGG | 1 cut(s) | 223 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmI | GAATGC | 1 cut(s) | 142 |
| BsnI | GGCC | 1 cut(s) | 186 |
| Bsp143I | GATC | 1 cut(s) | 231 |
| BspANI | GGCC | 1 cut(s) | 186 |
| BspCNI | CTCAG | 1 cut(s) | 224 |
| BspLI | GGNNCC | 2 cut(s) | 115, 273 |
| BspT107I | GGYRCC | 1 cut(s) | 113 |
| BsrI | ACTGG | 1 cut(s) | 115 |
| BssMI | GATC | 1 cut(s) | 231 |
| Bst4CI | ACNGT | 2 cut(s) | 101, 259 |
| BstDEI | CTNAG | 1 cut(s) | 211 |
| BstF5I | GGATG | 1 cut(s) | 231 |
| BstKTI | GATC | 1 cut(s) | 234 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 1 cut(s) | 231 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 27 |
| BstV1I | GCAGC | 2 cut(s) | 8, 30 |
| BstV2I | GAAGAC | 1 cut(s) | 258 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 50 |
| BsuRI | GGCC | 1 cut(s) | 186 |
| BtsCI | GGATG | 1 cut(s) | 231 |
| Cfr13I | GGNCC | 1 cut(s) | 271 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 57, 92 |
| CviAII | CATG | 2 cut(s) | 82, 268 |
| CviJI | RGCY | 5 cut(s) | 21, 42, 158, 166, 186 |
| CviKI_1 | RGCY | 5 cut(s) | 21, 42, 158, 166, 186 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 1 cut(s) | 211 |
| DpnI | GATC | 1 cut(s) | 233 |
| DpnII | GATC | 1 cut(s) | 231 |
| EaeI | YGGCCR | 1 cut(s) | 184 |
| Eco47I | GGWCC | 1 cut(s) | 271 |
| FaeI | CATG | 2 cut(s) | 85, 271 |
| FaiI | YATR | 8 cut(s) | 36, 38, 51, 83, 95, 205, 207, 269 |
| FatI | CATG | 2 cut(s) | 81, 267 |
| FblI | GTMKAC | 1 cut(s) | 261 |
| Fnu4HI | GCNGC | 2 cut(s) | 19, 22 |
| FokI | GGATG | 1 cut(s) | 238 |
| Fsp4HI | GCNGC | 2 cut(s) | 19, 22 |
| GluI | GCNGC | 2 cut(s) | 19, 22 |
| HaeIII | GGCC | 1 cut(s) | 186 |
| HapII | CCGG | 1 cut(s) | 223 |
| Hin1II | CATG | 2 cut(s) | 85, 271 |
| HincII | GTYRAC | 1 cut(s) | 319 |
| HindII | GTYRAC | 1 cut(s) | 319 |
| HpaII | CCGG | 1 cut(s) | 223 |
| HphI | GGTGA | 1 cut(s) | 212 |
| Hpy166II | GTNNAC | 3 cut(s) | 79, 262, 319 |
| Hpy8I | GTNNAC | 3 cut(s) | 79, 262, 319 |
| HpyCH4III | ACNGT | 2 cut(s) | 101, 259 |
| HpyCH4V | TGCA | 2 cut(s) | 24, 152 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 27 |
| HpyF3I | CTNAG | 1 cut(s) | 211 |
| Hsp92II | CATG | 2 cut(s) | 85, 271 |
| Kzo9I | GATC | 1 cut(s) | 231 |
| LpnPI | CCDG | 4 cut(s) | 96, 198, 200, 236 |
| Lsp1109I | GCAGC | 2 cut(s) | 8, 30 |
| LweI | GCATC | 3 cut(s) | 33, 39, 216 |
| MaeIII | GTNAC | 1 cut(s) | 218 |
| MalI | GATC | 1 cut(s) | 233 |
| MboI | GATC | 1 cut(s) | 231 |
| MboII | GAAGA | 3 cut(s) | 260, 263, 319 |
| MfeI | CAATTG | 1 cut(s) | 135 |
| MlsI | TGGCCA | 1 cut(s) | 186 |
| MluCI | AATT | 2 cut(s) | 135, 291 |
| MluNI | TGGCCA | 1 cut(s) | 186 |
| MmeI | TCCRAC | 1 cut(s) | 67 |
| MnlI | CCTC | 2 cut(s) | 54, 276 |
| Mox20I | TGGCCA | 1 cut(s) | 186 |
| MscI | TGGCCA | 1 cut(s) | 186 |
| MseI | TTAA | 1 cut(s) | 278 |
| MslI | CAYNNNNRTG | 3 cut(s) | 35, 48, 147 |
| Msp20I | TGGCCA | 1 cut(s) | 186 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| MspI | CCGG | 1 cut(s) | 223 |
| MunI | CAATTG | 1 cut(s) | 135 |
| Mva1269I | GAATGC | 1 cut(s) | 142 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 27 |
| NdeII | GATC | 1 cut(s) | 231 |
| NlaIII | CATG | 2 cut(s) | 85, 271 |
| NlaIV | GGNNCC | 2 cut(s) | 115, 273 |
| NmuCI | GTSAC | 1 cut(s) | 218 |
| PctI | GAATGC | 1 cut(s) | 142 |
| PflFI | GACNNNGTC | 1 cut(s) | 257 |
| PkrI | GCNGC | 2 cut(s) | 20, 23 |
| PspN4I | GGNNCC | 2 cut(s) | 115, 273 |
| PspPI | GGNCC | 1 cut(s) | 271 |
| PsyI | GACNNNGTC | 1 cut(s) | 257 |
| PvuII | CAGCTG | 1 cut(s) | 21 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| RseI | CAYNNNNRTG | 3 cut(s) | 35, 48, 147 |
| SaqAI | TTAA | 1 cut(s) | 278 |
| SatI | GCNGC | 2 cut(s) | 19, 22 |
| Sau3AI | GATC | 1 cut(s) | 231 |
| Sau96I | GGNCC | 1 cut(s) | 271 |
| SetI | ASST | 3 cut(s) | 23, 48, 217 |
| SfaNI | GCATC | 3 cut(s) | 33, 39, 216 |
| SinI | GGWCC | 1 cut(s) | 271 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 35, 48, 147 |
| Sse9I | AATT | 2 cut(s) | 135, 291 |
| TaaI | ACNGT | 2 cut(s) | 101, 259 |
| TaqI | TCGA | 1 cut(s) | 246 |
| TasI | AATT | 2 cut(s) | 135, 291 |
| TatI | WGTACW | 1 cut(s) | 101 |
| Tru1I | TTAA | 1 cut(s) | 278 |
| Tru9I | TTAA | 1 cut(s) | 278 |
| TseFI | GTSAC | 1 cut(s) | 218 |
| TseI | GCWGC | 2 cut(s) | 18, 21 |
| Tsp45I | GTSAC | 1 cut(s) | 218 |
| TspDTI | ATGAA | 2 cut(s) | 17, 256 |
| Tth111I | GACNNNGTC | 1 cut(s) | 257 |
| VpaK11BI | GGWCC | 1 cut(s) | 271 |
| XmiI | GTMKAC | 1 cut(s) | 261 |