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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 145 |
| AccII | CGCG | 1 cut(s) | 205 |
| AciI | CCGC | 1 cut(s) | 527 |
| AclWI | GGATC | 2 cut(s) | 158, 171 |
| AcyI | GRCGYC | 1 cut(s) | 418 |
| AfaI | GTAC | 2 cut(s) | 607, 747 |
| AflII | CTTAAG | 1 cut(s) | 62 |
| AflIII | ACRYGT | 1 cut(s) | 748 |
| AgsI | TTSAA | 4 cut(s) | 154, 301, 437, 755 |
| AluBI | AGCT | 1 cut(s) | 16 |
| AluI | AGCT | 1 cut(s) | 16 |
| AlwI | GGATC | 2 cut(s) | 158, 171 |
| AoxI | GGCC | 2 cut(s) | 240, 580 |
| ApeKI | GCWGC | 3 cut(s) | 16, 539, 551 |
| AspLEI | GCGC | 1 cut(s) | 205 |
| AspS9I | GGNCC | 1 cut(s) | 581 |
| AxyI | CCTNAGG | 2 cut(s) | 141, 168 |
| BamHI | GGATCC | 1 cut(s) | 163 |
| BanI | GGYRCC | 1 cut(s) | 145 |
| BbsI | GAAGAC | 1 cut(s) | 18 |
| BbvI | GCAGC | 3 cut(s) | 3, 551, 563 |
| BccI | CCATC | 4 cut(s) | 133, 284, 302, 593 |
| BceAI | ACGGC | 1 cut(s) | 96 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 96, 130 |
| BfaI | CTAG | 3 cut(s) | 84, 414, 642 |
| BfrI | CTTAAG | 1 cut(s) | 62 |
| BglII | AGATCT | 1 cut(s) | 508 |
| BisI | GCNGC | 3 cut(s) | 17, 540, 552 |
| BlsI | GCNGC | 3 cut(s) | 18, 541, 553 |
| BmgT120I | GGNCC | 1 cut(s) | 581 |
| BmiI | GGNNCC | 3 cut(s) | 147, 165, 583 |
| BmsI | GCATC | 1 cut(s) | 638 |
| BpiI | GAAGAC | 1 cut(s) | 18 |
| Bsa29I | ATCGAT | 1 cut(s) | 177 |
| BsaHI | GRCGYC | 1 cut(s) | 418 |
| BsaJI | CCNNGG | 2 cut(s) | 330, 657 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 369, 399 |
| Bse21I | CCTNAGG | 2 cut(s) | 141, 168 |
| BseCI | ATCGAT | 1 cut(s) | 177 |
| BseDI | CCNNGG | 2 cut(s) | 330, 657 |
| BseGI | GGATG | 3 cut(s) | 300, 344, 585 |
| BseMII | CTCAG | 2 cut(s) | 624, 626 |
| BseRI | GAGGAG | 3 cut(s) | 384, 491, 600 |
| BseXI | GCAGC | 3 cut(s) | 3, 551, 563 |
| BseYI | CCCAGC | 1 cut(s) | 620 |
| Bsh1236I | CGCG | 1 cut(s) | 205 |
| Bsh1285I | CGRYCG | 1 cut(s) | 181 |
| BshFI | GGCC | 2 cut(s) | 242, 582 |
| BshNI | GGYRCC | 1 cut(s) | 145 |
| BshVI | ATCGAT | 1 cut(s) | 177 |
| BsiEI | CGRYCG | 1 cut(s) | 181 |
| BsmI | GAATGC | 2 cut(s) | 631, 761 |
| BsnI | GGCC | 2 cut(s) | 242, 582 |
| Bsp143I | GATC | 4 cut(s) | 58, 163, 178, 508 |
| Bsp19I | CCATGG | 1 cut(s) | 330 |
| BspACI | CCGC | 1 cut(s) | 527 |
| BspANI | GGCC | 2 cut(s) | 242, 582 |
| BspCNI | CTCAG | 2 cut(s) | 625, 625 |
| BspDI | ATCGAT | 1 cut(s) | 177 |
| BspFNI | CGCG | 1 cut(s) | 205 |
| BspHI | TCATGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 3 cut(s) | 147, 165, 583 |
| BspPI | GGATC | 2 cut(s) | 158, 171 |
| BspT107I | GGYRCC | 1 cut(s) | 145 |
| BspTI | CTTAAG | 1 cut(s) | 62 |
| BssECI | CCNNGG | 2 cut(s) | 330, 657 |
| BssMI | GATC | 4 cut(s) | 58, 163, 178, 508 |
| BssNI | GRCGYC | 1 cut(s) | 418 |
| BssT1I | CCWWGG | 2 cut(s) | 330, 657 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 397 |
| Bst6I | CTCTTC | 3 cut(s) | 355, 418, 432 |
| BstACI | GRCGYC | 1 cut(s) | 418 |
| BstAFI | CTTAAG | 1 cut(s) | 62 |
| BstDEI | CTNAG | 4 cut(s) | 141, 168, 612, 633 |
| BstDSI | CCRYGG | 1 cut(s) | 330 |
| BstF5I | GGATG | 3 cut(s) | 300, 344, 585 |
| BstFNI | CGCG | 1 cut(s) | 205 |
| BstHHI | GCGC | 1 cut(s) | 205 |
| BstKTI | GATC | 4 cut(s) | 61, 166, 181, 511 |
| BstMBI | GATC | 4 cut(s) | 58, 163, 178, 508 |
| BstMCI | CGRYCG | 1 cut(s) | 181 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 548, 626 |
| BstNSI | RCATGY | 1 cut(s) | 752 |
| BstUI | CGCG | 1 cut(s) | 205 |
| BstV1I | GCAGC | 3 cut(s) | 3, 551, 563 |
| BstV2I | GAAGAC | 1 cut(s) | 18 |
| BstX2I | RGATCY | 2 cut(s) | 163, 508 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 250, 337 |
| BstYI | RGATCY | 2 cut(s) | 163, 508 |
| Bsu15I | ATCGAT | 1 cut(s) | 177 |
| Bsu36I | CCTNAGG | 2 cut(s) | 141, 168 |
| BsuRI | GGCC | 2 cut(s) | 242, 582 |
| BsuTUI | ATCGAT | 1 cut(s) | 177 |
| BtgI | CCRYGG | 1 cut(s) | 330 |
| BtsCI | GGATG | 3 cut(s) | 300, 344, 585 |
| BtsIMutI | CAGTG | 1 cut(s) | 393 |
| CciI | TCATGA | 1 cut(s) | 703 |
| CfoI | GCGC | 1 cut(s) | 205 |
| Cfr13I | GGNCC | 1 cut(s) | 581 |
| ClaI | ATCGAT | 1 cut(s) | 177 |
| CseI | GACGC | 1 cut(s) | 426 |
| Csp6I | GTAC | 2 cut(s) | 606, 746 |
| CviAII | CATG | 5 cut(s) | 331, 353, 670, 704, 749 |
| CviJI | RGCY | 9 cut(s) | 16, 83, 88, 242, 443, 554, 582, 641, 732 |
| CviKI_1 | RGCY | 9 cut(s) | 16, 83, 88, 242, 443, 554, 582, 641, 732 |
| CviQI | GTAC | 2 cut(s) | 606, 746 |
| DdeI | CTNAG | 4 cut(s) | 141, 168, 612, 633 |
| DpnI | GATC | 4 cut(s) | 60, 165, 180, 510 |
| DpnII | GATC | 4 cut(s) | 58, 163, 178, 508 |
| Eam1104I | CTCTTC | 3 cut(s) | 355, 418, 432 |
| EarI | CTCTTC | 3 cut(s) | 355, 418, 432 |
| EciI | GGCGGA | 1 cut(s) | 542 |
| Eco130I | CCWWGG | 2 cut(s) | 330, 657 |
| Eco81I | CCTNAGG | 2 cut(s) | 141, 168 |
| EcoT14I | CCWWGG | 2 cut(s) | 330, 657 |
| EcoT22I | ATGCAT | 1 cut(s) | 631 |
| ErhI | CCWWGG | 2 cut(s) | 330, 657 |
| FaeI | CATG | 5 cut(s) | 334, 356, 673, 707, 752 |
| FaiI | YATR | 7 cut(s) | 332, 354, 384, 671, 699, 705, 750 |
| FatI | CATG | 5 cut(s) | 330, 352, 669, 703, 748 |
| Fnu4HI | GCNGC | 3 cut(s) | 17, 540, 552 |
| FokI | GGATG | 3 cut(s) | 307, 331, 572 |
| Fsp4HI | GCNGC | 3 cut(s) | 17, 540, 552 |
| FspBI | CTAG | 3 cut(s) | 84, 414, 642 |
| GlaI | GCGC | 1 cut(s) | 204 |
| GluI | GCNGC | 3 cut(s) | 17, 540, 552 |
| GsaI | CCCAGC | 1 cut(s) | 624 |
| HaeIII | GGCC | 2 cut(s) | 242, 582 |
| HgaI | GACGC | 1 cut(s) | 426 |
| HhaI | GCGC | 1 cut(s) | 205 |
| Hin1I | GRCGYC | 1 cut(s) | 418 |
| Hin1II | CATG | 5 cut(s) | 334, 356, 673, 707, 752 |
| Hin6I | GCGC | 1 cut(s) | 203 |
| HinP1I | GCGC | 1 cut(s) | 203 |
| HincII | GTYRAC | 2 cut(s) | 102, 327 |
| HindII | GTYRAC | 2 cut(s) | 102, 327 |
| HinfI | GANTC | 2 cut(s) | 388, 677 |
| Hpy166II | GTNNAC | 2 cut(s) | 102, 327 |
| Hpy188I | TCNGA | 5 cut(s) | 58, 349, 615, 634, 682 |
| Hpy188III | TCNNGA | 2 cut(s) | 219, 704 |
| Hpy8I | GTNNAC | 2 cut(s) | 102, 327 |
| HpyAV | CCTTC | 1 cut(s) | 295 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 397 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 107, 539, 629 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 548, 626 |
| HpyF3I | CTNAG | 4 cut(s) | 141, 168, 612, 633 |
| Hsp92I | GRCGYC | 1 cut(s) | 418 |
| Hsp92II | CATG | 5 cut(s) | 334, 356, 673, 707, 752 |
| HspAI | GCGC | 1 cut(s) | 203 |
| Kzo9I | GATC | 4 cut(s) | 58, 163, 178, 508 |
| LpnPI | CCDG | 3 cut(s) | 63, 204, 606 |
| Lsp1109I | GCAGC | 3 cut(s) | 3, 551, 563 |
| LweI | GCATC | 1 cut(s) | 638 |
| MaeI | CTAG | 3 cut(s) | 84, 414, 642 |
| MaeIII | GTNAC | 3 cut(s) | 76, 385, 502 |
| MalI | GATC | 4 cut(s) | 60, 165, 180, 510 |
| MboI | GATC | 4 cut(s) | 58, 163, 178, 508 |
| MboII | GAAGA | 9 cut(s) | 18, 21, 79, 208, 372, 435, 449, 686, 734 |
| MfeI | CAATTG | 1 cut(s) | 248 |
| MflI | RGATCY | 2 cut(s) | 163, 508 |
| MluCI | AATT | 4 cut(s) | 248, 261, 269, 763 |
| MlyI | GAGTC | 1 cut(s) | 382 |
| Mph1103I | ATGCAT | 1 cut(s) | 631 |
| MseI | TTAA | 4 cut(s) | 63, 272, 405, 459 |
| MslI | CAYNNNNRTG | 1 cut(s) | 702 |
| MspCI | CTTAAG | 1 cut(s) | 62 |
| MunI | CAATTG | 1 cut(s) | 248 |
| Mva1269I | GAATGC | 2 cut(s) | 631, 761 |
| MvnI | CGCG | 1 cut(s) | 205 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 548, 626 |
| NcoI | CCATGG | 1 cut(s) | 330 |
| NdeII | GATC | 4 cut(s) | 58, 163, 178, 508 |
| NlaIII | CATG | 5 cut(s) | 334, 356, 673, 707, 752 |
| NlaIV | GGNNCC | 3 cut(s) | 147, 165, 583 |
| NmuCI | GTSAC | 3 cut(s) | 76, 385, 502 |
| NsiI | ATGCAT | 1 cut(s) | 631 |
| NspI | RCATGY | 1 cut(s) | 752 |
| PagI | TCATGA | 1 cut(s) | 703 |
| PciI | ACATGT | 1 cut(s) | 748 |
| PctI | GAATGC | 2 cut(s) | 631, 761 |
| PfeI | GAWTC | 1 cut(s) | 677 |
| PkrI | GCNGC | 3 cut(s) | 18, 541, 553 |
| Ple19I | CGATCG | 1 cut(s) | 181 |
| PleI | GAGTC | 1 cut(s) | 382 |
| PpsI | GAGTC | 1 cut(s) | 382 |
| PscI | ACATGT | 1 cut(s) | 748 |
| PspFI | CCCAGC | 1 cut(s) | 620 |
| PspN4I | GGNNCC | 3 cut(s) | 147, 165, 583 |
| PspPI | GGNCC | 1 cut(s) | 581 |
| PsuI | RGATCY | 2 cut(s) | 163, 508 |
| PvuI | CGATCG | 1 cut(s) | 181 |
| RsaI | GTAC | 2 cut(s) | 607, 747 |
| RsaNI | GTAC | 2 cut(s) | 606, 746 |
| RseI | CAYNNNNRTG | 1 cut(s) | 702 |
| SaqAI | TTAA | 4 cut(s) | 63, 272, 405, 459 |
| SatI | GCNGC | 3 cut(s) | 17, 540, 552 |
| Sau3AI | GATC | 4 cut(s) | 58, 163, 178, 508 |
| Sau96I | GGNCC | 1 cut(s) | 581 |
| SchI | GAGTC | 1 cut(s) | 382 |
| SetI | ASST | 6 cut(s) | 18, 306, 382, 415, 536, 747 |
| SfaNI | GCATC | 1 cut(s) | 638 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 702 |
| SmlI | CTYRAG | 1 cut(s) | 62 |
| SmoI | CTYRAG | 1 cut(s) | 62 |
| Sse9I | AATT | 4 cut(s) | 248, 261, 269, 763 |
| SsiI | CCGC | 1 cut(s) | 527 |
| SspMI | CTAG | 3 cut(s) | 84, 414, 642 |
| StyI | CCWWGG | 2 cut(s) | 330, 657 |
| TaaI | ACNGT | 2 cut(s) | 150, 397 |
| TaqI | TCGA | 2 cut(s) | 116, 177 |
| TasI | AATT | 4 cut(s) | 248, 261, 269, 763 |
| TfiI | GAWTC | 1 cut(s) | 677 |
| Tru1I | TTAA | 4 cut(s) | 63, 272, 405, 459 |
| Tru9I | TTAA | 4 cut(s) | 63, 272, 405, 459 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseFI | GTSAC | 3 cut(s) | 76, 385, 502 |
| TseI | GCWGC | 3 cut(s) | 16, 539, 551 |
| Tsp45I | GTSAC | 3 cut(s) | 76, 385, 502 |
| TspDTI | ATGAA | 3 cut(s) | 249, 282, 692 |
| TspRI | CASTG | 1 cut(s) | 400 |
| Vha464I | CTTAAG | 1 cut(s) | 62 |
| XceI | RCATGY | 1 cut(s) | 752 |
| XspI | CTAG | 3 cut(s) | 84, 414, 642 |
| Zsp2I | ATGCAT | 1 cut(s) | 631 |