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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 577 |
| AccI | GTMKAC | 1 cut(s) | 849 |
| AccII | CGCG | 1 cut(s) | 684 |
| AccIII | TCCGGA | 1 cut(s) | 1101 |
| AciI | CCGC | 1 cut(s) | 981 |
| AclWI | GGATC | 7 cut(s) | 266, 351, 785, 818, 831, 1016, 1029 |
| AcuI | CTGAAG | 1 cut(s) | 723 |
| AcyI | GRCGYC | 1 cut(s) | 578 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 631, 833, 1031 |
| AflII | CTTAAG | 1 cut(s) | 184 |
| AgsI | TTSAA | 5 cut(s) | 73, 115, 140, 551, 567 |
| AjnI | CCWGG | 3 cut(s) | 22, 832, 1062 |
| AluBI | AGCT | 6 cut(s) | 99, 247, 332, 336, 743, 1070 |
| AluI | AGCT | 6 cut(s) | 99, 247, 332, 336, 743, 1070 |
| Alw26I | GTCTC | 2 cut(s) | 140, 800 |
| AlwI | GGATC | 7 cut(s) | 266, 351, 785, 818, 831, 1016, 1029 |
| Ama87I | CYCGRG | 2 cut(s) | 14, 909 |
| Aor13HI | TCCGGA | 1 cut(s) | 1101 |
| AoxI | GGCC | 2 cut(s) | 10, 180 |
| ApaI | GGGCCC | 1 cut(s) | 14 |
| ApeKI | GCWGC | 1 cut(s) | 336 |
| AseI | ATTAAT | 1 cut(s) | 257 |
| AspLEI | GCGC | 3 cut(s) | 580, 684, 999 |
| AspS9I | GGNCC | 2 cut(s) | 10, 11 |
| AsuHPI | GGTGA | 4 cut(s) | 43, 106, 359, 689 |
| AsuNHI | GCTAGC | 1 cut(s) | 332 |
| AvaI | CYCGRG | 2 cut(s) | 14, 909 |
| AxyI | CCTNAGG | 1 cut(s) | 630 |
| BaeGI | GKGCMC | 1 cut(s) | 14 |
| BamHI | GGATCC | 2 cut(s) | 823, 1021 |
| BanI | GGYRCC | 1 cut(s) | 577 |
| BanII | GRGCYC | 1 cut(s) | 14 |
| BbvI | GCAGC | 1 cut(s) | 323 |
| BccI | CCATC | 3 cut(s) | 151, 184, 589 |
| BceAI | ACGGC | 1 cut(s) | 753 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 607, 641 |
| BciT130I | CCWGG | 3 cut(s) | 24, 834, 1064 |
| BcoDI | GTCTC | 2 cut(s) | 140, 800 |
| BfaI | CTAG | 2 cut(s) | 198, 333 |
| BfoI | RGCGCY | 1 cut(s) | 581 |
| BfrI | CTTAAG | 1 cut(s) | 184 |
| BisI | GCNGC | 1 cut(s) | 337 |
| BlsI | GCNGC | 1 cut(s) | 338 |
| Bme1390I | CCNGG | 3 cut(s) | 24, 834, 1064 |
| BmeT110I | CYCGRG | 2 cut(s) | 14, 909 |
| BmgT120I | GGNCC | 2 cut(s) | 10, 11 |
| BmiI | GGNNCC | 5 cut(s) | 12, 13, 579, 825, 1023 |
| BmrFI | CCNGG | 3 cut(s) | 24, 834, 1064 |
| BmsI | GCATC | 1 cut(s) | 28 |
| BmtI | GCTAGC | 1 cut(s) | 336 |
| BpmI | CTGGAG | 1 cut(s) | 363 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BsaHI | GRCGYC | 1 cut(s) | 578 |
| BsaI | GGTCTC | 1 cut(s) | 800 |
| BsaJI | CCNNGG | 3 cut(s) | 59, 1029, 1053 |
| BsaWI | WCCGGW | 1 cut(s) | 1101 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 336, 366, 732, 762 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 631, 833, 1031 |
| Bse21I | CCTNAGG | 1 cut(s) | 630 |
| Bse3DI | GCAATG | 1 cut(s) | 976 |
| BseAI | TCCGGA | 1 cut(s) | 1101 |
| BseBI | CCWGG | 3 cut(s) | 24, 834, 1064 |
| BseDI | CCNNGG | 3 cut(s) | 59, 1029, 1053 |
| BseGI | GGATG | 3 cut(s) | 19, 195, 379 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 631, 833, 1031 |
| BseMI | GCAATG | 1 cut(s) | 976 |
| BseMII | CTCAG | 4 cut(s) | 213, 230, 621, 960 |
| BseSI | GKGCMC | 1 cut(s) | 14 |
| BseXI | GCAGC | 1 cut(s) | 323 |
| BseYI | CCCAGC | 1 cut(s) | 965 |
| Bsh1236I | CGCG | 1 cut(s) | 684 |
| Bsh1285I | CGRYCG | 1 cut(s) | 109 |
| BshFI | GGCC | 2 cut(s) | 12, 182 |
| BshNI | GGYRCC | 1 cut(s) | 577 |
| BsiEI | CGRYCG | 1 cut(s) | 109 |
| BsiHKCI | CYCGRG | 2 cut(s) | 14, 909 |
| BsiSI | CCGG | 1 cut(s) | 1102 |
| BslFI | GGGAC | 1 cut(s) | 1022 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 115, 367, 390, 631, 833, 1031 |
| BsmAI | GTCTC | 2 cut(s) | 140, 800 |
| BsmFI | GGGAC | 1 cut(s) | 1022 |
| BsmI | GAATGC | 1 cut(s) | 983 |
| BsnI | GGCC | 2 cut(s) | 12, 182 |
| Bso31I | GGTCTC | 1 cut(s) | 800 |
| BsoBI | CYCGRG | 2 cut(s) | 14, 909 |
| Bsp120I | GGGCCC | 1 cut(s) | 10 |
| Bsp1286I | GDGCHC | 1 cut(s) | 14 |
| Bsp13I | TCCGGA | 1 cut(s) | 1101 |
| Bsp143I | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| BspACI | CCGC | 1 cut(s) | 981 |
| BspANI | GGCC | 2 cut(s) | 12, 182 |
| BspCNI | CTCAG | 4 cut(s) | 214, 231, 622, 959 |
| BspEI | TCCGGA | 1 cut(s) | 1101 |
| BspFNI | CGCG | 1 cut(s) | 684 |
| BspHI | TCATGA | 1 cut(s) | 1002 |
| BspLI | GGNNCC | 5 cut(s) | 12, 13, 579, 825, 1023 |
| BspOI | GCTAGC | 1 cut(s) | 336 |
| BspPI | GGATC | 7 cut(s) | 266, 351, 785, 818, 831, 1016, 1029 |
| BspT107I | GGYRCC | 1 cut(s) | 577 |
| BspTI | CTTAAG | 1 cut(s) | 184 |
| BspTNI | GGTCTC | 1 cut(s) | 800 |
| BsrDI | GCAATG | 1 cut(s) | 976 |
| BssECI | CCNNGG | 3 cut(s) | 59, 1029, 1053 |
| BssMI | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| BssNI | GRCGYC | 1 cut(s) | 578 |
| BssT1I | CCWWGG | 3 cut(s) | 59, 1029, 1053 |
| Bst2UI | CCWGG | 3 cut(s) | 24, 834, 1064 |
| Bst4CI | ACNGT | 5 cut(s) | 110, 643, 748, 811, 878 |
| Bst6I | CTCTTC | 7 cut(s) | 138, 171, 405, 432, 459, 486, 849 |
| BstACI | GRCGYC | 1 cut(s) | 578 |
| BstAFI | CTTAAG | 1 cut(s) | 184 |
| BstC8I | GCNNGC | 3 cut(s) | 281, 334, 724 |
| BstDEI | CTNAG | 5 cut(s) | 165, 222, 239, 630, 946 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 629, 831 |
| BstF5I | GGATG | 3 cut(s) | 19, 195, 379 |
| BstFNI | CGCG | 1 cut(s) | 684 |
| BstH2I | RGCGCY | 1 cut(s) | 581 |
| BstHHI | GCGC | 3 cut(s) | 580, 684, 999 |
| BstKTI | GATC | 5 cut(s) | 274, 359, 780, 826, 1024 |
| BstMAI | GTCTC | 2 cut(s) | 140, 800 |
| BstMBI | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| BstMCI | CGRYCG | 1 cut(s) | 109 |
| BstNI | CCWGG | 3 cut(s) | 24, 834, 1064 |
| BstNSI | RCATGY | 1 cut(s) | 283 |
| BstSCI | CCNGG | 3 cut(s) | 22, 832, 1062 |
| BstSLI | GKGCMC | 1 cut(s) | 14 |
| BstUI | CGCG | 1 cut(s) | 684 |
| BstV1I | GCAGC | 1 cut(s) | 323 |
| BstX2I | RGATCY | 4 cut(s) | 356, 777, 823, 1021 |
| BstYI | RGATCY | 4 cut(s) | 356, 777, 823, 1021 |
| Bsu36I | CCTNAGG | 1 cut(s) | 630 |
| BsuRI | GGCC | 2 cut(s) | 12, 182 |
| BtsCI | GGATG | 3 cut(s) | 19, 195, 379 |
| BtsIMutI | CAGTG | 1 cut(s) | 883 |
| Cac8I | GCNNGC | 3 cut(s) | 281, 334, 724 |
| CciI | TCATGA | 1 cut(s) | 1002 |
| CfoI | GCGC | 3 cut(s) | 580, 684, 999 |
| Cfr13I | GGNCC | 2 cut(s) | 10, 11 |
| CviAII | CATG | 5 cut(s) | 280, 533, 727, 1003, 1018 |
| DdeI | CTNAG | 5 cut(s) | 165, 222, 239, 630, 946 |
| DinI | GGCGCC | 1 cut(s) | 579 |
| DpnI | GATC | 5 cut(s) | 273, 358, 779, 825, 1023 |
| DpnII | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| DraI | TTTAAA | 2 cut(s) | 591, 885 |
| Eam1104I | CTCTTC | 7 cut(s) | 138, 171, 405, 432, 459, 486, 849 |
| EarI | CTCTTC | 7 cut(s) | 138, 171, 405, 432, 459, 486, 849 |
| Eco130I | CCWWGG | 3 cut(s) | 59, 1029, 1053 |
| Eco147I | AGGCCT | 1 cut(s) | 182 |
| Eco24I | GRGCYC | 1 cut(s) | 14 |
| Eco31I | GGTCTC | 1 cut(s) | 800 |
| Eco57I | CTGAAG | 1 cut(s) | 723 |
| Eco81I | CCTNAGG | 1 cut(s) | 630 |
| Eco88I | CYCGRG | 2 cut(s) | 14, 909 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 629, 831 |
| EcoO109I | RGGNCCY | 1 cut(s) | 11 |
| EcoRII | CCWGG | 3 cut(s) | 22, 832, 1062 |
| EcoT14I | CCWWGG | 3 cut(s) | 59, 1029, 1053 |
| EcoT38I | GRGCYC | 1 cut(s) | 14 |
| EgeI | GGCGCC | 1 cut(s) | 579 |
| EheI | GGCGCC | 1 cut(s) | 579 |
| ErhI | CCWWGG | 3 cut(s) | 59, 1029, 1053 |
| FaeI | CATG | 5 cut(s) | 283, 536, 730, 1006, 1021 |
| FaqI | GGGAC | 1 cut(s) | 1022 |
| FatI | CATG | 5 cut(s) | 279, 532, 726, 1002, 1017 |
| FauI | CCCGC | 1 cut(s) | 974 |
| FblI | GTMKAC | 1 cut(s) | 849 |
| Fnu4HI | GCNGC | 1 cut(s) | 337 |
| FokI | GGATG | 3 cut(s) | 6, 202, 386 |
| FriOI | GRGCYC | 1 cut(s) | 14 |
| Fsp4HI | GCNGC | 1 cut(s) | 337 |
| FspBI | CTAG | 2 cut(s) | 198, 333 |
| GlaI | GCGC | 3 cut(s) | 579, 683, 998 |
| GluI | GCNGC | 1 cut(s) | 337 |
| GsaI | CCCAGC | 1 cut(s) | 969 |
| GsuI | CTGGAG | 1 cut(s) | 363 |
| HaeII | RGCGCY | 1 cut(s) | 581 |
| HaeIII | GGCC | 2 cut(s) | 12, 182 |
| HapII | CCGG | 1 cut(s) | 1102 |
| HhaI | GCGC | 3 cut(s) | 580, 684, 999 |
| Hin1I | GRCGYC | 1 cut(s) | 578 |
| Hin1II | CATG | 5 cut(s) | 283, 536, 730, 1006, 1021 |
| Hin6I | GCGC | 3 cut(s) | 578, 682, 997 |
| HinP1I | GCGC | 3 cut(s) | 578, 682, 997 |
| HincII | GTYRAC | 1 cut(s) | 850 |
| HindII | GTYRAC | 1 cut(s) | 850 |
| HindIII | AAGCTT | 1 cut(s) | 1068 |
| HinfI | GANTC | 1 cut(s) | 241 |
| HpaII | CCGG | 1 cut(s) | 1102 |
| HphI | GGTGA | 4 cut(s) | 43, 106, 359, 689 |
| Hpy166II | GTNNAC | 2 cut(s) | 850, 874 |
| Hpy188I | TCNGA | 1 cut(s) | 325 |
| Hpy188III | TCNNGA | 8 cut(s) | 140, 238, 291, 342, 821, 871, 1003, 1102 |
| Hpy8I | GTNNAC | 2 cut(s) | 850, 874 |
| Hpy99I | CGWCG | 1 cut(s) | 854 |
| HpyAV | CCTTC | 9 cut(s) | 109, 146, 409, 436, 463, 490, 700, 796, 1035 |
| HpyCH4III | ACNGT | 5 cut(s) | 110, 643, 748, 811, 878 |
| HpyCH4IV | ACGT | 1 cut(s) | 919 |
| HpyCH4V | TGCA | 1 cut(s) | 722 |
| HpyF3I | CTNAG | 5 cut(s) | 165, 222, 239, 630, 946 |
| HpySE526I | ACGT | 1 cut(s) | 919 |
| Hsp92I | GRCGYC | 1 cut(s) | 578 |
| Hsp92II | CATG | 5 cut(s) | 283, 536, 730, 1006, 1021 |
| HspAI | GCGC | 3 cut(s) | 578, 682, 997 |
| KasI | GGCGCC | 1 cut(s) | 577 |
| Kpn2I | TCCGGA | 1 cut(s) | 1101 |
| Kzo9I | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| LmnI | GCTCC | 2 cut(s) | 229, 740 |
| Lsp1109I | GCAGC | 1 cut(s) | 323 |
| LweI | GCATC | 1 cut(s) | 28 |
| MaeI | CTAG | 2 cut(s) | 198, 333 |
| MaeII | ACGT | 1 cut(s) | 919 |
| MalI | GATC | 5 cut(s) | 273, 358, 779, 825, 1023 |
| MboI | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| MfeI | CAATTG | 2 cut(s) | 209, 654 |
| MflI | RGATCY | 4 cut(s) | 356, 777, 823, 1021 |
| MhlI | GDGCHC | 1 cut(s) | 14 |
| Mly113I | GGCGCC | 1 cut(s) | 578 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MroI | TCCGGA | 1 cut(s) | 1101 |
| MseI | TTAA | 7 cut(s) | 125, 185, 257, 285, 590, 884, 1137 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1016 |
| MspCI | CTTAAG | 1 cut(s) | 184 |
| MspI | CCGG | 1 cut(s) | 1102 |
| MspR9I | CCNGG | 3 cut(s) | 24, 834, 1064 |
| MunI | CAATTG | 2 cut(s) | 209, 654 |
| Mva1269I | GAATGC | 1 cut(s) | 983 |
| MvaI | CCWGG | 3 cut(s) | 24, 834, 1064 |
| MvnI | CGCG | 1 cut(s) | 684 |
| NarI | GGCGCC | 1 cut(s) | 578 |
| NdeII | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| NheI | GCTAGC | 1 cut(s) | 332 |
| NlaIII | CATG | 5 cut(s) | 283, 536, 730, 1006, 1021 |
| NlaIV | GGNNCC | 5 cut(s) | 12, 13, 579, 825, 1023 |
| NspI | RCATGY | 1 cut(s) | 283 |
| PaeI | GCATGC | 1 cut(s) | 283 |
| PagI | TCATGA | 1 cut(s) | 1002 |
| PceI | AGGCCT | 1 cut(s) | 182 |
| PctI | GAATGC | 1 cut(s) | 983 |
| PkrI | GCNGC | 1 cut(s) | 338 |
| PleI | GAGTC | 1 cut(s) | 249 |
| PluTI | GGCGCC | 1 cut(s) | 581 |
| PpsI | GAGTC | 1 cut(s) | 249 |
| PshBI | ATTAAT | 1 cut(s) | 257 |
| Psp6I | CCWGG | 3 cut(s) | 22, 832, 1062 |
| PspFI | CCCAGC | 1 cut(s) | 965 |
| PspGI | CCWGG | 3 cut(s) | 22, 832, 1062 |
| PspN4I | GGNNCC | 5 cut(s) | 12, 13, 579, 825, 1023 |
| PspOMI | GGGCCC | 1 cut(s) | 10 |
| PspPI | GGNCC | 2 cut(s) | 10, 11 |
| PsuI | RGATCY | 4 cut(s) | 356, 777, 823, 1021 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1016 |
| SalI | GTCGAC | 1 cut(s) | 848 |
| SaqAI | TTAA | 7 cut(s) | 125, 185, 257, 285, 590, 884, 1137 |
| SatI | GCNGC | 1 cut(s) | 337 |
| Sau3AI | GATC | 5 cut(s) | 271, 356, 777, 823, 1021 |
| Sau96I | GGNCC | 2 cut(s) | 10, 11 |
| SchI | GAGTC | 1 cut(s) | 250 |
| ScrFI | CCNGG | 3 cut(s) | 24, 834, 1064 |
| SduI | GDGCHC | 1 cut(s) | 14 |
| SfaNI | GCATC | 1 cut(s) | 28 |
| SfoI | GGCGCC | 1 cut(s) | 579 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1016 |
| SmlI | CTYRAG | 1 cut(s) | 184 |
| SmoI | CTYRAG | 1 cut(s) | 184 |
| SphI | GCATGC | 1 cut(s) | 283 |
| SseBI | AGGCCT | 1 cut(s) | 182 |
| SsiI | CCGC | 1 cut(s) | 981 |
| SspDI | GGCGCC | 1 cut(s) | 577 |
| SspI | AATATT | 1 cut(s) | 68 |
| SspMI | CTAG | 2 cut(s) | 198, 333 |
| StuI | AGGCCT | 1 cut(s) | 182 |
| StyD4I | CCNGG | 3 cut(s) | 22, 832, 1062 |
| StyI | CCWWGG | 3 cut(s) | 59, 1029, 1053 |
| TaaI | ACNGT | 5 cut(s) | 110, 643, 748, 811, 878 |
| TaiI | ACGT | 1 cut(s) | 922 |
| TaqI | TCGA | 2 cut(s) | 849, 975 |
| Tru1I | TTAA | 7 cut(s) | 125, 185, 257, 285, 590, 884, 1137 |
| Tru9I | TTAA | 7 cut(s) | 125, 185, 257, 285, 590, 884, 1137 |
| TscAI | CASTG | 1 cut(s) | 883 |
| TseI | GCWGC | 1 cut(s) | 336 |
| TspDTI | ATGAA | 9 cut(s) | 423, 450, 477, 504, 537, 991, 1062, 1110, 1122 |
| TspRI | CASTG | 1 cut(s) | 883 |
| Vha464I | CTTAAG | 1 cut(s) | 184 |
| VspI | ATTAAT | 1 cut(s) | 257 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 629, 831 |
| XceI | RCATGY | 1 cut(s) | 283 |
| XmiI | GTMKAC | 1 cut(s) | 849 |
| XspI | CTAG | 2 cut(s) | 198, 333 |