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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 608 |
| Acc36I | ACCTGC | 3 cut(s) | 189, 568, 608 |
| AccB1I | GGYRCC | 1 cut(s) | 334 |
| AccBSI | CCGCTC | 1 cut(s) | 601 |
| AccII | CGCG | 2 cut(s) | 95, 688 |
| AciI | CCGC | 5 cut(s) | 73, 601, 609, 627, 688 |
| AclWI | GGATC | 3 cut(s) | 29, 149, 703 |
| AcoI | YGGCCR | 1 cut(s) | 319 |
| AcsI | RAATTY | 1 cut(s) | 454 |
| AgsI | TTSAA | 4 cut(s) | 196, 446, 527, 553 |
| AjnI | CCWGG | 1 cut(s) | 316 |
| AleI | CACNNNNGTG | 2 cut(s) | 246, 710 |
| AluBI | AGCT | 2 cut(s) | 281, 530 |
| AluI | AGCT | 2 cut(s) | 281, 530 |
| Alw21I | GWGCWC | 2 cut(s) | 253, 283 |
| Alw26I | GTCTC | 2 cut(s) | 84, 639 |
| Alw44I | GTGCAC | 1 cut(s) | 249 |
| AlwI | GGATC | 3 cut(s) | 29, 149, 703 |
| AoxI | GGCC | 3 cut(s) | 153, 162, 319 |
| ApaI | GGGCCC | 1 cut(s) | 157 |
| ApaLI | GTGCAC | 1 cut(s) | 249 |
| ApeKI | GCWGC | 6 cut(s) | 614, 654, 657, 746, 761, 774 |
| ApoI | RAATTY | 1 cut(s) | 454 |
| AspLEI | GCGC | 3 cut(s) | 688, 734, 751 |
| AspS9I | GGNCC | 3 cut(s) | 153, 154, 162 |
| BaeGI | GKGCMC | 3 cut(s) | 123, 157, 253 |
| BalI | TGGCCA | 1 cut(s) | 321 |
| BanI | GGYRCC | 1 cut(s) | 334 |
| BanII | GRGCYC | 2 cut(s) | 157, 283 |
| BbsI | GAAGAC | 1 cut(s) | 453 |
| Bbv12I | GWGCWC | 2 cut(s) | 253, 283 |
| BbvI | GCAGC | 6 cut(s) | 601, 666, 669, 733, 748, 761 |
| BccI | CCATC | 2 cut(s) | 29, 581 |
| BceAI | ACGGC | 1 cut(s) | 149 |
| BciT130I | CCWGG | 1 cut(s) | 318 |
| BclI | TGATCA | 1 cut(s) | 238 |
| BcoDI | GTCTC | 2 cut(s) | 84, 639 |
| BfaI | CTAG | 1 cut(s) | 767 |
| BfmI | CTRYAG | 3 cut(s) | 615, 699, 775 |
| BfuAI | ACCTGC | 3 cut(s) | 189, 568, 608 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 161 |
| BisI | GCNGC | 7 cut(s) | 74, 615, 655, 658, 747, 762, 775 |
| BlsI | GCNGC | 7 cut(s) | 75, 616, 656, 659, 748, 763, 776 |
| Bme1390I | CCNGG | 1 cut(s) | 318 |
| BmgT120I | GGNCC | 3 cut(s) | 153, 154, 162 |
| BmiI | GGNNCC | 3 cut(s) | 155, 336, 352 |
| BmrFI | CCNGG | 1 cut(s) | 318 |
| BmsI | GCATC | 2 cut(s) | 164, 564 |
| BpiI | GAAGAC | 1 cut(s) | 453 |
| BpmI | CTGGAG | 1 cut(s) | 663 |
| BsaI | GGTCTC | 1 cut(s) | 639 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 335, 365 |
| Bse1I | ACTGG | 2 cut(s) | 81, 646 |
| Bse3DI | GCAATG | 1 cut(s) | 663 |
| BseBI | CCWGG | 1 cut(s) | 318 |
| BseGI | GGATG | 1 cut(s) | 112 |
| BseMI | GCAATG | 1 cut(s) | 663 |
| BseNI | ACTGG | 2 cut(s) | 81, 646 |
| BseRI | GAGGAG | 2 cut(s) | 82, 695 |
| BseSI | GKGCMC | 3 cut(s) | 123, 157, 253 |
| BseXI | GCAGC | 6 cut(s) | 601, 666, 669, 733, 748, 761 |
| BseYI | CCCAGC | 3 cut(s) | 137, 734, 751 |
| Bsh1236I | CGCG | 2 cut(s) | 95, 688 |
| BshFI | GGCC | 3 cut(s) | 155, 164, 321 |
| BshNI | GGYRCC | 1 cut(s) | 334 |
| BsiHKAI | GWGCWC | 2 cut(s) | 253, 283 |
| BsiSI | CCGG | 1 cut(s) | 19 |
| BslFI | GGGAC | 1 cut(s) | 22 |
| BsmAI | GTCTC | 2 cut(s) | 84, 639 |
| BsmBI | CGTCTC | 1 cut(s) | 84 |
| BsmFI | GGGAC | 1 cut(s) | 22 |
| BsmI | GAATGC | 1 cut(s) | 52 |
| BsnI | GGCC | 3 cut(s) | 155, 164, 321 |
| Bso31I | GGTCTC | 1 cut(s) | 639 |
| Bsp120I | GGGCCC | 1 cut(s) | 153 |
| Bsp1286I | GDGCHC | 4 cut(s) | 123, 157, 253, 283 |
| Bsp143I | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| BspACI | CCGC | 5 cut(s) | 73, 601, 609, 627, 688 |
| BspANI | GGCC | 3 cut(s) | 155, 164, 321 |
| BspFNI | CGCG | 2 cut(s) | 95, 688 |
| BspLI | GGNNCC | 3 cut(s) | 155, 336, 352 |
| BspMAI | CTGCAG | 3 cut(s) | 619, 703, 779 |
| BspMI | ACCTGC | 3 cut(s) | 189, 568, 608 |
| BspPI | GGATC | 3 cut(s) | 29, 149, 703 |
| BspT107I | GGYRCC | 1 cut(s) | 334 |
| BspTNI | GGTCTC | 1 cut(s) | 639 |
| BsrBI | CCGCTC | 1 cut(s) | 601 |
| BsrDI | GCAATG | 1 cut(s) | 663 |
| BsrI | ACTGG | 2 cut(s) | 81, 646 |
| BssMI | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| Bst2UI | CCWGG | 1 cut(s) | 318 |
| Bst4CI | ACNGT | 2 cut(s) | 100, 118 |
| BstC8I | GCNNGC | 4 cut(s) | 52, 78, 703, 779 |
| BstDEI | CTNAG | 1 cut(s) | 471 |
| BstF5I | GGATG | 1 cut(s) | 112 |
| BstFNI | CGCG | 2 cut(s) | 95, 688 |
| BstHHI | GCGC | 3 cut(s) | 688, 734, 751 |
| BstKTI | GATC | 5 cut(s) | 15, 24, 144, 241, 698 |
| BstMAI | GTCTC | 2 cut(s) | 84, 639 |
| BstMBI | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 161, 536, 633, 721 |
| BstNI | CCWGG | 1 cut(s) | 318 |
| BstNSI | RCATGY | 1 cut(s) | 548 |
| BstSCI | CCNGG | 1 cut(s) | 316 |
| BstSFI | CTRYAG | 3 cut(s) | 615, 699, 775 |
| BstSLI | GKGCMC | 3 cut(s) | 123, 157, 253 |
| BstUI | CGCG | 2 cut(s) | 95, 688 |
| BstV1I | GCAGC | 6 cut(s) | 601, 666, 669, 733, 748, 761 |
| BstV2I | GAAGAC | 1 cut(s) | 453 |
| BstX2I | RGATCY | 2 cut(s) | 21, 695 |
| BstYI | RGATCY | 2 cut(s) | 21, 695 |
| BsuRI | GGCC | 3 cut(s) | 155, 164, 321 |
| BtsCI | GGATG | 1 cut(s) | 112 |
| BveI | ACCTGC | 3 cut(s) | 189, 568, 608 |
| Cac8I | GCNNGC | 4 cut(s) | 52, 78, 703, 779 |
| CfoI | GCGC | 3 cut(s) | 688, 734, 751 |
| Cfr13I | GGNCC | 3 cut(s) | 153, 154, 162 |
| CseI | GACGC | 3 cut(s) | 101, 649, 660 |
| CviAII | CATG | 4 cut(s) | 185, 217, 545, 719 |
| DdeI | CTNAG | 1 cut(s) | 471 |
| DpnI | GATC | 5 cut(s) | 14, 23, 143, 240, 697 |
| DpnII | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| DraI | TTTAAA | 1 cut(s) | 304 |
| EaeI | YGGCCR | 1 cut(s) | 319 |
| Ecl136II | GAGCTC | 1 cut(s) | 281 |
| Eco24I | GRGCYC | 2 cut(s) | 157, 283 |
| Eco31I | GGTCTC | 1 cut(s) | 639 |
| Eco53kI | GAGCTC | 1 cut(s) | 281 |
| EcoICRI | GAGCTC | 1 cut(s) | 281 |
| EcoO109I | RGGNCCY | 1 cut(s) | 154 |
| EcoRII | CCWGG | 1 cut(s) | 316 |
| EcoT38I | GRGCYC | 2 cut(s) | 157, 283 |
| Esp3I | CGTCTC | 1 cut(s) | 84 |
| FaeI | CATG | 4 cut(s) | 188, 220, 548, 722 |
| FaiI | YATR | 6 cut(s) | 186, 218, 340, 342, 546, 720 |
| FaqI | GGGAC | 1 cut(s) | 22 |
| FatI | CATG | 4 cut(s) | 184, 216, 544, 718 |
| FauI | CCCGC | 3 cut(s) | 594, 620, 681 |
| FbaI | TGATCA | 1 cut(s) | 238 |
| Fnu4HI | GCNGC | 7 cut(s) | 74, 615, 655, 658, 747, 762, 775 |
| FokI | GGATG | 1 cut(s) | 119 |
| FriOI | GRGCYC | 2 cut(s) | 157, 283 |
| Fsp4HI | GCNGC | 7 cut(s) | 74, 615, 655, 658, 747, 762, 775 |
| FspBI | CTAG | 1 cut(s) | 767 |
| GlaI | GCGC | 3 cut(s) | 687, 733, 750 |
| GluI | GCNGC | 7 cut(s) | 74, 615, 655, 658, 747, 762, 775 |
| GsaI | CCCAGC | 3 cut(s) | 141, 738, 755 |
| GsuI | CTGGAG | 1 cut(s) | 663 |
| HaeIII | GGCC | 3 cut(s) | 155, 164, 321 |
| HapII | CCGG | 1 cut(s) | 19 |
| HgaI | GACGC | 3 cut(s) | 101, 649, 660 |
| HhaI | GCGC | 3 cut(s) | 688, 734, 751 |
| Hin1II | CATG | 4 cut(s) | 188, 220, 548, 722 |
| Hin6I | GCGC | 3 cut(s) | 686, 732, 749 |
| HinP1I | GCGC | 3 cut(s) | 686, 732, 749 |
| HincII | GTYRAC | 2 cut(s) | 114, 232 |
| HindII | GTYRAC | 2 cut(s) | 114, 232 |
| HpaII | CCGG | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 4 cut(s) | 114, 232, 251, 499 |
| Hpy188I | TCNGA | 2 cut(s) | 62, 173 |
| Hpy8I | GTNNAC | 4 cut(s) | 114, 232, 251, 499 |
| Hpy99I | CGWCG | 2 cut(s) | 100, 654 |
| HpyCH4III | ACNGT | 2 cut(s) | 100, 118 |
| HpyCH4V | TGCA | 8 cut(s) | 50, 184, 251, 577, 617, 668, 701, 777 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 161, 536, 633, 721 |
| HpyF3I | CTNAG | 1 cut(s) | 471 |
| Hsp92II | CATG | 4 cut(s) | 188, 220, 548, 722 |
| HspAI | GCGC | 3 cut(s) | 686, 732, 749 |
| Ksp22I | TGATCA | 1 cut(s) | 238 |
| Kzo9I | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| LmnI | GCTCC | 2 cut(s) | 356, 590 |
| Lsp1109I | GCAGC | 6 cut(s) | 601, 666, 669, 733, 748, 761 |
| LweI | GCATC | 2 cut(s) | 164, 564 |
| MaeI | CTAG | 1 cut(s) | 767 |
| MalI | GATC | 5 cut(s) | 14, 23, 143, 240, 697 |
| MbiI | CCGCTC | 1 cut(s) | 601 |
| MboI | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| MboII | GAAGA | 3 cut(s) | 208, 458, 495 |
| MflI | RGATCY | 2 cut(s) | 21, 695 |
| MhlI | GDGCHC | 4 cut(s) | 123, 157, 253, 283 |
| MlsI | TGGCCA | 1 cut(s) | 321 |
| MluCI | AATT | 1 cut(s) | 454 |
| MluNI | TGGCCA | 1 cut(s) | 321 |
| MmeI | TCCRAC | 2 cut(s) | 293, 673 |
| MnlI | CCTC | 8 cut(s) | 60, 63, 167, 384, 669, 673, 676, 720 |
| Mox20I | TGGCCA | 1 cut(s) | 321 |
| MscI | TGGCCA | 1 cut(s) | 321 |
| MseI | TTAA | 3 cut(s) | 303, 357, 432 |
| MslI | CAYNNNNRTG | 2 cut(s) | 246, 710 |
| Msp20I | TGGCCA | 1 cut(s) | 321 |
| MspI | CCGG | 1 cut(s) | 19 |
| MspR9I | CCNGG | 1 cut(s) | 318 |
| Mva1269I | GAATGC | 1 cut(s) | 52 |
| MvaI | CCWGG | 1 cut(s) | 318 |
| MvnI | CGCG | 2 cut(s) | 95, 688 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 161, 536, 633, 721 |
| NdeII | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| NlaIII | CATG | 4 cut(s) | 188, 220, 548, 722 |
| NlaIV | GGNNCC | 3 cut(s) | 155, 336, 352 |
| NspI | RCATGY | 1 cut(s) | 548 |
| OliI | CACNNNNGTG | 2 cut(s) | 246, 710 |
| PaqCI | CACCTGC | 1 cut(s) | 608 |
| PctI | GAATGC | 1 cut(s) | 52 |
| PkrI | GCNGC | 7 cut(s) | 75, 616, 656, 659, 748, 763, 776 |
| Psp124BI | GAGCTC | 1 cut(s) | 283 |
| Psp6I | CCWGG | 1 cut(s) | 316 |
| PspFI | CCCAGC | 3 cut(s) | 137, 734, 751 |
| PspGI | CCWGG | 1 cut(s) | 316 |
| PspN4I | GGNNCC | 3 cut(s) | 155, 336, 352 |
| PspOMI | GGGCCC | 1 cut(s) | 153 |
| PspPI | GGNCC | 3 cut(s) | 153, 154, 162 |
| PstI | CTGCAG | 3 cut(s) | 619, 703, 779 |
| PsuI | RGATCY | 2 cut(s) | 21, 695 |
| RseI | CAYNNNNRTG | 2 cut(s) | 246, 710 |
| SacI | GAGCTC | 1 cut(s) | 283 |
| SaqAI | TTAA | 3 cut(s) | 303, 357, 432 |
| SatI | GCNGC | 7 cut(s) | 74, 615, 655, 658, 747, 762, 775 |
| Sau3AI | GATC | 5 cut(s) | 12, 21, 141, 238, 695 |
| Sau96I | GGNCC | 3 cut(s) | 153, 154, 162 |
| ScrFI | CCNGG | 1 cut(s) | 318 |
| SduI | GDGCHC | 4 cut(s) | 123, 157, 253, 283 |
| SetI | ASST | 8 cut(s) | 150, 183, 283, 532, 582, 622, 731, 772 |
| SfaNI | GCATC | 2 cut(s) | 164, 564 |
| SfcI | CTRYAG | 3 cut(s) | 615, 699, 775 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 246, 710 |
| Sse9I | AATT | 1 cut(s) | 454 |
| SsiI | CCGC | 5 cut(s) | 73, 601, 609, 627, 688 |
| SspMI | CTAG | 1 cut(s) | 767 |
| SstI | GAGCTC | 1 cut(s) | 283 |
| StyD4I | CCNGG | 1 cut(s) | 316 |
| TaaI | ACNGT | 2 cut(s) | 100, 118 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TaqII | GACCGA | 2 cut(s) | 273, 663 |
| TasI | AATT | 1 cut(s) | 454 |
| TauI | GCSGC | 1 cut(s) | 76 |
| Tru1I | TTAA | 3 cut(s) | 303, 357, 432 |
| Tru9I | TTAA | 3 cut(s) | 303, 357, 432 |
| TseI | GCWGC | 6 cut(s) | 614, 654, 657, 746, 761, 774 |
| TspDTI | ATGAA | 1 cut(s) | 534 |
| VneI | GTGCAC | 1 cut(s) | 249 |
| XapI | RAATTY | 1 cut(s) | 454 |
| XceI | RCATGY | 1 cut(s) | 548 |
| XspI | CTAG | 1 cut(s) | 767 |