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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1443 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 262 |
| AccB1I | GGYRCC | 1 cut(s) | 1225 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 602 |
| AccI | GTMKAC | 1 cut(s) | 1343 |
| AccII | CGCG | 2 cut(s) | 1086, 1103 |
| AciI | CCGC | 3 cut(s) | 275, 457, 490 |
| AclWI | GGATC | 5 cut(s) | 163, 176, 394, 1031, 1044 |
| AcoI | YGGCCR | 2 cut(s) | 23, 694 |
| AcsI | RAATTY | 1 cut(s) | 1205 |
| AcuI | CTGAAG | 3 cut(s) | 473, 576, 1338 |
| AcvI | CACGTG | 2 cut(s) | 85, 100 |
| AfaI | GTAC | 2 cut(s) | 502, 1418 |
| AfeI | AGCGCT | 1 cut(s) | 553 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 602, 847 |
| AjnI | CCWGG | 1 cut(s) | 1514 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1350, 1382 |
| AluBI | AGCT | 8 cut(s) | 52, 614, 668, 749, 892, 962, 1241, 1302 |
| AluI | AGCT | 8 cut(s) | 52, 614, 668, 749, 892, 962, 1241, 1302 |
| Alw26I | GTCTC | 1 cut(s) | 177 |
| AlwI | GGATC | 5 cut(s) | 163, 176, 394, 1031, 1044 |
| Ama87I | CYCGRG | 1 cut(s) | 47 |
| Aor51HI | AGCGCT | 1 cut(s) | 553 |
| AoxI | GGCC | 5 cut(s) | 23, 93, 117, 694, 1518 |
| ApaI | GGGCCC | 1 cut(s) | 1522 |
| ApeKI | GCWGC | 1 cut(s) | 668 |
| ApoI | RAATTY | 1 cut(s) | 1205 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 334, 366 |
| AseI | ATTAAT | 1 cut(s) | 1481 |
| AspLEI | GCGC | 3 cut(s) | 554, 1086, 1105 |
| AspS9I | GGNCC | 4 cut(s) | 28, 94, 1518, 1519 |
| AsuC2I | CCSGG | 1 cut(s) | 436 |
| AsuHPI | GGTGA | 1 cut(s) | 1280 |
| AvaI | CYCGRG | 1 cut(s) | 47 |
| AvaII | GGWCC | 1 cut(s) | 28 |
| BaeGI | GKGCMC | 1 cut(s) | 1522 |
| BalI | TGGCCA | 1 cut(s) | 696 |
| BamHI | GGATCC | 2 cut(s) | 168, 1036 |
| BanI | GGYRCC | 1 cut(s) | 1225 |
| BanII | GRGCYC | 1 cut(s) | 1522 |
| BbrPI | CACGTG | 2 cut(s) | 85, 100 |
| BbsI | GAAGAC | 2 cut(s) | 311, 347 |
| BbvI | GCAGC | 1 cut(s) | 655 |
| BccI | CCATC | 4 cut(s) | 377, 1067, 1237, 1280 |
| BciT130I | CCWGG | 1 cut(s) | 1516 |
| BclI | TGATCA | 1 cut(s) | 1426 |
| BcnI | CCSGG | 1 cut(s) | 436 |
| BcoDI | GTCTC | 1 cut(s) | 177 |
| BfaI | CTAG | 4 cut(s) | 291, 537, 1067, 1555 |
| BfoI | RGCGCY | 1 cut(s) | 555 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 125 |
| BisI | GCNGC | 4 cut(s) | 276, 458, 490, 669 |
| BlsI | GCNGC | 4 cut(s) | 277, 459, 491, 670 |
| Bme1390I | CCNGG | 2 cut(s) | 436, 1516 |
| Bme18I | GGWCC | 1 cut(s) | 28 |
| BmeT110I | CYCGRG | 1 cut(s) | 47 |
| BmgT120I | GGNCC | 4 cut(s) | 28, 94, 1518, 1519 |
| BmiI | GGNNCC | 7 cut(s) | 76, 105, 170, 1038, 1227, 1314, 1520 |
| BmrFI | CCNGG | 2 cut(s) | 436, 1516 |
| BmsI | GCATC | 5 cut(s) | 76, 287, 698, 921, 1264 |
| BpiI | GAAGAC | 2 cut(s) | 311, 347 |
| BpmI | CTGGAG | 2 cut(s) | 579, 914 |
| Bpu10I | CCTNAGC | 1 cut(s) | 963 |
| BpuEI | CTTGAG | 3 cut(s) | 694, 717, 1127 |
| BpuMI | CCSGG | 1 cut(s) | 436 |
| BsaAI | YACGTR | 3 cut(s) | 85, 100, 115 |
| BsaJI | CCNNGG | 7 cut(s) | 20, 435, 697, 792, 885, 1143, 1515 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 614, 644 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 602, 847 |
| Bse1I | ACTGG | 3 cut(s) | 31, 1380, 1402 |
| Bse3DI | GCAATG | 1 cut(s) | 1232 |
| BseBI | CCWGG | 1 cut(s) | 1516 |
| BseDI | CCNNGG | 7 cut(s) | 20, 435, 697, 792, 885, 1143, 1515 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 602, 847 |
| BseMI | GCAATG | 1 cut(s) | 1232 |
| BseMII | CTCAG | 3 cut(s) | 48, 264, 977 |
| BseNI | ACTGG | 3 cut(s) | 31, 1380, 1402 |
| BseRI | GAGGAG | 1 cut(s) | 917 |
| BseSI | GKGCMC | 1 cut(s) | 1522 |
| BseXI | GCAGC | 1 cut(s) | 655 |
| Bsh1236I | CGCG | 2 cut(s) | 1086, 1103 |
| BshFI | GGCC | 5 cut(s) | 25, 95, 119, 696, 1520 |
| BshNI | GGYRCC | 1 cut(s) | 1225 |
| BsiHKCI | CYCGRG | 1 cut(s) | 47 |
| BsiSI | CCGG | 2 cut(s) | 26, 435 |
| BslFI | GGGAC | 2 cut(s) | 453, 604 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 602, 847 |
| BsmAI | GTCTC | 1 cut(s) | 177 |
| BsmFI | GGGAC | 2 cut(s) | 453, 604 |
| BsmI | GAATGC | 1 cut(s) | 1277 |
| BsnI | GGCC | 5 cut(s) | 25, 95, 119, 696, 1520 |
| BsoBI | CYCGRG | 1 cut(s) | 47 |
| Bsp120I | GGGCCC | 1 cut(s) | 1518 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1522 |
| Bsp143I | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| BspACI | CCGC | 3 cut(s) | 275, 457, 490 |
| BspANI | GGCC | 5 cut(s) | 25, 95, 119, 696, 1520 |
| BspCNI | CTCAG | 3 cut(s) | 49, 263, 976 |
| BspFNI | CGCG | 2 cut(s) | 1086, 1103 |
| BspLI | GGNNCC | 7 cut(s) | 76, 105, 170, 1038, 1227, 1314, 1520 |
| BspPI | GGATC | 5 cut(s) | 163, 176, 394, 1031, 1044 |
| BspQI | GCTCTTC | 1 cut(s) | 604 |
| BspT107I | GGYRCC | 1 cut(s) | 1225 |
| BsrDI | GCAATG | 1 cut(s) | 1232 |
| BsrI | ACTGG | 3 cut(s) | 31, 1380, 1402 |
| BssECI | CCNNGG | 7 cut(s) | 20, 435, 697, 792, 885, 1143, 1515 |
| BssMI | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| BssT1I | CCWWGG | 5 cut(s) | 20, 697, 792, 885, 1143 |
| Bst2UI | CCWGG | 1 cut(s) | 1516 |
| Bst4CI | ACNGT | 2 cut(s) | 842, 1021 |
| Bst6I | CTCTTC | 4 cut(s) | 179, 518, 604, 1182 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 466 |
| BstBAI | YACGTR | 3 cut(s) | 85, 100, 115 |
| BstC8I | GCNNGC | 5 cut(s) | 54, 462, 936, 1239, 1381 |
| BstDEI | CTNAG | 5 cut(s) | 57, 250, 548, 627, 963 |
| BstFNI | CGCG | 2 cut(s) | 1086, 1103 |
| BstH2I | RGCGCY | 1 cut(s) | 555 |
| BstHHI | GCGC | 3 cut(s) | 554, 1086, 1105 |
| BstKTI | GATC | 4 cut(s) | 171, 389, 1039, 1429 |
| BstMAI | GTCTC | 1 cut(s) | 177 |
| BstMBI | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 125, 245, 457, 466, 486, 632, 1223, 1546 |
| BstNI | CCWGG | 1 cut(s) | 1516 |
| BstNSI | RCATGY | 2 cut(s) | 464, 689 |
| BstSCI | CCNGG | 2 cut(s) | 434, 1514 |
| BstSLI | GKGCMC | 1 cut(s) | 1522 |
| BstUI | CGCG | 2 cut(s) | 1086, 1103 |
| BstV1I | GCAGC | 1 cut(s) | 655 |
| BstV2I | GAAGAC | 2 cut(s) | 311, 347 |
| BstX2I | RGATCY | 3 cut(s) | 168, 386, 1036 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 21, 892, 1024 |
| BstYI | RGATCY | 3 cut(s) | 168, 386, 1036 |
| BsuRI | GGCC | 5 cut(s) | 25, 95, 119, 696, 1520 |
| BtsI | GCAGTG | 1 cut(s) | 471 |
| BtsIMutI | CAGTG | 4 cut(s) | 38, 258, 471, 1017 |
| Cac8I | GCNNGC | 5 cut(s) | 54, 462, 936, 1239, 1381 |
| CfoI | GCGC | 3 cut(s) | 554, 1086, 1105 |
| Cfr13I | GGNCC | 4 cut(s) | 28, 94, 1518, 1519 |
| Csp6I | GTAC | 2 cut(s) | 501, 1417 |
| CviQI | GTAC | 2 cut(s) | 501, 1417 |
| DdeI | CTNAG | 5 cut(s) | 57, 250, 548, 627, 963 |
| DpnI | GATC | 4 cut(s) | 170, 388, 1038, 1428 |
| DpnII | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 262 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 262 |
| EaeI | YGGCCR | 2 cut(s) | 23, 694 |
| Eam1104I | CTCTTC | 4 cut(s) | 179, 518, 604, 1182 |
| EarI | CTCTTC | 4 cut(s) | 179, 518, 604, 1182 |
| Eco130I | CCWWGG | 5 cut(s) | 20, 697, 792, 885, 1143 |
| Eco24I | GRGCYC | 1 cut(s) | 1522 |
| Eco47I | GGWCC | 1 cut(s) | 28 |
| Eco47III | AGCGCT | 1 cut(s) | 553 |
| Eco57I | CTGAAG | 3 cut(s) | 473, 576, 1338 |
| Eco72I | CACGTG | 2 cut(s) | 85, 100 |
| Eco88I | CYCGRG | 1 cut(s) | 47 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1518 |
| EcoRII | CCWGG | 1 cut(s) | 1514 |
| EcoT14I | CCWWGG | 5 cut(s) | 20, 697, 792, 885, 1143 |
| EcoT22I | ATGCAT | 3 cut(s) | 482, 691, 1279 |
| EcoT38I | GRGCYC | 1 cut(s) | 1522 |
| ErhI | CCWWGG | 5 cut(s) | 20, 697, 792, 885, 1143 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 503, 535 |
| FaqI | GGGAC | 2 cut(s) | 453, 604 |
| FauNDI | CATATG | 1 cut(s) | 209 |
| FbaI | TGATCA | 1 cut(s) | 1426 |
| FblI | GTMKAC | 1 cut(s) | 1343 |
| Fnu4HI | GCNGC | 4 cut(s) | 276, 458, 490, 669 |
| FriOI | GRGCYC | 1 cut(s) | 1522 |
| Fsp4HI | GCNGC | 4 cut(s) | 276, 458, 490, 669 |
| FspBI | CTAG | 4 cut(s) | 291, 537, 1067, 1555 |
| GlaI | GCGC | 3 cut(s) | 553, 1085, 1104 |
| GluI | GCNGC | 4 cut(s) | 276, 458, 490, 669 |
| GsuI | CTGGAG | 2 cut(s) | 579, 914 |
| HaeII | RGCGCY | 1 cut(s) | 555 |
| HaeIII | GGCC | 5 cut(s) | 25, 95, 119, 696, 1520 |
| HapII | CCGG | 2 cut(s) | 26, 435 |
| HhaI | GCGC | 3 cut(s) | 554, 1086, 1105 |
| Hin6I | GCGC | 3 cut(s) | 552, 1084, 1103 |
| HinP1I | GCGC | 3 cut(s) | 552, 1084, 1103 |
| HincII | GTYRAC | 3 cut(s) | 838, 1344, 1471 |
| HindII | GTYRAC | 3 cut(s) | 838, 1344, 1471 |
| HinfI | GANTC | 8 cut(s) | 10, 160, 185, 428, 496, 592, 971, 1193 |
| HpaII | CCGG | 2 cut(s) | 26, 435 |
| HphI | GGTGA | 1 cut(s) | 1280 |
| Hpy166II | GTNNAC | 5 cut(s) | 503, 838, 1344, 1417, 1471 |
| Hpy188I | TCNGA | 3 cut(s) | 182, 382, 1198 |
| Hpy188III | TCNNGA | 3 cut(s) | 574, 596, 734 |
| Hpy8I | GTNNAC | 5 cut(s) | 503, 838, 1344, 1417, 1471 |
| HpyAV | CCTTC | 9 cut(s) | 85, 394, 505, 551, 758, 1050, 1429, 1485, 1525 |
| HpyCH4III | ACNGT | 2 cut(s) | 842, 1021 |
| HpyCH4IV | ACGT | 5 cut(s) | 84, 99, 114, 473, 781 |
| HpyCH4V | TGCA | 7 cut(s) | 464, 480, 671, 689, 934, 1277, 1407 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 125, 245, 457, 466, 486, 632, 1223, 1546 |
| HpyF3I | CTNAG | 5 cut(s) | 57, 250, 548, 627, 963 |
| HpySE526I | ACGT | 5 cut(s) | 84, 99, 114, 473, 781 |
| HspAI | GCGC | 3 cut(s) | 552, 1084, 1103 |
| Ksp22I | TGATCA | 1 cut(s) | 1426 |
| Kzo9I | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| LguI | GCTCTTC | 1 cut(s) | 604 |
| LmnI | GCTCC | 4 cut(s) | 103, 794, 889, 1312 |
| Lsp1109I | GCAGC | 1 cut(s) | 655 |
| LweI | GCATC | 5 cut(s) | 76, 287, 698, 921, 1264 |
| MaeI | CTAG | 4 cut(s) | 291, 537, 1067, 1555 |
| MaeII | ACGT | 5 cut(s) | 84, 99, 114, 473, 781 |
| MaeIII | GTNAC | 2 cut(s) | 253, 842 |
| MalI | GATC | 4 cut(s) | 170, 388, 1038, 1428 |
| MboI | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| MflI | RGATCY | 3 cut(s) | 168, 386, 1036 |
| MhlI | GDGCHC | 1 cut(s) | 1522 |
| MlsI | TGGCCA | 1 cut(s) | 696 |
| MluCI | AATT | 6 cut(s) | 322, 877, 1205, 1220, 1391, 1482 |
| MluNI | TGGCCA | 1 cut(s) | 696 |
| MlyI | GAGTC | 5 cut(s) | 19, 169, 179, 586, 1187 |
| MmeI | TCCRAC | 2 cut(s) | 735, 753 |
| Mox20I | TGGCCA | 1 cut(s) | 696 |
| Mph1103I | ATGCAT | 3 cut(s) | 482, 691, 1279 |
| MscI | TGGCCA | 1 cut(s) | 696 |
| MseI | TTAA | 3 cut(s) | 242, 1394, 1481 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1022, 1412 |
| Msp20I | TGGCCA | 1 cut(s) | 696 |
| MspI | CCGG | 2 cut(s) | 26, 435 |
| MspR9I | CCNGG | 2 cut(s) | 436, 1516 |
| Mva1269I | GAATGC | 1 cut(s) | 1277 |
| MvaI | CCWGG | 1 cut(s) | 1516 |
| MvnI | CGCG | 2 cut(s) | 1086, 1103 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 125, 245, 457, 466, 486, 632, 1223, 1546 |
| NciI | CCSGG | 1 cut(s) | 436 |
| NdeI | CATATG | 1 cut(s) | 209 |
| NdeII | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| NlaIV | GGNNCC | 7 cut(s) | 76, 105, 170, 1038, 1227, 1314, 1520 |
| NmuCI | GTSAC | 2 cut(s) | 253, 842 |
| NsiI | ATGCAT | 3 cut(s) | 482, 691, 1279 |
| NspI | RCATGY | 2 cut(s) | 464, 689 |
| PaeI | GCATGC | 1 cut(s) | 464 |
| PaeR7I | CTCGAG | 1 cut(s) | 47 |
| PciSI | GCTCTTC | 1 cut(s) | 604 |
| PctI | GAATGC | 1 cut(s) | 1277 |
| PfeI | GAWTC | 3 cut(s) | 428, 496, 971 |
| PflFI | GACNNNGTC | 4 cut(s) | 262, 310, 346, 848 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 602 |
| PkrI | GCNGC | 4 cut(s) | 277, 459, 491, 670 |
| PleI | GAGTC | 5 cut(s) | 18, 168, 179, 586, 1187 |
| PmaCI | CACGTG | 2 cut(s) | 85, 100 |
| PmlI | CACGTG | 2 cut(s) | 85, 100 |
| PpsI | GAGTC | 5 cut(s) | 18, 168, 179, 586, 1187 |
| Ppu21I | YACGTR | 3 cut(s) | 85, 100, 115 |
| PshBI | ATTAAT | 1 cut(s) | 1481 |
| PsiI | TTATAA | 1 cut(s) | 1443 |
| Psp6I | CCWGG | 1 cut(s) | 1514 |
| PspCI | CACGTG | 2 cut(s) | 85, 100 |
| PspGI | CCWGG | 1 cut(s) | 1514 |
| PspN4I | GGNNCC | 7 cut(s) | 76, 105, 170, 1038, 1227, 1314, 1520 |
| PspOMI | GGGCCC | 1 cut(s) | 1518 |
| PspPI | GGNCC | 4 cut(s) | 28, 94, 1518, 1519 |
| PspXI | VCTCGAGB | 1 cut(s) | 47 |
| PsuI | RGATCY | 3 cut(s) | 168, 386, 1036 |
| PsyI | GACNNNGTC | 4 cut(s) | 262, 310, 346, 848 |
| RsaI | GTAC | 2 cut(s) | 502, 1418 |
| RsaNI | GTAC | 2 cut(s) | 501, 1417 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1022, 1412 |
| SalI | GTCGAC | 1 cut(s) | 1342 |
| SapI | GCTCTTC | 1 cut(s) | 604 |
| SaqAI | TTAA | 3 cut(s) | 242, 1394, 1481 |
| SatI | GCNGC | 4 cut(s) | 276, 458, 490, 669 |
| Sau3AI | GATC | 4 cut(s) | 168, 386, 1036, 1426 |
| Sau96I | GGNCC | 4 cut(s) | 28, 94, 1518, 1519 |
| SchI | GAGTC | 5 cut(s) | 19, 169, 179, 586, 1187 |
| ScrFI | CCNGG | 2 cut(s) | 436, 1516 |
| SduI | GDGCHC | 1 cut(s) | 1522 |
| SfaNI | GCATC | 5 cut(s) | 76, 287, 698, 921, 1264 |
| Sfr274I | CTCGAG | 1 cut(s) | 47 |
| SinI | GGWCC | 1 cut(s) | 28 |
| SlaI | CTCGAG | 1 cut(s) | 47 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1022, 1412 |
| SmlI | CTYRAG | 4 cut(s) | 47, 709, 732, 1106 |
| SmoI | CTYRAG | 4 cut(s) | 47, 709, 732, 1106 |
| SphI | GCATGC | 1 cut(s) | 464 |
| Sse9I | AATT | 6 cut(s) | 322, 877, 1205, 1220, 1391, 1482 |
| SsiI | CCGC | 3 cut(s) | 275, 457, 490 |
| SspMI | CTAG | 4 cut(s) | 291, 537, 1067, 1555 |
| StyD4I | CCNGG | 2 cut(s) | 434, 1514 |
| StyI | CCWWGG | 5 cut(s) | 20, 697, 792, 885, 1143 |
| TaaI | ACNGT | 2 cut(s) | 842, 1021 |
| TaiI | ACGT | 5 cut(s) | 87, 102, 117, 476, 784 |
| TaqI | TCGA | 4 cut(s) | 8, 48, 299, 1343 |
| TasI | AATT | 6 cut(s) | 322, 877, 1205, 1220, 1391, 1482 |
| TauI | GCSGC | 3 cut(s) | 278, 460, 492 |
| TfiI | GAWTC | 3 cut(s) | 428, 496, 971 |
| Tru1I | TTAA | 3 cut(s) | 242, 1394, 1481 |
| Tru9I | TTAA | 3 cut(s) | 242, 1394, 1481 |
| TscAI | CASTG | 4 cut(s) | 38, 258, 471, 1024 |
| TseFI | GTSAC | 2 cut(s) | 253, 842 |
| TseI | GCWGC | 1 cut(s) | 668 |
| Tsp45I | GTSAC | 2 cut(s) | 253, 842 |
| TspDTI | ATGAA | 8 cut(s) | 166, 236, 353, 363, 1043, 1233, 1467, 1544 |
| TspRI | CASTG | 4 cut(s) | 38, 258, 471, 1024 |
| Tth111I | GACNNNGTC | 4 cut(s) | 262, 310, 346, 848 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 602 |
| VpaK11BI | GGWCC | 1 cut(s) | 28 |
| VspI | ATTAAT | 1 cut(s) | 1481 |
| XapI | RAATTY | 1 cut(s) | 1205 |
| XceI | RCATGY | 2 cut(s) | 464, 689 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 162, 1052 |
| XhoI | CTCGAG | 1 cut(s) | 47 |
| XmiI | GTMKAC | 1 cut(s) | 1343 |
| XspI | CTAG | 4 cut(s) | 291, 537, 1067, 1555 |
| Zsp2I | ATGCAT | 3 cut(s) | 482, 691, 1279 |