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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 798 |
| Acc16I | TGCGCA | 1 cut(s) | 678 |
| Acc36I | ACCTGC | 1 cut(s) | 1238 |
| AccB1I | GGYRCC | 1 cut(s) | 1069 |
| AccIII | TCCGGA | 1 cut(s) | 1114 |
| AciI | CCGC | 3 cut(s) | 732, 1199, 1204 |
| AclWI | GGATC | 4 cut(s) | 770, 1106, 1136, 1149 |
| AcoI | YGGCCR | 1 cut(s) | 127 |
| AcsI | RAATTY | 1 cut(s) | 154 |
| AcyI | GRCGYC | 1 cut(s) | 1156 |
| AfaI | GTAC | 2 cut(s) | 525, 914 |
| AflII | CTTAAG | 2 cut(s) | 164, 1436 |
| AflIII | ACRYGT | 2 cut(s) | 145, 526 |
| AgsI | TTSAA | 7 cut(s) | 38, 237, 266, 278, 435, 772, 1256 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 203, 235 |
| AluBI | AGCT | 6 cut(s) | 608, 618, 785, 834, 1361, 1408 |
| AluI | AGCT | 6 cut(s) | 608, 618, 785, 834, 1361, 1408 |
| Alw21I | GWGCWC | 2 cut(s) | 1410, 1425 |
| AlwI | GGATC | 4 cut(s) | 770, 1106, 1136, 1149 |
| Aor13HI | TCCGGA | 1 cut(s) | 1114 |
| AoxI | GGCC | 2 cut(s) | 127, 1464 |
| ApeKI | GCWGC | 3 cut(s) | 269, 542, 706 |
| ApoI | RAATTY | 1 cut(s) | 154 |
| AseI | ATTAAT | 1 cut(s) | 822 |
| AspLEI | GCGC | 1 cut(s) | 679 |
| AspS9I | GGNCC | 3 cut(s) | 479, 1014, 1201 |
| AsuHPI | GGTGA | 1 cut(s) | 995 |
| AvaII | GGWCC | 3 cut(s) | 479, 1014, 1201 |
| BalI | TGGCCA | 1 cut(s) | 129 |
| BamHI | GGATCC | 1 cut(s) | 1141 |
| BanI | GGYRCC | 1 cut(s) | 1069 |
| BanII | GRGCYC | 1 cut(s) | 1410 |
| BbsI | GAAGAC | 1 cut(s) | 236 |
| Bbv12I | GWGCWC | 2 cut(s) | 1410, 1425 |
| BbvI | GCAGC | 3 cut(s) | 281, 529, 718 |
| BccI | CCATC | 2 cut(s) | 320, 470 |
| BclI | TGATCA | 1 cut(s) | 379 |
| BfaI | CTAG | 4 cut(s) | 30, 947, 971, 1468 |
| BfmI | CTRYAG | 1 cut(s) | 1451 |
| BfrI | CTTAAG | 2 cut(s) | 164, 1436 |
| BfuAI | ACCTGC | 1 cut(s) | 1238 |
| BisI | GCNGC | 4 cut(s) | 270, 543, 707, 732 |
| BlsI | GCNGC | 4 cut(s) | 271, 544, 708, 733 |
| Bme18I | GGWCC | 3 cut(s) | 479, 1014, 1201 |
| BmgT120I | GGNCC | 3 cut(s) | 479, 1014, 1201 |
| BmiI | GGNNCC | 5 cut(s) | 68, 889, 1016, 1071, 1143 |
| BmsI | GCATC | 1 cut(s) | 1091 |
| BpiI | GAAGAC | 1 cut(s) | 236 |
| BpuEI | CTTGAG | 1 cut(s) | 1409 |
| Bsa29I | ATCGAT | 1 cut(s) | 1110 |
| BsaAI | YACGTR | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 1 cut(s) | 1156 |
| BsaJI | CCNNGG | 1 cut(s) | 1159 |
| BsaWI | WCCGGW | 2 cut(s) | 1114, 1144 |
| Bse1I | ACTGG | 1 cut(s) | 985 |
| Bse3DI | GCAATG | 2 cut(s) | 213, 734 |
| BseAI | TCCGGA | 1 cut(s) | 1114 |
| BseCI | ATCGAT | 1 cut(s) | 1110 |
| BseDI | CCNNGG | 1 cut(s) | 1159 |
| BseGI | GGATG | 3 cut(s) | 856, 998, 1431 |
| BseMI | GCAATG | 2 cut(s) | 213, 734 |
| BseMII | CTCAG | 1 cut(s) | 396 |
| BseNI | ACTGG | 1 cut(s) | 985 |
| BseXI | GCAGC | 3 cut(s) | 281, 529, 718 |
| BseYI | CCCAGC | 1 cut(s) | 618 |
| BshFI | GGCC | 2 cut(s) | 129, 1466 |
| BshNI | GGYRCC | 1 cut(s) | 1069 |
| BshVI | ATCGAT | 1 cut(s) | 1110 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1410, 1425 |
| BsiSI | CCGG | 2 cut(s) | 1115, 1145 |
| BslFI | GGGAC | 3 cut(s) | 514, 1000, 1322 |
| BsmFI | GGGAC | 3 cut(s) | 514, 1000, 1322 |
| BsmI | GAATGC | 1 cut(s) | 17 |
| BsnI | GGCC | 2 cut(s) | 129, 1466 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1410, 1425 |
| Bsp13I | TCCGGA | 1 cut(s) | 1114 |
| Bsp143I | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| BspACI | CCGC | 3 cut(s) | 732, 1199, 1204 |
| BspANI | GGCC | 2 cut(s) | 129, 1466 |
| BspCNI | CTCAG | 1 cut(s) | 397 |
| BspDI | ATCGAT | 1 cut(s) | 1110 |
| BspEI | TCCGGA | 1 cut(s) | 1114 |
| BspLI | GGNNCC | 5 cut(s) | 68, 889, 1016, 1071, 1143 |
| BspMAI | CTGCAG | 1 cut(s) | 1455 |
| BspMI | ACCTGC | 1 cut(s) | 1238 |
| BspPI | GGATC | 4 cut(s) | 770, 1106, 1136, 1149 |
| BspQI | GCTCTTC | 1 cut(s) | 798 |
| BspT107I | GGYRCC | 1 cut(s) | 1069 |
| BspTI | CTTAAG | 2 cut(s) | 164, 1436 |
| BsrDI | GCAATG | 2 cut(s) | 213, 734 |
| BsrI | ACTGG | 1 cut(s) | 985 |
| BssECI | CCNNGG | 1 cut(s) | 1159 |
| BssMI | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| BssNI | GRCGYC | 1 cut(s) | 1156 |
| BssT1I | CCWWGG | 1 cut(s) | 1159 |
| Bst4CI | ACNGT | 7 cut(s) | 42, 88, 598, 1105, 1129, 1189, 1278 |
| Bst6I | CTCTTC | 2 cut(s) | 687, 798 |
| BstACI | GRCGYC | 1 cut(s) | 1156 |
| BstAFI | CTTAAG | 2 cut(s) | 164, 1436 |
| BstBAI | YACGTR | 1 cut(s) | 527 |
| BstC8I | GCNNGC | 4 cut(s) | 606, 729, 864, 1410 |
| BstDEI | CTNAG | 2 cut(s) | 405, 828 |
| BstF5I | GGATG | 3 cut(s) | 856, 998, 1431 |
| BstHHI | GCGC | 1 cut(s) | 679 |
| BstKTI | GATC | 6 cut(s) | 382, 778, 1033, 1110, 1114, 1144 |
| BstMBI | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 872, 1405 |
| BstNSI | RCATGY | 2 cut(s) | 149, 812 |
| BstSFI | CTRYAG | 1 cut(s) | 1451 |
| BstV1I | GCAGC | 3 cut(s) | 281, 529, 718 |
| BstV2I | GAAGAC | 1 cut(s) | 236 |
| BstX2I | RGATCY | 2 cut(s) | 775, 1141 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 125 |
| BstYI | RGATCY | 2 cut(s) | 775, 1141 |
| Bsu15I | ATCGAT | 1 cut(s) | 1110 |
| BsuRI | GGCC | 2 cut(s) | 129, 1466 |
| BsuTUI | ATCGAT | 1 cut(s) | 1110 |
| BtsCI | GGATG | 3 cut(s) | 856, 998, 1431 |
| BtsIMutI | CAGTG | 3 cut(s) | 84, 1125, 1283 |
| BveI | ACCTGC | 1 cut(s) | 1238 |
| Cac8I | GCNNGC | 4 cut(s) | 606, 729, 864, 1410 |
| CfoI | GCGC | 1 cut(s) | 679 |
| Cfr13I | GGNCC | 3 cut(s) | 479, 1014, 1201 |
| ClaI | ATCGAT | 1 cut(s) | 1110 |
| CpoI | CGGWCCG | 1 cut(s) | 1201 |
| CseI | GACGC | 1 cut(s) | 1164 |
| Csp6I | GTAC | 2 cut(s) | 524, 913 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 619, 654, 1261, 1296 |
| CspI | CGGWCCG | 1 cut(s) | 1201 |
| CviQI | GTAC | 2 cut(s) | 524, 913 |
| DdeI | CTNAG | 2 cut(s) | 405, 828 |
| DpnI | GATC | 6 cut(s) | 381, 777, 1032, 1109, 1113, 1143 |
| DpnII | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| EaeI | YGGCCR | 1 cut(s) | 127 |
| Eam1104I | CTCTTC | 2 cut(s) | 687, 798 |
| EarI | CTCTTC | 2 cut(s) | 687, 798 |
| Ecl136II | GAGCTC | 1 cut(s) | 1408 |
| Eco130I | CCWWGG | 1 cut(s) | 1159 |
| Eco24I | GRGCYC | 1 cut(s) | 1410 |
| Eco47I | GGWCC | 3 cut(s) | 479, 1014, 1201 |
| Eco53kI | GAGCTC | 1 cut(s) | 1408 |
| EcoICRI | GAGCTC | 1 cut(s) | 1408 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1014 |
| EcoT14I | CCWWGG | 1 cut(s) | 1159 |
| EcoT22I | ATGCAT | 1 cut(s) | 1084 |
| EcoT38I | GRGCYC | 1 cut(s) | 1410 |
| ErhI | CCWWGG | 1 cut(s) | 1159 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 899, 931 |
| FaqI | GGGAC | 3 cut(s) | 514, 1000, 1322 |
| FbaI | TGATCA | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 4 cut(s) | 270, 543, 707, 732 |
| FokI | GGATG | 3 cut(s) | 863, 1005, 1418 |
| FriOI | GRGCYC | 1 cut(s) | 1410 |
| Fsp4HI | GCNGC | 4 cut(s) | 270, 543, 707, 732 |
| FspBI | CTAG | 4 cut(s) | 30, 947, 971, 1468 |
| FspI | TGCGCA | 1 cut(s) | 678 |
| GlaI | GCGC | 1 cut(s) | 678 |
| GluI | GCNGC | 4 cut(s) | 270, 543, 707, 732 |
| GsaI | CCCAGC | 1 cut(s) | 622 |
| HaeIII | GGCC | 2 cut(s) | 129, 1466 |
| HapII | CCGG | 2 cut(s) | 1115, 1145 |
| HgaI | GACGC | 1 cut(s) | 1164 |
| HhaI | GCGC | 1 cut(s) | 679 |
| Hin1I | GRCGYC | 1 cut(s) | 1156 |
| Hin6I | GCGC | 1 cut(s) | 677 |
| HinP1I | GCGC | 1 cut(s) | 677 |
| HincII | GTYRAC | 2 cut(s) | 967, 1192 |
| HindII | GTYRAC | 2 cut(s) | 967, 1192 |
| HinfI | GANTC | 8 cut(s) | 310, 356, 502, 565, 667, 716, 768, 935 |
| HpaII | CCGG | 2 cut(s) | 1115, 1145 |
| HphI | GGTGA | 1 cut(s) | 995 |
| Hpy166II | GTNNAC | 3 cut(s) | 143, 967, 1192 |
| Hpy188I | TCNGA | 2 cut(s) | 780, 1059 |
| Hpy188III | TCNNGA | 4 cut(s) | 244, 1017, 1115, 1426 |
| Hpy8I | GTNNAC | 3 cut(s) | 143, 967, 1192 |
| HpyAV | CCTTC | 1 cut(s) | 758 |
| HpyCH4III | ACNGT | 7 cut(s) | 42, 88, 598, 1105, 1129, 1189, 1278 |
| HpyCH4IV | ACGT | 1 cut(s) | 526 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 872, 1405 |
| HpyF3I | CTNAG | 2 cut(s) | 405, 828 |
| HpySE526I | ACGT | 1 cut(s) | 526 |
| Hsp92I | GRCGYC | 1 cut(s) | 1156 |
| HspAI | GCGC | 1 cut(s) | 677 |
| Kpn2I | TCCGGA | 1 cut(s) | 1114 |
| Ksp22I | TGATCA | 1 cut(s) | 379 |
| Kzo9I | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| LguI | GCTCTTC | 1 cut(s) | 798 |
| LmnI | GCTCC | 2 cut(s) | 66, 615 |
| Lsp1109I | GCAGC | 3 cut(s) | 281, 529, 718 |
| LweI | GCATC | 1 cut(s) | 1091 |
| MaeI | CTAG | 4 cut(s) | 30, 947, 971, 1468 |
| MaeII | ACGT | 1 cut(s) | 526 |
| MaeIII | GTNAC | 1 cut(s) | 880 |
| MalI | GATC | 6 cut(s) | 381, 777, 1032, 1109, 1113, 1143 |
| MboI | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| MfeI | CAATTG | 1 cut(s) | 273 |
| MflI | RGATCY | 2 cut(s) | 775, 1141 |
| MhlI | GDGCHC | 2 cut(s) | 1410, 1425 |
| MlsI | TGGCCA | 1 cut(s) | 129 |
| MluCI | AATT | 4 cut(s) | 78, 154, 273, 1386 |
| MluNI | TGGCCA | 1 cut(s) | 129 |
| MlyI | GAGTC | 2 cut(s) | 496, 944 |
| MmeI | TCCRAC | 2 cut(s) | 24, 70 |
| MnlI | CCTC | 8 cut(s) | 67, 340, 544, 903, 1005, 1214, 1239, 1299 |
| Mox20I | TGGCCA | 1 cut(s) | 129 |
| Mph1103I | ATGCAT | 1 cut(s) | 1084 |
| MroI | TCCGGA | 1 cut(s) | 1114 |
| MscI | TGGCCA | 1 cut(s) | 129 |
| MseI | TTAA | 5 cut(s) | 165, 258, 822, 855, 1437 |
| MslI | CAYNNNNRTG | 1 cut(s) | 324 |
| Msp20I | TGGCCA | 1 cut(s) | 129 |
| MspA1I | CMGCKG | 1 cut(s) | 1199 |
| MspCI | CTTAAG | 2 cut(s) | 164, 1436 |
| MspI | CCGG | 2 cut(s) | 1115, 1145 |
| MunI | CAATTG | 1 cut(s) | 273 |
| Mva1269I | GAATGC | 1 cut(s) | 17 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 872, 1405 |
| NdeII | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 889, 1016, 1071, 1143 |
| NmeAIII | GCCGAG | 1 cut(s) | 328 |
| NsbI | TGCGCA | 1 cut(s) | 678 |
| NsiI | ATGCAT | 1 cut(s) | 1084 |
| NspI | RCATGY | 2 cut(s) | 149, 812 |
| PciI | ACATGT | 1 cut(s) | 145 |
| PciSI | GCTCTTC | 1 cut(s) | 798 |
| PctI | GAATGC | 1 cut(s) | 17 |
| PfeI | GAWTC | 6 cut(s) | 310, 356, 565, 667, 716, 768 |
| PflFI | GACNNNGTC | 1 cut(s) | 1127 |
| PkrI | GCNGC | 4 cut(s) | 271, 544, 708, 733 |
| PleI | GAGTC | 2 cut(s) | 496, 943 |
| PpsI | GAGTC | 2 cut(s) | 496, 943 |
| Ppu21I | YACGTR | 1 cut(s) | 527 |
| PpuMI | RGGWCCY | 1 cut(s) | 1014 |
| PscI | ACATGT | 1 cut(s) | 145 |
| PshBI | ATTAAT | 1 cut(s) | 822 |
| PsiI | TTATAA | 1 cut(s) | 798 |
| Psp124BI | GAGCTC | 1 cut(s) | 1410 |
| Psp5II | RGGWCCY | 1 cut(s) | 1014 |
| PspFI | CCCAGC | 1 cut(s) | 618 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 889, 1016, 1071, 1143 |
| PspPI | GGNCC | 3 cut(s) | 479, 1014, 1201 |
| PspPPI | RGGWCCY | 1 cut(s) | 1014 |
| PstI | CTGCAG | 1 cut(s) | 1455 |
| PsuI | RGATCY | 2 cut(s) | 775, 1141 |
| PsyI | GACNNNGTC | 1 cut(s) | 1127 |
| RsaI | GTAC | 2 cut(s) | 525, 914 |
| RsaNI | GTAC | 2 cut(s) | 524, 913 |
| RseI | CAYNNNNRTG | 1 cut(s) | 324 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1201 |
| RsrII | CGGWCCG | 1 cut(s) | 1201 |
| SacI | GAGCTC | 1 cut(s) | 1410 |
| SapI | GCTCTTC | 1 cut(s) | 798 |
| SaqAI | TTAA | 5 cut(s) | 165, 258, 822, 855, 1437 |
| SatI | GCNGC | 4 cut(s) | 270, 543, 707, 732 |
| Sau3AI | GATC | 6 cut(s) | 379, 775, 1030, 1107, 1111, 1141 |
| Sau96I | GGNCC | 3 cut(s) | 479, 1014, 1201 |
| SchI | GAGTC | 2 cut(s) | 496, 944 |
| SduI | GDGCHC | 2 cut(s) | 1410, 1425 |
| SfaNI | GCATC | 1 cut(s) | 1091 |
| SfcI | CTRYAG | 1 cut(s) | 1451 |
| SinI | GGWCC | 3 cut(s) | 479, 1014, 1201 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 324 |
| SmlI | CTYRAG | 3 cut(s) | 164, 1424, 1436 |
| SmoI | CTYRAG | 3 cut(s) | 164, 1424, 1436 |
| Sse9I | AATT | 4 cut(s) | 78, 154, 273, 1386 |
| SsiI | CCGC | 3 cut(s) | 732, 1199, 1204 |
| SspMI | CTAG | 4 cut(s) | 30, 947, 971, 1468 |
| SstI | GAGCTC | 1 cut(s) | 1410 |
| StyI | CCWWGG | 1 cut(s) | 1159 |
| TaaI | ACNGT | 7 cut(s) | 42, 88, 598, 1105, 1129, 1189, 1278 |
| TaiI | ACGT | 1 cut(s) | 529 |
| TaqI | TCGA | 3 cut(s) | 699, 714, 1110 |
| TasI | AATT | 4 cut(s) | 78, 154, 273, 1386 |
| TauI | GCSGC | 1 cut(s) | 734 |
| TfiI | GAWTC | 6 cut(s) | 310, 356, 565, 667, 716, 768 |
| Tru1I | TTAA | 5 cut(s) | 165, 258, 822, 855, 1437 |
| Tru9I | TTAA | 5 cut(s) | 165, 258, 822, 855, 1437 |
| TscAI | CASTG | 3 cut(s) | 91, 1132, 1283 |
| TseI | GCWGC | 3 cut(s) | 269, 542, 706 |
| TspDTI | ATGAA | 6 cut(s) | 147, 224, 306, 1040, 1126, 1407 |
| TspRI | CASTG | 3 cut(s) | 91, 1132, 1283 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1127 |
| Vha464I | CTTAAG | 2 cut(s) | 164, 1436 |
| VpaK11BI | GGWCC | 3 cut(s) | 479, 1014, 1201 |
| VspI | ATTAAT | 1 cut(s) | 822 |
| XapI | RAATTY | 1 cut(s) | 154 |
| XceI | RCATGY | 2 cut(s) | 149, 812 |
| XspI | CTAG | 4 cut(s) | 30, 947, 971, 1468 |
| Zsp2I | ATGCAT | 1 cut(s) | 1084 |