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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 441 |
| AccIII | TCCGGA | 1 cut(s) | 1029 |
| AciI | CCGC | 1 cut(s) | 909 |
| AclWI | GGATC | 6 cut(s) | 110, 713, 746, 759, 944, 957 |
| AcuI | CTGAAG | 2 cut(s) | 480, 632 |
| AfaI | GTAC | 1 cut(s) | 527 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 234, 1063 |
| AgsI | TTSAA | 1 cut(s) | 544 |
| AjnI | CCWGG | 2 cut(s) | 691, 1062 |
| AluBI | AGCT | 6 cut(s) | 8, 91, 180, 500, 617, 641 |
| AluI | AGCT | 6 cut(s) | 8, 91, 180, 500, 617, 641 |
| AlwI | GGATC | 6 cut(s) | 110, 713, 746, 759, 944, 957 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 400 |
| Aor13HI | TCCGGA | 1 cut(s) | 1029 |
| AoxI | GGCC | 3 cut(s) | 694, 786, 844 |
| ApeKI | GCWGC | 3 cut(s) | 180, 561, 638 |
| AseI | ATTAAT | 1 cut(s) | 101 |
| AspLEI | GCGC | 2 cut(s) | 927, 1000 |
| AsuHPI | GGTGA | 3 cut(s) | 203, 674, 1052 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 435, 468 |
| BamHI | GGATCC | 2 cut(s) | 751, 949 |
| BbsI | GAAGAC | 1 cut(s) | 659 |
| BbvI | GCAGC | 3 cut(s) | 167, 573, 650 |
| BccI | CCATC | 2 cut(s) | 28, 653 |
| BceAI | ACGGC | 2 cut(s) | 681, 831 |
| BciT130I | CCWGG | 2 cut(s) | 693, 1064 |
| BfaI | CTAG | 2 cut(s) | 42, 434 |
| BfmI | CTRYAG | 1 cut(s) | 588 |
| BfoI | RGCGCY | 1 cut(s) | 1001 |
| BglII | AGATCT | 1 cut(s) | 200 |
| BisI | GCNGC | 3 cut(s) | 181, 562, 639 |
| BlsI | GCNGC | 3 cut(s) | 182, 563, 640 |
| Bme1390I | CCNGG | 2 cut(s) | 693, 1064 |
| BmiI | GGNNCC | 2 cut(s) | 753, 951 |
| BmrFI | CCNGG | 2 cut(s) | 693, 1064 |
| BmsI | GCATC | 2 cut(s) | 669, 912 |
| BpiI | GAAGAC | 1 cut(s) | 659 |
| BpmI | CTGGAG | 1 cut(s) | 207 |
| Bpu10I | CCTNAGC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 2 cut(s) | 957, 981 |
| BsaWI | WCCGGW | 1 cut(s) | 1029 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 180, 210, 489, 519 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 234, 1063 |
| BseAI | TCCGGA | 1 cut(s) | 1029 |
| BseBI | CCWGG | 2 cut(s) | 693, 1064 |
| BseDI | CCNNGG | 2 cut(s) | 957, 981 |
| BseGI | GGATG | 2 cut(s) | 39, 223 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 234, 1063 |
| BseMII | CTCAG | 2 cut(s) | 57, 74 |
| BseXI | GCAGC | 3 cut(s) | 167, 573, 650 |
| BseYI | CCCAGC | 1 cut(s) | 893 |
| BsgI | GTGCAG | 2 cut(s) | 386, 580 |
| Bsh1236I | CGCG | 1 cut(s) | 441 |
| BshFI | GGCC | 3 cut(s) | 696, 788, 846 |
| BsiSI | CCGG | 1 cut(s) | 1030 |
| BslFI | GGGAC | 2 cut(s) | 135, 950 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 234, 1063 |
| BsmFI | GGGAC | 2 cut(s) | 135, 950 |
| BsmI | GAATGC | 1 cut(s) | 911 |
| BsnI | GGCC | 3 cut(s) | 696, 788, 846 |
| Bsp13I | TCCGGA | 1 cut(s) | 1029 |
| Bsp143I | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| BspACI | CCGC | 1 cut(s) | 909 |
| BspANI | GGCC | 3 cut(s) | 696, 788, 846 |
| BspCNI | CTCAG | 2 cut(s) | 58, 75 |
| BspEI | TCCGGA | 1 cut(s) | 1029 |
| BspFNI | CGCG | 1 cut(s) | 441 |
| BspHI | TCATGA | 2 cut(s) | 675, 930 |
| BspLI | GGNNCC | 2 cut(s) | 753, 951 |
| BspPI | GGATC | 6 cut(s) | 110, 713, 746, 759, 944, 957 |
| BssECI | CCNNGG | 2 cut(s) | 957, 981 |
| BssMI | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| BssT1I | CCWWGG | 2 cut(s) | 957, 981 |
| Bst2UI | CCWGG | 2 cut(s) | 693, 1064 |
| Bst4CI | ACNGT | 4 cut(s) | 505, 592, 739, 806 |
| Bst6I | CTCTTC | 5 cut(s) | 15, 273, 300, 327, 777 |
| BstC8I | GCNNGC | 3 cut(s) | 125, 178, 481 |
| BstDEI | CTNAG | 3 cut(s) | 9, 66, 83 |
| BstF5I | GGATG | 2 cut(s) | 39, 223 |
| BstFNI | CGCG | 1 cut(s) | 441 |
| BstH2I | RGCGCY | 1 cut(s) | 1001 |
| BstHHI | GCGC | 2 cut(s) | 927, 1000 |
| BstKTI | GATC | 8 cut(s) | 118, 203, 538, 626, 708, 754, 842, 952 |
| BstMBI | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 570 |
| BstNI | CCWGG | 2 cut(s) | 693, 1064 |
| BstNSI | RCATGY | 1 cut(s) | 127 |
| BstSCI | CCNGG | 2 cut(s) | 691, 1062 |
| BstSFI | CTRYAG | 1 cut(s) | 588 |
| BstUI | CGCG | 1 cut(s) | 441 |
| BstV1I | GCAGC | 3 cut(s) | 167, 573, 650 |
| BstV2I | GAAGAC | 1 cut(s) | 659 |
| BstX2I | RGATCY | 4 cut(s) | 200, 705, 751, 949 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 55 |
| BstYI | RGATCY | 4 cut(s) | 200, 705, 751, 949 |
| BsuRI | GGCC | 3 cut(s) | 696, 788, 846 |
| BtsCI | GGATG | 2 cut(s) | 39, 223 |
| BtsI | GCAGTG | 1 cut(s) | 904 |
| BtsIMutI | CAGTG | 2 cut(s) | 811, 904 |
| Cac8I | GCNNGC | 3 cut(s) | 125, 178, 481 |
| CaiI | CAGNNNCTG | 1 cut(s) | 400 |
| CciI | TCATGA | 2 cut(s) | 675, 930 |
| CfoI | GCGC | 2 cut(s) | 927, 1000 |
| Csp6I | GTAC | 1 cut(s) | 526 |
| CviAII | CATG | 8 cut(s) | 124, 386, 484, 533, 565, 676, 931, 946 |
| CviQI | GTAC | 1 cut(s) | 526 |
| DdeI | CTNAG | 3 cut(s) | 9, 66, 83 |
| DpnI | GATC | 8 cut(s) | 117, 202, 537, 625, 707, 753, 841, 951 |
| DpnII | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| Eam1104I | CTCTTC | 5 cut(s) | 15, 273, 300, 327, 777 |
| EarI | CTCTTC | 5 cut(s) | 15, 273, 300, 327, 777 |
| Eco130I | CCWWGG | 2 cut(s) | 957, 981 |
| Eco57I | CTGAAG | 2 cut(s) | 480, 632 |
| EcoRII | CCWGG | 2 cut(s) | 691, 1062 |
| EcoT14I | CCWWGG | 2 cut(s) | 957, 981 |
| ErhI | CCWWGG | 2 cut(s) | 957, 981 |
| FaeI | CATG | 8 cut(s) | 127, 389, 487, 536, 568, 679, 934, 949 |
| FaqI | GGGAC | 2 cut(s) | 135, 950 |
| FatI | CATG | 8 cut(s) | 123, 385, 483, 532, 564, 675, 930, 945 |
| FauI | CCCGC | 1 cut(s) | 902 |
| Fnu4HI | GCNGC | 3 cut(s) | 181, 562, 639 |
| FokI | GGATG | 2 cut(s) | 46, 230 |
| Fsp4HI | GCNGC | 3 cut(s) | 181, 562, 639 |
| FspBI | CTAG | 2 cut(s) | 42, 434 |
| GlaI | GCGC | 2 cut(s) | 926, 999 |
| GluI | GCNGC | 3 cut(s) | 181, 562, 639 |
| GsaI | CCCAGC | 1 cut(s) | 897 |
| GsuI | CTGGAG | 1 cut(s) | 207 |
| HaeII | RGCGCY | 1 cut(s) | 1001 |
| HaeIII | GGCC | 3 cut(s) | 696, 788, 846 |
| HapII | CCGG | 1 cut(s) | 1030 |
| HhaI | GCGC | 2 cut(s) | 927, 1000 |
| Hin1II | CATG | 8 cut(s) | 127, 389, 487, 536, 568, 679, 934, 949 |
| Hin6I | GCGC | 2 cut(s) | 925, 998 |
| HinP1I | GCGC | 2 cut(s) | 925, 998 |
| HinfI | GANTC | 1 cut(s) | 85 |
| HpaII | CCGG | 1 cut(s) | 1030 |
| HphI | GGTGA | 3 cut(s) | 203, 674, 1052 |
| Hpy166II | GTNNAC | 2 cut(s) | 665, 802 |
| Hpy188I | TCNGA | 2 cut(s) | 169, 651 |
| Hpy8I | GTNNAC | 2 cut(s) | 665, 802 |
| HpyAV | CCTTC | 5 cut(s) | 257, 304, 457, 963, 1067 |
| HpyCH4III | ACNGT | 4 cut(s) | 505, 592, 739, 806 |
| HpyCH4V | TGCA | 3 cut(s) | 403, 479, 561 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 570 |
| HpyF3I | CTNAG | 3 cut(s) | 9, 66, 83 |
| Hsp92II | CATG | 8 cut(s) | 127, 389, 487, 536, 568, 679, 934, 949 |
| HspAI | GCGC | 2 cut(s) | 925, 998 |
| Kpn2I | TCCGGA | 1 cut(s) | 1029 |
| Kzo9I | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| LmnI | GCTCC | 2 cut(s) | 73, 497 |
| Lsp1109I | GCAGC | 3 cut(s) | 167, 573, 650 |
| LweI | GCATC | 2 cut(s) | 669, 912 |
| MaeI | CTAG | 2 cut(s) | 42, 434 |
| MalI | GATC | 8 cut(s) | 117, 202, 537, 625, 707, 753, 841, 951 |
| MboI | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| MfeI | CAATTG | 3 cut(s) | 53, 411, 1017 |
| MflI | RGATCY | 4 cut(s) | 200, 705, 751, 949 |
| MluCI | AATT | 9 cut(s) | 53, 98, 102, 109, 138, 411, 473, 823, 1017 |
| MlyI | GAGTC | 1 cut(s) | 94 |
| MroI | TCCGGA | 1 cut(s) | 1029 |
| MseI | TTAA | 3 cut(s) | 29, 101, 129 |
| MslI | CAYNNNNRTG | 1 cut(s) | 944 |
| MspI | CCGG | 1 cut(s) | 1030 |
| MspR9I | CCNGG | 2 cut(s) | 693, 1064 |
| MunI | CAATTG | 3 cut(s) | 53, 411, 1017 |
| Mva1269I | GAATGC | 1 cut(s) | 911 |
| MvaI | CCWGG | 2 cut(s) | 693, 1064 |
| MvnI | CGCG | 1 cut(s) | 441 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 570 |
| NdeII | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| NlaIII | CATG | 8 cut(s) | 127, 389, 487, 536, 568, 679, 934, 949 |
| NlaIV | GGNNCC | 2 cut(s) | 753, 951 |
| NspI | RCATGY | 1 cut(s) | 127 |
| PaeI | GCATGC | 1 cut(s) | 127 |
| PagI | TCATGA | 2 cut(s) | 675, 930 |
| PctI | GAATGC | 1 cut(s) | 911 |
| PkrI | GCNGC | 3 cut(s) | 182, 563, 640 |
| PleI | GAGTC | 1 cut(s) | 93 |
| PpsI | GAGTC | 1 cut(s) | 93 |
| PshBI | ATTAAT | 1 cut(s) | 101 |
| Psp6I | CCWGG | 2 cut(s) | 691, 1062 |
| PspFI | CCCAGC | 1 cut(s) | 893 |
| PspGI | CCWGG | 2 cut(s) | 691, 1062 |
| PspN4I | GGNNCC | 2 cut(s) | 753, 951 |
| PstNI | CAGNNNCTG | 1 cut(s) | 400 |
| PsuI | RGATCY | 4 cut(s) | 200, 705, 751, 949 |
| RsaI | GTAC | 1 cut(s) | 527 |
| RsaNI | GTAC | 1 cut(s) | 526 |
| RseI | CAYNNNNRTG | 1 cut(s) | 944 |
| SaqAI | TTAA | 3 cut(s) | 29, 101, 129 |
| SatI | GCNGC | 3 cut(s) | 181, 562, 639 |
| Sau3AI | GATC | 8 cut(s) | 115, 200, 535, 623, 705, 751, 839, 949 |
| SchI | GAGTC | 1 cut(s) | 94 |
| ScrFI | CCNGG | 2 cut(s) | 693, 1064 |
| SfaNI | GCATC | 2 cut(s) | 669, 912 |
| SfcI | CTRYAG | 1 cut(s) | 588 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 944 |
| SphI | GCATGC | 1 cut(s) | 127 |
| Sse9I | AATT | 9 cut(s) | 53, 98, 102, 109, 138, 411, 473, 823, 1017 |
| SsiI | CCGC | 1 cut(s) | 909 |
| SspMI | CTAG | 2 cut(s) | 42, 434 |
| StyD4I | CCNGG | 2 cut(s) | 691, 1062 |
| StyI | CCWWGG | 2 cut(s) | 957, 981 |
| TaaI | ACNGT | 4 cut(s) | 505, 592, 739, 806 |
| TaqI | TCGA | 4 cut(s) | 579, 643, 777, 903 |
| TasI | AATT | 9 cut(s) | 53, 98, 102, 109, 138, 411, 473, 823, 1017 |
| Tru1I | TTAA | 3 cut(s) | 29, 101, 129 |
| Tru9I | TTAA | 3 cut(s) | 29, 101, 129 |
| TscAI | CASTG | 2 cut(s) | 811, 904 |
| TseI | GCWGC | 3 cut(s) | 180, 561, 638 |
| TspRI | CASTG | 2 cut(s) | 811, 904 |
| VspI | ATTAAT | 1 cut(s) | 101 |
| XbaI | TCTAGA | 1 cut(s) | 433 |
| XceI | RCATGY | 1 cut(s) | 127 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 699 |
| XspI | CTAG | 2 cut(s) | 42, 434 |