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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 48 |
| AccB1I | GGYRCC | 1 cut(s) | 607 |
| AccII | CGCG | 3 cut(s) | 398, 682, 713 |
| AciI | CCGC | 5 cut(s) | 396, 713, 835, 838, 928 |
| AclWI | GGATC | 3 cut(s) | 326, 339, 802 |
| AcoI | YGGCCR | 4 cut(s) | 803, 826, 846, 967 |
| AcsI | RAATTY | 1 cut(s) | 587 |
| AcuI | CTGAAG | 1 cut(s) | 985 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 136, 801, 883 |
| AgsI | TTSAA | 5 cut(s) | 155, 293, 446, 587, 631 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 228 |
| AluBI | AGCT | 2 cut(s) | 257, 623 |
| AluI | AGCT | 2 cut(s) | 257, 623 |
| Alw26I | GTCTC | 3 cut(s) | 846, 895, 907 |
| AlwI | GGATC | 3 cut(s) | 326, 339, 802 |
| Ama87I | CYCGRG | 1 cut(s) | 74 |
| AoxI | GGCC | 5 cut(s) | 482, 803, 826, 846, 967 |
| ApeKI | GCWGC | 2 cut(s) | 933, 946 |
| ApoI | RAATTY | 1 cut(s) | 587 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 778 |
| AspLEI | GCGC | 3 cut(s) | 400, 682, 933 |
| AspS9I | GGNCC | 1 cut(s) | 962 |
| AsuC2I | CCSGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| AvaI | CYCGRG | 1 cut(s) | 74 |
| AvaII | GGWCC | 1 cut(s) | 962 |
| BamHI | GGATCC | 1 cut(s) | 331 |
| BanI | GGYRCC | 1 cut(s) | 607 |
| BbvCI | CCTCAGC | 1 cut(s) | 258 |
| BbvI | GCAGC | 2 cut(s) | 920, 958 |
| BccI | CCATC | 4 cut(s) | 23, 362, 395, 619 |
| BceAI | ACGGC | 2 cut(s) | 833, 941 |
| BcnI | CCSGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| BcoDI | GTCTC | 3 cut(s) | 846, 895, 907 |
| BfaI | CTAG | 2 cut(s) | 362, 494 |
| BfmI | CTRYAG | 1 cut(s) | 507 |
| BfoI | RGCGCY | 1 cut(s) | 934 |
| BfuAI | ACCTGC | 1 cut(s) | 48 |
| BisI | GCNGC | 5 cut(s) | 396, 836, 929, 934, 947 |
| BlsI | GCNGC | 5 cut(s) | 397, 837, 930, 935, 948 |
| Bme1390I | CCNGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| Bme18I | GGWCC | 1 cut(s) | 962 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 228 |
| BmeT110I | CYCGRG | 1 cut(s) | 74 |
| BmgT120I | GGNCC | 1 cut(s) | 962 |
| BmiI | GGNNCC | 4 cut(s) | 186, 333, 609, 964 |
| BmrFI | CCNGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| BmsI | GCATC | 1 cut(s) | 216 |
| Bpu10I | CCTNAGC | 1 cut(s) | 258 |
| BpuEI | CTTGAG | 2 cut(s) | 131, 422 |
| BpuMI | CCSGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| BsaBI | GATNNNNATC | 1 cut(s) | 176 |
| BsaI | GGTCTC | 2 cut(s) | 846, 907 |
| BsaJI | CCNNGG | 3 cut(s) | 74, 525, 923 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 136, 801, 883 |
| Bse8I | GATNNNNATC | 1 cut(s) | 176 |
| BseDI | CCNNGG | 3 cut(s) | 74, 525, 923 |
| BseGI | GGATG | 1 cut(s) | 373 |
| BseJI | GATNNNNATC | 1 cut(s) | 176 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 136, 801, 883 |
| BseMII | CTCAG | 1 cut(s) | 249 |
| BseRI | GAGGAG | 4 cut(s) | 149, 212, 419, 866 |
| BseX3I | CGGCCG | 3 cut(s) | 803, 846, 967 |
| BseXI | GCAGC | 2 cut(s) | 920, 958 |
| BsgI | GTGCAG | 1 cut(s) | 965 |
| Bsh1236I | CGCG | 3 cut(s) | 398, 682, 713 |
| Bsh1285I | CGRYCG | 3 cut(s) | 806, 849, 970 |
| BshFI | GGCC | 5 cut(s) | 484, 805, 828, 848, 969 |
| BshNI | GGYRCC | 1 cut(s) | 607 |
| BsiEI | CGRYCG | 3 cut(s) | 806, 849, 970 |
| BsiHKCI | CYCGRG | 1 cut(s) | 74 |
| BsiSI | CCGG | 9 cut(s) | 75, 188, 802, 816, 825, 845, 966, 970, 985 |
| BslFI | GGGAC | 2 cut(s) | 49, 57 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 136, 801, 883 |
| BsmAI | GTCTC | 3 cut(s) | 846, 895, 907 |
| BsmFI | GGGAC | 2 cut(s) | 49, 57 |
| BsnI | GGCC | 5 cut(s) | 484, 805, 828, 848, 969 |
| Bso31I | GGTCTC | 2 cut(s) | 846, 907 |
| BsoBI | CYCGRG | 1 cut(s) | 74 |
| Bsp143I | GATC | 2 cut(s) | 331, 807 |
| BspACI | CCGC | 5 cut(s) | 396, 713, 835, 838, 928 |
| BspANI | GGCC | 5 cut(s) | 484, 805, 828, 848, 969 |
| BspCNI | CTCAG | 1 cut(s) | 250 |
| BspFNI | CGCG | 3 cut(s) | 398, 682, 713 |
| BspLI | GGNNCC | 4 cut(s) | 186, 333, 609, 964 |
| BspMI | ACCTGC | 1 cut(s) | 48 |
| BspPI | GGATC | 3 cut(s) | 326, 339, 802 |
| BspT107I | GGYRCC | 1 cut(s) | 607 |
| BspTNI | GGTCTC | 2 cut(s) | 846, 907 |
| BssECI | CCNNGG | 3 cut(s) | 74, 525, 923 |
| BssMI | GATC | 2 cut(s) | 331, 807 |
| BssT1I | CCWWGG | 1 cut(s) | 525 |
| Bst4CI | ACNGT | 4 cut(s) | 131, 316, 451, 511 |
| Bst6I | CTCTTC | 1 cut(s) | 564 |
| BstC8I | GCNNGC | 3 cut(s) | 459, 621, 863 |
| BstDEI | CTNAG | 1 cut(s) | 258 |
| BstDSI | CCRYGG | 1 cut(s) | 923 |
| BstF5I | GGATG | 1 cut(s) | 373 |
| BstFNI | CGCG | 3 cut(s) | 398, 682, 713 |
| BstH2I | RGCGCY | 1 cut(s) | 934 |
| BstHHI | GCGC | 3 cut(s) | 400, 682, 933 |
| BstKTI | GATC | 2 cut(s) | 334, 810 |
| BstMAI | GTCTC | 3 cut(s) | 846, 895, 907 |
| BstMBI | GATC | 2 cut(s) | 331, 807 |
| BstMCI | CGRYCG | 3 cut(s) | 806, 849, 970 |
| BstSCI | CCNGG | 5 cut(s) | 73, 74, 800, 814, 964 |
| BstSFI | CTRYAG | 1 cut(s) | 507 |
| BstUI | CGCG | 3 cut(s) | 398, 682, 713 |
| BstV1I | GCAGC | 2 cut(s) | 920, 958 |
| BstX2I | RGATCY | 1 cut(s) | 331 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 319 |
| BstYI | RGATCY | 1 cut(s) | 331 |
| BstZI | CGGCCG | 3 cut(s) | 803, 846, 967 |
| BsuRI | GGCC | 5 cut(s) | 484, 805, 828, 848, 969 |
| BtgI | CCRYGG | 1 cut(s) | 923 |
| BtsCI | GGATG | 1 cut(s) | 373 |
| BtsIMutI | CAGTG | 2 cut(s) | 312, 456 |
| BveI | ACCTGC | 1 cut(s) | 48 |
| Cac8I | GCNNGC | 3 cut(s) | 459, 621, 863 |
| CfoI | GCGC | 3 cut(s) | 400, 682, 933 |
| Cfr13I | GGNCC | 1 cut(s) | 962 |
| Cfr9I | CCCGGG | 1 cut(s) | 74 |
| CseI | GACGC | 2 cut(s) | 218, 671 |
| CviAII | CATG | 4 cut(s) | 19, 350, 480, 995 |
| DdeI | CTNAG | 1 cut(s) | 258 |
| DpnI | GATC | 2 cut(s) | 333, 809 |
| DpnII | GATC | 2 cut(s) | 331, 807 |
| DriI | GACNNNNNGTC | 1 cut(s) | 228 |
| EaeI | YGGCCR | 4 cut(s) | 803, 826, 846, 967 |
| EagI | CGGCCG | 3 cut(s) | 803, 846, 967 |
| Eam1104I | CTCTTC | 1 cut(s) | 564 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 228 |
| EarI | CTCTTC | 1 cut(s) | 564 |
| EclXI | CGGCCG | 3 cut(s) | 803, 846, 967 |
| Eco130I | CCWWGG | 1 cut(s) | 525 |
| Eco31I | GGTCTC | 2 cut(s) | 846, 907 |
| Eco32I | GATATC | 1 cut(s) | 178 |
| Eco47I | GGWCC | 1 cut(s) | 962 |
| Eco52I | CGGCCG | 3 cut(s) | 803, 846, 967 |
| Eco57I | CTGAAG | 1 cut(s) | 985 |
| Eco88I | CYCGRG | 1 cut(s) | 74 |
| EcoRV | GATATC | 1 cut(s) | 178 |
| EcoT14I | CCWWGG | 1 cut(s) | 525 |
| ErhI | CCWWGG | 1 cut(s) | 525 |
| FaeI | CATG | 4 cut(s) | 22, 353, 483, 998 |
| FaqI | GGGAC | 2 cut(s) | 49, 57 |
| FatI | CATG | 4 cut(s) | 18, 349, 479, 994 |
| Fnu4HI | GCNGC | 5 cut(s) | 396, 836, 929, 934, 947 |
| FokI | GGATG | 1 cut(s) | 380 |
| Fsp4HI | GCNGC | 5 cut(s) | 396, 836, 929, 934, 947 |
| FspBI | CTAG | 2 cut(s) | 362, 494 |
| GlaI | GCGC | 3 cut(s) | 399, 681, 932 |
| GluI | GCNGC | 5 cut(s) | 396, 836, 929, 934, 947 |
| HaeII | RGCGCY | 1 cut(s) | 934 |
| HaeIII | GGCC | 5 cut(s) | 484, 805, 828, 848, 969 |
| HapII | CCGG | 9 cut(s) | 75, 188, 802, 816, 825, 845, 966, 970, 985 |
| HgaI | GACGC | 2 cut(s) | 218, 671 |
| HhaI | GCGC | 3 cut(s) | 400, 682, 933 |
| Hin1II | CATG | 4 cut(s) | 22, 353, 483, 998 |
| Hin6I | GCGC | 3 cut(s) | 398, 680, 931 |
| HinP1I | GCGC | 3 cut(s) | 398, 680, 931 |
| HincII | GTYRAC | 2 cut(s) | 127, 233 |
| HindII | GTYRAC | 2 cut(s) | 127, 233 |
| HinfI | GANTC | 2 cut(s) | 575, 914 |
| HpaII | CCGG | 9 cut(s) | 75, 188, 802, 816, 825, 845, 966, 970, 985 |
| Hpy166II | GTNNAC | 2 cut(s) | 127, 233 |
| Hpy188I | TCNGA | 5 cut(s) | 652, 722, 751, 812, 962 |
| Hpy188III | TCNNGA | 2 cut(s) | 514, 665 |
| Hpy8I | GTNNAC | 2 cut(s) | 127, 233 |
| Hpy99I | CGWCG | 1 cut(s) | 687 |
| HpyAV | CCTTC | 3 cut(s) | 47, 345, 671 |
| HpyCH4III | ACNGT | 4 cut(s) | 131, 316, 451, 511 |
| HpyCH4IV | ACGT | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 4 cut(s) | 81, 270, 936, 946 |
| HpyF3I | CTNAG | 1 cut(s) | 258 |
| HpySE526I | ACGT | 1 cut(s) | 252 |
| Hsp92II | CATG | 4 cut(s) | 22, 353, 483, 998 |
| HspAI | GCGC | 3 cut(s) | 398, 680, 931 |
| Kzo9I | GATC | 2 cut(s) | 331, 807 |
| LmnI | GCTCC | 1 cut(s) | 184 |
| Lsp1109I | GCAGC | 2 cut(s) | 920, 958 |
| LweI | GCATC | 1 cut(s) | 216 |
| MaeI | CTAG | 2 cut(s) | 362, 494 |
| MaeII | ACGT | 1 cut(s) | 252 |
| MalI | GATC | 2 cut(s) | 333, 809 |
| MboI | GATC | 2 cut(s) | 331, 807 |
| MboII | GAAGA | 9 cut(s) | 167, 556, 559, 581, 592, 643, 764, 786, 909 |
| MflI | RGATCY | 1 cut(s) | 331 |
| MluCI | AATT | 3 cut(s) | 441, 587, 602 |
| MlyI | GAGTC | 1 cut(s) | 569 |
| MmeI | TCCRAC | 2 cut(s) | 42, 835 |
| MroXI | GAANNNNTTC | 1 cut(s) | 778 |
| MseI | TTAA | 3 cut(s) | 48, 242, 767 |
| MslI | CAYNNNNRTG | 1 cut(s) | 317 |
| MspI | CCGG | 9 cut(s) | 75, 188, 802, 816, 825, 845, 966, 970, 985 |
| MspR9I | CCNGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| MvnI | CGCG | 3 cut(s) | 398, 682, 713 |
| NciI | CCSGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| NdeII | GATC | 2 cut(s) | 331, 807 |
| NlaIII | CATG | 4 cut(s) | 22, 353, 483, 998 |
| NlaIV | GGNNCC | 4 cut(s) | 186, 333, 609, 964 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 788, 877 |
| PdmI | GAANNNNTTC | 1 cut(s) | 778 |
| PfeI | GAWTC | 1 cut(s) | 914 |
| PkrI | GCNGC | 5 cut(s) | 397, 837, 930, 935, 948 |
| PleI | GAGTC | 1 cut(s) | 569 |
| PpsI | GAGTC | 1 cut(s) | 569 |
| PspN4I | GGNNCC | 4 cut(s) | 186, 333, 609, 964 |
| PspPI | GGNCC | 1 cut(s) | 962 |
| PsuI | RGATCY | 1 cut(s) | 331 |
| RseI | CAYNNNNRTG | 1 cut(s) | 317 |
| SaqAI | TTAA | 3 cut(s) | 48, 242, 767 |
| SatI | GCNGC | 5 cut(s) | 396, 836, 929, 934, 947 |
| Sau3AI | GATC | 2 cut(s) | 331, 807 |
| Sau96I | GGNCC | 1 cut(s) | 962 |
| SchI | GAGTC | 1 cut(s) | 569 |
| ScrFI | CCNGG | 5 cut(s) | 75, 76, 802, 816, 966 |
| SfaNI | GCATC | 1 cut(s) | 216 |
| SfcI | CTRYAG | 1 cut(s) | 507 |
| SinI | GGWCC | 1 cut(s) | 962 |
| SmaI | CCCGGG | 1 cut(s) | 76 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 317 |
| SmlI | CTYRAG | 2 cut(s) | 110, 401 |
| SmoI | CTYRAG | 2 cut(s) | 110, 401 |
| Sse9I | AATT | 3 cut(s) | 441, 587, 602 |
| SsiI | CCGC | 5 cut(s) | 396, 713, 835, 838, 928 |
| SspMI | CTAG | 2 cut(s) | 362, 494 |
| StyD4I | CCNGG | 5 cut(s) | 73, 74, 800, 814, 964 |
| StyI | CCWWGG | 1 cut(s) | 525 |
| TaaI | ACNGT | 4 cut(s) | 131, 316, 451, 511 |
| TaiI | ACGT | 1 cut(s) | 255 |
| TaqI | TCGA | 4 cut(s) | 578, 685, 772, 782 |
| TasI | AATT | 3 cut(s) | 441, 587, 602 |
| TauI | GCSGC | 3 cut(s) | 398, 838, 931 |
| TfiI | GAWTC | 1 cut(s) | 914 |
| Tru1I | TTAA | 3 cut(s) | 48, 242, 767 |
| Tru9I | TTAA | 3 cut(s) | 48, 242, 767 |
| TscAI | CASTG | 2 cut(s) | 319, 456 |
| TseI | GCWGC | 2 cut(s) | 933, 946 |
| TspDTI | ATGAA | 3 cut(s) | 338, 453, 615 |
| TspGWI | ACGGA | 2 cut(s) | 751, 869 |
| TspMI | CCCGGG | 1 cut(s) | 74 |
| TspRI | CASTG | 2 cut(s) | 319, 456 |
| VpaK11BI | GGWCC | 1 cut(s) | 962 |
| XapI | RAATTY | 1 cut(s) | 587 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 347 |
| XmaI | CCCGGG | 1 cut(s) | 74 |
| XmnI | GAANNNNTTC | 1 cut(s) | 778 |
| XspI | CTAG | 2 cut(s) | 362, 494 |