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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 133 |
| AccII | CGCG | 1 cut(s) | 196 |
| AciI | CCGC | 4 cut(s) | 59, 194, 234, 254 |
| AcoI | YGGCCR | 1 cut(s) | 546 |
| AcsI | RAATTY | 1 cut(s) | 268 |
| AcuI | CTGAAG | 2 cut(s) | 165, 625 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 263 |
| AflII | CTTAAG | 2 cut(s) | 46, 536 |
| AgsI | TTSAA | 1 cut(s) | 571 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AluBI | AGCT | 3 cut(s) | 209, 343, 511 |
| AluI | AGCT | 3 cut(s) | 209, 343, 511 |
| Alw26I | GTCTC | 1 cut(s) | 94 |
| AoxI | GGCC | 1 cut(s) | 546 |
| ApeKI | GCWGC | 2 cut(s) | 511, 690 |
| ApoI | RAATTY | 1 cut(s) | 268 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 284, 316 |
| AspA2I | CCTAGG | 1 cut(s) | 182 |
| AspLEI | GCGC | 1 cut(s) | 433 |
| AsuHPI | GGTGA | 1 cut(s) | 574 |
| AvrII | CCTAGG | 1 cut(s) | 182 |
| AxyI | CCTNAGG | 1 cut(s) | 598 |
| BalI | TGGCCA | 1 cut(s) | 548 |
| BbvI | GCAGC | 2 cut(s) | 498, 677 |
| BccI | CCATC | 3 cut(s) | 16, 593, 644 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 37 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BclI | TGATCA | 1 cut(s) | 490 |
| BcoDI | GTCTC | 1 cut(s) | 94 |
| BfaI | CTAG | 2 cut(s) | 33, 183 |
| BfmI | CTRYAG | 1 cut(s) | 39 |
| BfoI | RGCGCY | 1 cut(s) | 434 |
| BfrI | CTTAAG | 2 cut(s) | 46, 536 |
| BfuAI | ACCTGC | 1 cut(s) | 133 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 170, 554 |
| BglII | AGATCT | 2 cut(s) | 35, 710 |
| BisI | GCNGC | 2 cut(s) | 512, 691 |
| BlnI | CCTAGG | 1 cut(s) | 182 |
| BlsI | GCNGC | 2 cut(s) | 513, 692 |
| Bme1390I | CCNGG | 1 cut(s) | 238 |
| BmrFI | CCNGG | 1 cut(s) | 238 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaBI | GATNNNNATC | 2 cut(s) | 489, 584 |
| BsaJI | CCNNGG | 1 cut(s) | 182 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 139, 183, 263 |
| Bse118I | RCCGGY | 1 cut(s) | 686 |
| Bse1I | ACTGG | 1 cut(s) | 306 |
| Bse21I | CCTNAGG | 1 cut(s) | 598 |
| Bse8I | GATNNNNATC | 2 cut(s) | 489, 584 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseDI | CCNNGG | 1 cut(s) | 182 |
| BseGI | GGATG | 5 cut(s) | 232, 340, 580, 585, 655 |
| BseJI | GATNNNNATC | 2 cut(s) | 489, 584 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 263 |
| BseMII | CTCAG | 1 cut(s) | 227 |
| BseNI | ACTGG | 1 cut(s) | 306 |
| BseRI | GAGGAG | 5 cut(s) | 329, 353, 386, 389, 469 |
| BseXI | GCAGC | 2 cut(s) | 498, 677 |
| BsgI | GTGCAG | 1 cut(s) | 83 |
| Bsh1236I | CGCG | 1 cut(s) | 196 |
| BshFI | GGCC | 1 cut(s) | 548 |
| BsiSI | CCGG | 1 cut(s) | 687 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 139, 183, 263 |
| BsmAI | GTCTC | 1 cut(s) | 94 |
| BsmBI | CGTCTC | 1 cut(s) | 94 |
| BsnI | GGCC | 1 cut(s) | 548 |
| Bsp143I | GATC | 4 cut(s) | 35, 490, 579, 710 |
| BspACI | CCGC | 4 cut(s) | 59, 194, 234, 254 |
| BspANI | GGCC | 1 cut(s) | 548 |
| BspCNI | CTCAG | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 196 |
| BspHI | TCATGA | 1 cut(s) | 493 |
| BspMI | ACCTGC | 1 cut(s) | 133 |
| BspTI | CTTAAG | 2 cut(s) | 46, 536 |
| BsrFI | RCCGGY | 1 cut(s) | 686 |
| BsrI | ACTGG | 1 cut(s) | 306 |
| BssAI | RCCGGY | 1 cut(s) | 686 |
| BssECI | CCNNGG | 1 cut(s) | 182 |
| BssMI | GATC | 4 cut(s) | 35, 490, 579, 710 |
| BssT1I | CCWWGG | 1 cut(s) | 182 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstAFI | CTTAAG | 2 cut(s) | 46, 536 |
| BstC8I | GCNNGC | 3 cut(s) | 16, 429, 688 |
| BstDEI | CTNAG | 3 cut(s) | 135, 213, 598 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| BstF5I | GGATG | 5 cut(s) | 232, 340, 580, 585, 655 |
| BstFNI | CGCG | 1 cut(s) | 196 |
| BstH2I | RGCGCY | 1 cut(s) | 434 |
| BstHHI | GCGC | 1 cut(s) | 433 |
| BstKTI | GATC | 4 cut(s) | 38, 493, 582, 713 |
| BstMAI | GTCTC | 1 cut(s) | 94 |
| BstMBI | GATC | 4 cut(s) | 35, 490, 579, 710 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 170, 439, 554 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstSCI | CCNGG | 1 cut(s) | 236 |
| BstSFI | CTRYAG | 1 cut(s) | 39 |
| BstUI | CGCG | 1 cut(s) | 196 |
| BstV1I | GCAGC | 2 cut(s) | 498, 677 |
| BstX2I | RGATCY | 2 cut(s) | 35, 710 |
| BstYI | RGATCY | 2 cut(s) | 35, 710 |
| Bsu36I | CCTNAGG | 1 cut(s) | 598 |
| BsuRI | GGCC | 1 cut(s) | 548 |
| BtsCI | GGATG | 5 cut(s) | 232, 340, 580, 585, 655 |
| BveI | ACCTGC | 1 cut(s) | 133 |
| Cac8I | GCNNGC | 3 cut(s) | 16, 429, 688 |
| CciI | TCATGA | 1 cut(s) | 493 |
| CfoI | GCGC | 1 cut(s) | 433 |
| Cfr10I | RCCGGY | 1 cut(s) | 686 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 504, 539 |
| CviAII | CATG | 4 cut(s) | 494, 552, 661, 670 |
| DdeI | CTNAG | 3 cut(s) | 135, 213, 598 |
| DpnI | GATC | 4 cut(s) | 37, 492, 581, 712 |
| DpnII | GATC | 4 cut(s) | 35, 490, 579, 710 |
| DraI | TTTAAA | 1 cut(s) | 727 |
| EaeI | YGGCCR | 1 cut(s) | 546 |
| EciI | GGCGGA | 1 cut(s) | 223 |
| Eco130I | CCWWGG | 1 cut(s) | 182 |
| Eco32I | GATATC | 1 cut(s) | 620 |
| Eco57I | CTGAAG | 2 cut(s) | 165, 625 |
| Eco81I | CCTNAGG | 1 cut(s) | 598 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| EcoRV | GATATC | 1 cut(s) | 620 |
| EcoT14I | CCWWGG | 1 cut(s) | 182 |
| EcoT22I | ATGCAT | 1 cut(s) | 723 |
| ErhI | CCWWGG | 1 cut(s) | 182 |
| Esp3I | CGTCTC | 1 cut(s) | 94 |
| FaeI | CATG | 4 cut(s) | 497, 555, 664, 673 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 161, 193 |
| FatI | CATG | 4 cut(s) | 493, 551, 660, 669 |
| FbaI | TGATCA | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 2 cut(s) | 512, 691 |
| FokI | GGATG | 5 cut(s) | 239, 347, 572, 587, 662 |
| Fsp4HI | GCNGC | 2 cut(s) | 512, 691 |
| FspBI | CTAG | 2 cut(s) | 33, 183 |
| GlaI | GCGC | 1 cut(s) | 432 |
| GluI | GCNGC | 2 cut(s) | 512, 691 |
| HaeII | RGCGCY | 1 cut(s) | 434 |
| HaeIII | GGCC | 1 cut(s) | 548 |
| HapII | CCGG | 1 cut(s) | 687 |
| HhaI | GCGC | 1 cut(s) | 433 |
| Hin1II | CATG | 4 cut(s) | 497, 555, 664, 673 |
| Hin6I | GCGC | 1 cut(s) | 431 |
| HinP1I | GCGC | 1 cut(s) | 431 |
| HinfI | GANTC | 2 cut(s) | 4, 230 |
| HpaII | CCGG | 1 cut(s) | 687 |
| HphI | GGTGA | 1 cut(s) | 574 |
| Hpy166II | GTNNAC | 1 cut(s) | 122 |
| Hpy188I | TCNGA | 3 cut(s) | 94, 399, 644 |
| Hpy188III | TCNNGA | 2 cut(s) | 311, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 122 |
| Hpy99I | CGWCG | 1 cut(s) | 304 |
| HpyAV | CCTTC | 7 cut(s) | 133, 187, 271, 460, 565, 639, 667 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4IV | ACGT | 2 cut(s) | 73, 542 |
| HpyCH4V | TGCA | 6 cut(s) | 14, 64, 410, 427, 693, 721 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 170, 439, 554 |
| HpyF3I | CTNAG | 3 cut(s) | 135, 213, 598 |
| HpySE526I | ACGT | 2 cut(s) | 73, 542 |
| Hsp92II | CATG | 4 cut(s) | 497, 555, 664, 673 |
| HspAI | GCGC | 1 cut(s) | 431 |
| KroI | GCCGGC | 1 cut(s) | 686 |
| KroNI | GCCGGC | 1 cut(s) | 688 |
| Ksp22I | TGATCA | 1 cut(s) | 490 |
| Kzo9I | GATC | 4 cut(s) | 35, 490, 579, 710 |
| LmnI | GCTCC | 2 cut(s) | 340, 418 |
| LpnPI | CCDG | 7 cut(s) | 138, 223, 232, 249, 250, 319, 700 |
| Lsp1109I | GCAGC | 2 cut(s) | 498, 677 |
| MaeI | CTAG | 2 cut(s) | 33, 183 |
| MaeII | ACGT | 2 cut(s) | 73, 542 |
| MalI | GATC | 4 cut(s) | 37, 492, 581, 712 |
| MboI | GATC | 4 cut(s) | 35, 490, 579, 710 |
| MboII | GAAGA | 1 cut(s) | 631 |
| MflI | RGATCY | 2 cut(s) | 35, 710 |
| MlsI | TGGCCA | 1 cut(s) | 548 |
| MluCI | AATT | 4 cut(s) | 268, 447, 520, 608 |
| MluNI | TGGCCA | 1 cut(s) | 548 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| Mox20I | TGGCCA | 1 cut(s) | 548 |
| Mph1103I | ATGCAT | 1 cut(s) | 723 |
| MroNI | GCCGGC | 1 cut(s) | 686 |
| MscI | TGGCCA | 1 cut(s) | 548 |
| MseI | TTAA | 4 cut(s) | 47, 392, 537, 726 |
| MslI | CAYNNNNRTG | 1 cut(s) | 698 |
| Msp20I | TGGCCA | 1 cut(s) | 548 |
| MspCI | CTTAAG | 2 cut(s) | 46, 536 |
| MspI | CCGG | 1 cut(s) | 687 |
| MspR9I | CCNGG | 1 cut(s) | 238 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MvnI | CGCG | 1 cut(s) | 196 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 170, 439, 554 |
| NaeI | GCCGGC | 1 cut(s) | 688 |
| NdeII | GATC | 4 cut(s) | 35, 490, 579, 710 |
| NgoMIV | GCCGGC | 1 cut(s) | 686 |
| NlaIII | CATG | 4 cut(s) | 497, 555, 664, 673 |
| NsiI | ATGCAT | 1 cut(s) | 723 |
| PagI | TCATGA | 1 cut(s) | 493 |
| PdiI | GCCGGC | 1 cut(s) | 688 |
| PkrI | GCNGC | 2 cut(s) | 513, 692 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PsuI | RGATCY | 2 cut(s) | 35, 710 |
| RseI | CAYNNNNRTG | 1 cut(s) | 698 |
| SaqAI | TTAA | 4 cut(s) | 47, 392, 537, 726 |
| SatI | GCNGC | 2 cut(s) | 512, 691 |
| Sau3AI | GATC | 4 cut(s) | 35, 490, 579, 710 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 1 cut(s) | 238 |
| SfcI | CTRYAG | 1 cut(s) | 39 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 698 |
| SmlI | CTYRAG | 3 cut(s) | 46, 311, 536 |
| SmoI | CTYRAG | 3 cut(s) | 46, 311, 536 |
| Sse9I | AATT | 4 cut(s) | 268, 447, 520, 608 |
| SsiI | CCGC | 4 cut(s) | 59, 194, 234, 254 |
| SspMI | CTAG | 2 cut(s) | 33, 183 |
| StyD4I | CCNGG | 1 cut(s) | 236 |
| StyI | CCWWGG | 1 cut(s) | 182 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaiI | ACGT | 2 cut(s) | 76, 545 |
| TaqI | TCGA | 2 cut(s) | 23, 362 |
| TasI | AATT | 4 cut(s) | 268, 447, 520, 608 |
| Tru1I | TTAA | 4 cut(s) | 47, 392, 537, 726 |
| Tru9I | TTAA | 4 cut(s) | 47, 392, 537, 726 |
| TseI | GCWGC | 2 cut(s) | 511, 690 |
| TspDTI | ATGAA | 3 cut(s) | 83, 336, 686 |
| Vha464I | CTTAAG | 2 cut(s) | 46, 536 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 181, 261 |
| XapI | RAATTY | 1 cut(s) | 268 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 280 |
| XmaJI | CCTAGG | 1 cut(s) | 182 |
| XspI | CTAG | 2 cut(s) | 33, 183 |
| Zsp2I | ATGCAT | 1 cut(s) | 723 |