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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 419 |
| AccBSI | CCGCTC | 1 cut(s) | 53 |
| AciI | CCGC | 3 cut(s) | 53, 64, 299 |
| AcuI | CTGAAG | 4 cut(s) | 655, 661, 762, 791 |
| AfaI | GTAC | 2 cut(s) | 635, 695 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 436, 437, 665, 760 |
| AgsI | TTSAA | 6 cut(s) | 87, 134, 393, 616, 650, 655 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 328 |
| AjnI | CCWGG | 1 cut(s) | 158 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 653, 685 |
| AluBI | AGCT | 5 cut(s) | 345, 406, 551, 598, 675 |
| AluI | AGCT | 5 cut(s) | 345, 406, 551, 598, 675 |
| Alw21I | GWGCWC | 1 cut(s) | 600 |
| AspS9I | GGNCC | 2 cut(s) | 125, 688 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AvaII | GGWCC | 2 cut(s) | 125, 688 |
| BanII | GRGCYC | 2 cut(s) | 431, 600 |
| Bbv12I | GWGCWC | 1 cut(s) | 600 |
| BccI | CCATC | 2 cut(s) | 176, 454 |
| BciT130I | CCWGG | 1 cut(s) | 160 |
| BclI | TGATCA | 1 cut(s) | 235 |
| Bme1390I | CCNGG | 1 cut(s) | 160 |
| Bme18I | GGWCC | 2 cut(s) | 125, 688 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 328 |
| BmgT120I | GGNCC | 2 cut(s) | 125, 688 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmrFI | CCNGG | 1 cut(s) | 160 |
| BmsI | GCATC | 1 cut(s) | 44 |
| BoxI | GACNNNNGTC | 1 cut(s) | 123 |
| BpuEI | CTTGAG | 1 cut(s) | 611 |
| BsaAI | YACGTR | 1 cut(s) | 637 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 436, 437, 665, 760 |
| Bse1I | ACTGG | 1 cut(s) | 691 |
| Bse3DI | GCAATG | 1 cut(s) | 355 |
| BseBI | CCWGG | 1 cut(s) | 160 |
| BseGI | GGATG | 1 cut(s) | 621 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 436, 437, 665, 760 |
| BseMI | GCAATG | 1 cut(s) | 355 |
| BseMII | CTCAG | 1 cut(s) | 726 |
| BseNI | ACTGG | 1 cut(s) | 691 |
| BsiHKAI | GWGCWC | 1 cut(s) | 600 |
| BslFI | GGGAC | 1 cut(s) | 512 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 436, 437, 665, 760 |
| BsmFI | GGGAC | 1 cut(s) | 512 |
| Bsp1286I | GDGCHC | 2 cut(s) | 431, 600 |
| Bsp143I | GATC | 2 cut(s) | 235, 396 |
| BspACI | CCGC | 3 cut(s) | 53, 64, 299 |
| BspCNI | CTCAG | 1 cut(s) | 725 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspQI | GCTCTTC | 1 cut(s) | 419 |
| BsrBI | CCGCTC | 1 cut(s) | 53 |
| BsrDI | GCAATG | 1 cut(s) | 355 |
| BsrI | ACTGG | 1 cut(s) | 691 |
| BssMI | GATC | 2 cut(s) | 235, 396 |
| Bst2UI | CCWGG | 1 cut(s) | 160 |
| Bst4CI | ACNGT | 1 cut(s) | 468 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 419 |
| BstBAI | YACGTR | 1 cut(s) | 637 |
| BstC8I | GCNNGC | 3 cut(s) | 64, 347, 600 |
| BstDEI | CTNAG | 2 cut(s) | 70, 712 |
| BstF5I | GGATG | 1 cut(s) | 621 |
| BstKTI | GATC | 2 cut(s) | 238, 399 |
| BstMBI | GATC | 2 cut(s) | 235, 396 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 59 |
| BstNI | CCWGG | 1 cut(s) | 160 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 123 |
| BstSCI | CCNGG | 1 cut(s) | 158 |
| BstSNI | TACGTA | 1 cut(s) | 637 |
| BtsCI | GGATG | 1 cut(s) | 621 |
| BtsI | GCAGTG | 1 cut(s) | 350 |
| BtsIMutI | CAGTG | 1 cut(s) | 350 |
| Cac8I | GCNNGC | 3 cut(s) | 64, 347, 600 |
| Cfr13I | GGNCC | 2 cut(s) | 125, 688 |
| CseI | GACGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 2 cut(s) | 634, 694 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 451, 486 |
| CviAII | CATG | 3 cut(s) | 509, 557, 665 |
| CviQI | GTAC | 2 cut(s) | 634, 694 |
| DdeI | CTNAG | 2 cut(s) | 70, 712 |
| DpnI | GATC | 2 cut(s) | 237, 398 |
| DpnII | GATC | 2 cut(s) | 235, 396 |
| DriI | GACNNNNNGTC | 1 cut(s) | 328 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 419 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 328 |
| EarI | CTCTTC | 2 cut(s) | 309, 419 |
| Ecl136II | GAGCTC | 1 cut(s) | 598 |
| Eco105I | TACGTA | 1 cut(s) | 637 |
| Eco24I | GRGCYC | 2 cut(s) | 431, 600 |
| Eco47I | GGWCC | 2 cut(s) | 125, 688 |
| Eco53kI | GAGCTC | 1 cut(s) | 598 |
| Eco57I | CTGAAG | 4 cut(s) | 655, 661, 762, 791 |
| EcoICRI | GAGCTC | 1 cut(s) | 598 |
| EcoRII | CCWGG | 1 cut(s) | 158 |
| EcoT38I | GRGCYC | 2 cut(s) | 431, 600 |
| FaeI | CATG | 3 cut(s) | 512, 560, 668 |
| FaqI | GGGAC | 1 cut(s) | 512 |
| FatI | CATG | 3 cut(s) | 508, 556, 664 |
| FauI | CCCGC | 2 cut(s) | 46, 71 |
| FbaI | TGATCA | 1 cut(s) | 235 |
| FokI | GGATG | 1 cut(s) | 608 |
| FriOI | GRGCYC | 2 cut(s) | 431, 600 |
| HgaI | GACGC | 1 cut(s) | 128 |
| Hin1II | CATG | 3 cut(s) | 512, 560, 668 |
| HindIII | AAGCTT | 1 cut(s) | 343 |
| HinfI | GANTC | 5 cut(s) | 166, 212, 289, 389, 682 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy166II | GTNNAC | 3 cut(s) | 24, 99, 696 |
| Hpy188I | TCNGA | 3 cut(s) | 50, 742, 771 |
| Hpy188III | TCNNGA | 2 cut(s) | 679, 686 |
| Hpy8I | GTNNAC | 3 cut(s) | 24, 99, 696 |
| Hpy99I | CGWCG | 1 cut(s) | 122 |
| HpyAV | CCTTC | 1 cut(s) | 379 |
| HpyCH4III | ACNGT | 1 cut(s) | 468 |
| HpyCH4IV | ACGT | 1 cut(s) | 636 |
| HpyCH4V | TGCA | 7 cut(s) | 35, 175, 328, 355, 360, 530, 797 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 2 cut(s) | 70, 712 |
| HpySE526I | ACGT | 1 cut(s) | 636 |
| Hsp92II | CATG | 3 cut(s) | 512, 560, 668 |
| Ksp22I | TGATCA | 1 cut(s) | 235 |
| Kzo9I | GATC | 2 cut(s) | 235, 396 |
| LguI | GCTCTTC | 1 cut(s) | 419 |
| LmnI | GCTCC | 2 cut(s) | 4, 50 |
| LpnPI | CCDG | 8 cut(s) | 45, 108, 145, 172, 468, 664, 671, 704 |
| LweI | GCATC | 1 cut(s) | 44 |
| MaeII | ACGT | 1 cut(s) | 636 |
| MaeIII | GTNAC | 3 cut(s) | 139, 330, 641 |
| MalI | GATC | 2 cut(s) | 237, 398 |
| MbiI | CCGCTC | 1 cut(s) | 53 |
| MboI | GATC | 2 cut(s) | 235, 396 |
| MboII | GAAGA | 7 cut(s) | 146, 175, 314, 323, 326, 436, 628 |
| MfeI | CAATTG | 1 cut(s) | 129 |
| MhlI | GDGCHC | 2 cut(s) | 431, 600 |
| MluCI | AATT | 5 cut(s) | 82, 129, 576, 650, 765 |
| MnlI | CCTC | 4 cut(s) | 18, 196, 489, 635 |
| MseI | TTAA | 1 cut(s) | 114 |
| MslI | CAYNNNNRTG | 1 cut(s) | 180 |
| MspR9I | CCNGG | 1 cut(s) | 160 |
| MunI | CAATTG | 1 cut(s) | 129 |
| MvaI | CCWGG | 1 cut(s) | 160 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 59 |
| NdeII | GATC | 2 cut(s) | 235, 396 |
| NlaIII | CATG | 3 cut(s) | 512, 560, 668 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 2 cut(s) | 330, 641 |
| PciSI | GCTCTTC | 1 cut(s) | 419 |
| PfeI | GAWTC | 5 cut(s) | 166, 212, 289, 389, 682 |
| Ppu21I | YACGTR | 1 cut(s) | 637 |
| PshAI | GACNNNNGTC | 1 cut(s) | 123 |
| PsiI | TTATAA | 1 cut(s) | 419 |
| Psp124BI | GAGCTC | 1 cut(s) | 600 |
| Psp6I | CCWGG | 1 cut(s) | 158 |
| PspGI | CCWGG | 1 cut(s) | 158 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PspPI | GGNCC | 2 cut(s) | 125, 688 |
| RsaI | GTAC | 2 cut(s) | 635, 695 |
| RsaNI | GTAC | 2 cut(s) | 634, 694 |
| RseI | CAYNNNNRTG | 1 cut(s) | 180 |
| SacI | GAGCTC | 1 cut(s) | 600 |
| SapI | GCTCTTC | 1 cut(s) | 419 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| Sau3AI | GATC | 2 cut(s) | 235, 396 |
| Sau96I | GGNCC | 2 cut(s) | 125, 688 |
| ScrFI | CCNGG | 1 cut(s) | 160 |
| SduI | GDGCHC | 2 cut(s) | 431, 600 |
| SetI | ASST | 9 cut(s) | 114, 230, 347, 408, 553, 600, 639, 677, 736 |
| SfaNI | GCATC | 1 cut(s) | 44 |
| SinI | GGWCC | 2 cut(s) | 125, 688 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 180 |
| SmlI | CTYRAG | 1 cut(s) | 626 |
| SmoI | CTYRAG | 1 cut(s) | 626 |
| SnaBI | TACGTA | 1 cut(s) | 637 |
| Sse9I | AATT | 5 cut(s) | 82, 129, 576, 650, 765 |
| SsiI | CCGC | 3 cut(s) | 53, 64, 299 |
| SspI | AATATT | 1 cut(s) | 705 |
| SstI | GAGCTC | 1 cut(s) | 600 |
| StyD4I | CCNGG | 1 cut(s) | 158 |
| TaaI | ACNGT | 1 cut(s) | 468 |
| TaiI | ACGT | 1 cut(s) | 639 |
| TaqI | TCGA | 1 cut(s) | 399 |
| TasI | AATT | 5 cut(s) | 82, 129, 576, 650, 765 |
| TatI | WGTACW | 1 cut(s) | 693 |
| TfiI | GAWTC | 5 cut(s) | 166, 212, 289, 389, 682 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TscAI | CASTG | 1 cut(s) | 357 |
| TseFI | GTSAC | 2 cut(s) | 330, 641 |
| Tsp45I | GTSAC | 2 cut(s) | 330, 641 |
| TspDTI | ATGAA | 1 cut(s) | 597 |
| TspGWI | ACGGA | 1 cut(s) | 578 |
| TspRI | CASTG | 1 cut(s) | 357 |
| VpaK11BI | GGWCC | 2 cut(s) | 125, 688 |