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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 267 |
| AciI | CCGC | 1 cut(s) | 354 |
| AclWI | GGATC | 3 cut(s) | 158, 389, 402 |
| AcsI | RAATTY | 1 cut(s) | 261 |
| AcuI | CTGAAG | 1 cut(s) | 77 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 508 |
| AjnI | CCWGG | 4 cut(s) | 136, 205, 286, 507 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 102, 134 |
| AluBI | AGCT | 4 cut(s) | 48, 62, 86, 281 |
| AluI | AGCT | 4 cut(s) | 48, 62, 86, 281 |
| AlwI | GGATC | 3 cut(s) | 158, 389, 402 |
| AoxI | GGCC | 3 cut(s) | 139, 231, 289 |
| ApeKI | GCWGC | 2 cut(s) | 6, 83 |
| ApoI | RAATTY | 1 cut(s) | 261 |
| AspLEI | GCGC | 2 cut(s) | 372, 445 |
| AsuHPI | GGTGA | 2 cut(s) | 119, 497 |
| BamHI | GGATCC | 1 cut(s) | 394 |
| BbvI | GCAGC | 2 cut(s) | 18, 95 |
| BceAI | ACGGC | 2 cut(s) | 126, 276 |
| BciT130I | CCWGG | 4 cut(s) | 138, 207, 288, 509 |
| BfaI | CTAG | 2 cut(s) | 80, 282 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfoI | RGCGCY | 1 cut(s) | 446 |
| BisI | GCNGC | 2 cut(s) | 7, 84 |
| BlsI | GCNGC | 2 cut(s) | 8, 85 |
| Bme1390I | CCNGG | 4 cut(s) | 138, 207, 288, 509 |
| BmiI | GGNNCC | 1 cut(s) | 396 |
| BmrFI | CCNGG | 4 cut(s) | 138, 207, 288, 509 |
| BmsI | GCATC | 2 cut(s) | 114, 357 |
| BsaJI | CCNNGG | 2 cut(s) | 402, 426 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 508 |
| BseBI | CCWGG | 4 cut(s) | 138, 207, 288, 509 |
| BseDI | CCNNGG | 2 cut(s) | 402, 426 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 508 |
| BseMII | CTCAG | 1 cut(s) | 352 |
| BseXI | GCAGC | 2 cut(s) | 18, 95 |
| BsgI | GTGCAG | 1 cut(s) | 25 |
| BshFI | GGCC | 3 cut(s) | 141, 233, 291 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 508 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| BsmI | GAATGC | 1 cut(s) | 356 |
| BsnI | GGCC | 3 cut(s) | 141, 233, 291 |
| Bsp143I | GATC | 3 cut(s) | 68, 150, 394 |
| BspACI | CCGC | 1 cut(s) | 354 |
| BspANI | GGCC | 3 cut(s) | 141, 233, 291 |
| BspCNI | CTCAG | 1 cut(s) | 351 |
| BspHI | TCATGA | 1 cut(s) | 375 |
| BspLI | GGNNCC | 1 cut(s) | 396 |
| BspPI | GGATC | 3 cut(s) | 158, 389, 402 |
| BssECI | CCNNGG | 2 cut(s) | 402, 426 |
| BssMI | GATC | 3 cut(s) | 68, 150, 394 |
| BssT1I | CCWWGG | 2 cut(s) | 402, 426 |
| Bst2UI | CCWGG | 4 cut(s) | 138, 207, 288, 509 |
| Bst4CI | ACNGT | 3 cut(s) | 37, 107, 184 |
| Bst6I | CTCTTC | 1 cut(s) | 222 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 1 cut(s) | 338 |
| BstH2I | RGCGCY | 1 cut(s) | 446 |
| BstHHI | GCGC | 2 cut(s) | 372, 445 |
| BstKTI | GATC | 3 cut(s) | 71, 153, 397 |
| BstMBI | GATC | 3 cut(s) | 68, 150, 394 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 15 |
| BstNI | CCWGG | 4 cut(s) | 138, 207, 288, 509 |
| BstSCI | CCNGG | 4 cut(s) | 136, 205, 286, 507 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 2 cut(s) | 18, 95 |
| BstX2I | RGATCY | 2 cut(s) | 150, 394 |
| BstYI | RGATCY | 2 cut(s) | 150, 394 |
| BsuRI | GGCC | 3 cut(s) | 141, 233, 291 |
| BtsI | GCAGTG | 1 cut(s) | 349 |
| BtsIMutI | CAGTG | 1 cut(s) | 349 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CciI | TCATGA | 1 cut(s) | 375 |
| CfoI | GCGC | 2 cut(s) | 372, 445 |
| CviAII | CATG | 3 cut(s) | 10, 376, 391 |
| CviJI | RGCY | 8 cut(s) | 18, 48, 62, 86, 141, 233, 281, 291 |
| CviKI_1 | RGCY | 8 cut(s) | 18, 48, 62, 86, 141, 233, 281, 291 |
| DdeI | CTNAG | 1 cut(s) | 338 |
| DpnI | GATC | 3 cut(s) | 70, 152, 396 |
| DpnII | GATC | 3 cut(s) | 68, 150, 394 |
| Eam1104I | CTCTTC | 1 cut(s) | 222 |
| EarI | CTCTTC | 1 cut(s) | 222 |
| Eco130I | CCWWGG | 2 cut(s) | 402, 426 |
| Eco57I | CTGAAG | 1 cut(s) | 77 |
| EcoRII | CCWGG | 4 cut(s) | 136, 205, 286, 507 |
| EcoT14I | CCWWGG | 2 cut(s) | 402, 426 |
| ErhI | CCWWGG | 2 cut(s) | 402, 426 |
| FaeI | CATG | 3 cut(s) | 13, 379, 394 |
| FaiI | YATR | 9 cut(s) | 11, 257, 267, 278, 363, 377, 392, 423, 448 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FatI | CATG | 3 cut(s) | 9, 375, 390 |
| FauI | CCCGC | 1 cut(s) | 347 |
| Fnu4HI | GCNGC | 2 cut(s) | 7, 84 |
| Fsp4HI | GCNGC | 2 cut(s) | 7, 84 |
| FspBI | CTAG | 2 cut(s) | 80, 282 |
| GlaI | GCGC | 2 cut(s) | 371, 444 |
| GluI | GCNGC | 2 cut(s) | 7, 84 |
| HaeII | RGCGCY | 1 cut(s) | 446 |
| HaeIII | GGCC | 3 cut(s) | 141, 233, 291 |
| HhaI | GCGC | 2 cut(s) | 372, 445 |
| Hin1II | CATG | 3 cut(s) | 13, 379, 394 |
| Hin6I | GCGC | 2 cut(s) | 370, 443 |
| HinP1I | GCGC | 2 cut(s) | 370, 443 |
| HinfI | GANTC | 1 cut(s) | 197 |
| HphI | GGTGA | 2 cut(s) | 119, 497 |
| Hpy166II | GTNNAC | 1 cut(s) | 110 |
| Hpy188I | TCNGA | 1 cut(s) | 96 |
| Hpy188III | TCNNGA | 3 cut(s) | 121, 194, 376 |
| Hpy8I | GTNNAC | 1 cut(s) | 110 |
| HpyAV | CCTTC | 2 cut(s) | 408, 512 |
| HpyCH4III | ACNGT | 3 cut(s) | 37, 107, 184 |
| HpyCH4V | TGCA | 1 cut(s) | 6 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 15 |
| HpyF3I | CTNAG | 1 cut(s) | 338 |
| Hsp92II | CATG | 3 cut(s) | 13, 379, 394 |
| HspAI | GCGC | 2 cut(s) | 370, 443 |
| Kzo9I | GATC | 3 cut(s) | 68, 150, 394 |
| Lsp1109I | GCAGC | 2 cut(s) | 18, 95 |
| LweI | GCATC | 2 cut(s) | 114, 357 |
| MaeI | CTAG | 2 cut(s) | 80, 282 |
| MalI | GATC | 3 cut(s) | 70, 152, 396 |
| MboI | GATC | 3 cut(s) | 68, 150, 394 |
| MboII | GAAGA | 2 cut(s) | 239, 427 |
| MfeI | CAATTG | 1 cut(s) | 462 |
| MflI | RGATCY | 2 cut(s) | 150, 394 |
| MluCI | AATT | 3 cut(s) | 261, 268, 462 |
| MnlI | CCTC | 3 cut(s) | 90, 223, 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MspR9I | CCNGG | 4 cut(s) | 138, 207, 288, 509 |
| MunI | CAATTG | 1 cut(s) | 462 |
| Mva1269I | GAATGC | 1 cut(s) | 356 |
| MvaI | CCWGG | 4 cut(s) | 138, 207, 288, 509 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 15 |
| NdeII | GATC | 3 cut(s) | 68, 150, 394 |
| NlaIII | CATG | 3 cut(s) | 13, 379, 394 |
| NlaIV | GGNNCC | 1 cut(s) | 396 |
| PagI | TCATGA | 1 cut(s) | 375 |
| PctI | GAATGC | 1 cut(s) | 356 |
| PfeI | GAWTC | 1 cut(s) | 197 |
| PkrI | GCNGC | 2 cut(s) | 8, 85 |
| PsiI | TTATAA | 1 cut(s) | 267 |
| Psp6I | CCWGG | 4 cut(s) | 136, 205, 286, 507 |
| PspGI | CCWGG | 4 cut(s) | 136, 205, 286, 507 |
| PspN4I | GGNNCC | 1 cut(s) | 396 |
| PsuI | RGATCY | 2 cut(s) | 150, 394 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SatI | GCNGC | 2 cut(s) | 7, 84 |
| Sau3AI | GATC | 3 cut(s) | 68, 150, 394 |
| ScrFI | CCNGG | 4 cut(s) | 138, 207, 288, 509 |
| SetI | ASST | 5 cut(s) | 50, 64, 88, 283, 510 |
| SfaNI | GCATC | 2 cut(s) | 114, 357 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| Sse9I | AATT | 3 cut(s) | 261, 268, 462 |
| SsiI | CCGC | 1 cut(s) | 354 |
| SspMI | CTAG | 2 cut(s) | 80, 282 |
| StyD4I | CCNGG | 4 cut(s) | 136, 205, 286, 507 |
| StyI | CCWWGG | 2 cut(s) | 402, 426 |
| TaaI | ACNGT | 3 cut(s) | 37, 107, 184 |
| TaqI | TCGA | 4 cut(s) | 24, 88, 222, 348 |
| TasI | AATT | 3 cut(s) | 261, 268, 462 |
| TfiI | GAWTC | 1 cut(s) | 197 |
| TscAI | CASTG | 1 cut(s) | 349 |
| TseI | GCWGC | 2 cut(s) | 6, 83 |
| TspDTI | ATGAA | 4 cut(s) | 240, 364, 483, 495 |
| TspRI | CASTG | 1 cut(s) | 349 |
| XapI | RAATTY | 1 cut(s) | 261 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 144 |
| XspI | CTAG | 2 cut(s) | 80, 282 |