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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 419 |
| AciI | CCGC | 2 cut(s) | 296, 379 |
| AcoI | YGGCCR | 1 cut(s) | 399 |
| AcuI | CTGAAG | 1 cut(s) | 68 |
| AfaI | GTAC | 1 cut(s) | 107 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 429 |
| AgsI | TTSAA | 7 cut(s) | 15, 31, 416, 427, 441, 451, 457 |
| AluBI | AGCT | 4 cut(s) | 355, 410, 445, 546 |
| AluI | AGCT | 4 cut(s) | 355, 410, 445, 546 |
| AoxI | GGCC | 1 cut(s) | 399 |
| ApeKI | GCWGC | 1 cut(s) | 407 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 311 |
| AspS9I | GGNCC | 1 cut(s) | 498 |
| AsuHPI | GGTGA | 1 cut(s) | 353 |
| AvaII | GGWCC | 1 cut(s) | 498 |
| BalI | TGGCCA | 1 cut(s) | 401 |
| BanI | GGYRCC | 1 cut(s) | 419 |
| BbvI | GCAGC | 1 cut(s) | 419 |
| BccI | CCATC | 3 cut(s) | 261, 324, 532 |
| BfaI | CTAG | 2 cut(s) | 211, 284 |
| BisI | GCNGC | 2 cut(s) | 296, 408 |
| BlsI | GCNGC | 2 cut(s) | 297, 409 |
| Bme18I | GGWCC | 1 cut(s) | 498 |
| BmgT120I | GGNCC | 1 cut(s) | 498 |
| BmiI | GGNNCC | 1 cut(s) | 421 |
| BmsI | GCATC | 1 cut(s) | 338 |
| Bpu10I | CCTNAGC | 1 cut(s) | 239 |
| BsaAI | YACGTR | 1 cut(s) | 109 |
| BsaJI | CCNNGG | 1 cut(s) | 402 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 295, 325 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 429 |
| Bse3DI | GCAATG | 1 cut(s) | 233 |
| BseDI | CCNNGG | 1 cut(s) | 402 |
| BseGI | GGATG | 1 cut(s) | 543 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BseMI | GCAATG | 1 cut(s) | 233 |
| BseMII | CTCAG | 2 cut(s) | 80, 253 |
| BseRI | GAGGAG | 1 cut(s) | 532 |
| BseXI | GCAGC | 1 cut(s) | 419 |
| BshFI | GGCC | 1 cut(s) | 401 |
| BshNI | GGYRCC | 1 cut(s) | 419 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 429 |
| BsnI | GGCC | 1 cut(s) | 401 |
| BspACI | CCGC | 2 cut(s) | 296, 379 |
| BspANI | GGCC | 1 cut(s) | 401 |
| BspCNI | CTCAG | 2 cut(s) | 81, 252 |
| BspLI | GGNNCC | 1 cut(s) | 421 |
| BspT107I | GGYRCC | 1 cut(s) | 419 |
| BsrDI | GCAATG | 1 cut(s) | 233 |
| BssECI | CCNNGG | 1 cut(s) | 402 |
| BssT1I | CCWWGG | 1 cut(s) | 402 |
| Bst6I | CTCTTC | 2 cut(s) | 10, 212 |
| BstBAI | YACGTR | 1 cut(s) | 109 |
| BstC8I | GCNNGC | 1 cut(s) | 353 |
| BstDEI | CTNAG | 2 cut(s) | 89, 239 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 427 |
| BstF5I | GGATG | 1 cut(s) | 543 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 407, 469 |
| BstV1I | GCAGC | 1 cut(s) | 419 |
| BsuRI | GGCC | 1 cut(s) | 401 |
| BtgZI | GCGATG | 1 cut(s) | 343 |
| BtsCI | GGATG | 1 cut(s) | 543 |
| Cac8I | GCNNGC | 1 cut(s) | 353 |
| Cfr13I | GGNCC | 1 cut(s) | 498 |
| Csp6I | GTAC | 1 cut(s) | 106 |
| CviQI | GTAC | 1 cut(s) | 106 |
| DdeI | CTNAG | 2 cut(s) | 89, 239 |
| EaeI | YGGCCR | 1 cut(s) | 399 |
| Eam1104I | CTCTTC | 2 cut(s) | 10, 212 |
| EarI | CTCTTC | 2 cut(s) | 10, 212 |
| Eco130I | CCWWGG | 1 cut(s) | 402 |
| Eco47I | GGWCC | 1 cut(s) | 498 |
| Eco57I | CTGAAG | 1 cut(s) | 68 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 427 |
| EcoT14I | CCWWGG | 1 cut(s) | 402 |
| ErhI | CCWWGG | 1 cut(s) | 402 |
| FaiI | YATR | 1 cut(s) | 141 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 282, 314 |
| Fnu4HI | GCNGC | 2 cut(s) | 296, 408 |
| FokI | GGATG | 1 cut(s) | 550 |
| Fsp4HI | GCNGC | 2 cut(s) | 296, 408 |
| FspBI | CTAG | 2 cut(s) | 211, 284 |
| GluI | GCNGC | 2 cut(s) | 296, 408 |
| HaeIII | GGCC | 1 cut(s) | 401 |
| HinfI | GANTC | 1 cut(s) | 358 |
| HphI | GGTGA | 1 cut(s) | 353 |
| Hpy188I | TCNGA | 2 cut(s) | 68, 317 |
| Hpy188III | TCNNGA | 3 cut(s) | 4, 88, 241 |
| HpyAV | CCTTC | 3 cut(s) | 25, 43, 143 |
| HpyCH4IV | ACGT | 1 cut(s) | 108 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 407, 469 |
| HpyF3I | CTNAG | 2 cut(s) | 89, 239 |
| HpySE526I | ACGT | 1 cut(s) | 108 |
| LmnI | GCTCC | 2 cut(s) | 270, 543 |
| LpnPI | CCDG | 9 cut(s) | 59, 101, 174, 226, 365, 383, 383, 419, 514 |
| Lsp1109I | GCAGC | 1 cut(s) | 419 |
| LweI | GCATC | 1 cut(s) | 338 |
| MaeI | CTAG | 2 cut(s) | 211, 284 |
| MaeII | ACGT | 1 cut(s) | 108 |
| MaeIII | GTNAC | 1 cut(s) | 372 |
| MboII | GAAGA | 5 cut(s) | 27, 190, 216, 229, 489 |
| MlsI | TGGCCA | 1 cut(s) | 401 |
| MluCI | AATT | 3 cut(s) | 278, 452, 481 |
| MluNI | TGGCCA | 1 cut(s) | 401 |
| MlyI | GAGTC | 1 cut(s) | 352 |
| MmeI | TCCRAC | 1 cut(s) | 242 |
| MnlI | CCTC | 4 cut(s) | 11, 297, 489, 510 |
| Mox20I | TGGCCA | 1 cut(s) | 401 |
| MroXI | GAANNNNTTC | 1 cut(s) | 311 |
| MscI | TGGCCA | 1 cut(s) | 401 |
| MseI | TTAA | 3 cut(s) | 200, 335, 490 |
| Msp20I | TGGCCA | 1 cut(s) | 401 |
| MspA1I | CMGCKG | 3 cut(s) | 355, 381, 410 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 407, 469 |
| NlaIV | GGNNCC | 1 cut(s) | 421 |
| NmuCI | GTSAC | 1 cut(s) | 372 |
| PdmI | GAANNNNTTC | 1 cut(s) | 311 |
| PkrI | GCNGC | 2 cut(s) | 297, 409 |
| PleI | GAGTC | 1 cut(s) | 352 |
| PpsI | GAGTC | 1 cut(s) | 352 |
| Ppu21I | YACGTR | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 421 |
| PspPI | GGNCC | 1 cut(s) | 498 |
| PvuII | CAGCTG | 2 cut(s) | 355, 410 |
| RsaI | GTAC | 1 cut(s) | 107 |
| RsaNI | GTAC | 1 cut(s) | 106 |
| SaqAI | TTAA | 3 cut(s) | 200, 335, 490 |
| SatI | GCNGC | 2 cut(s) | 296, 408 |
| Sau96I | GGNCC | 1 cut(s) | 498 |
| SchI | GAGTC | 1 cut(s) | 352 |
| SetI | ASST | 9 cut(s) | 111, 156, 313, 357, 372, 412, 425, 447, 548 |
| SfaNI | GCATC | 1 cut(s) | 338 |
| SinI | GGWCC | 1 cut(s) | 498 |
| Sse9I | AATT | 3 cut(s) | 278, 452, 481 |
| SsiI | CCGC | 2 cut(s) | 296, 379 |
| SspMI | CTAG | 2 cut(s) | 211, 284 |
| StyI | CCWWGG | 1 cut(s) | 402 |
| TaiI | ACGT | 1 cut(s) | 111 |
| TasI | AATT | 3 cut(s) | 278, 452, 481 |
| TauI | GCSGC | 1 cut(s) | 298 |
| Tru1I | TTAA | 3 cut(s) | 200, 335, 490 |
| Tru9I | TTAA | 3 cut(s) | 200, 335, 490 |
| TseFI | GTSAC | 1 cut(s) | 372 |
| TseI | GCWGC | 1 cut(s) | 407 |
| Tsp45I | GTSAC | 1 cut(s) | 372 |
| TspDTI | ATGAA | 2 cut(s) | 136, 539 |
| VpaK11BI | GGWCC | 1 cut(s) | 498 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 427 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XmnI | GAANNNNTTC | 1 cut(s) | 311 |
| XspI | CTAG | 2 cut(s) | 211, 284 |