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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 513 |
| Acc65I | GGTACC | 1 cut(s) | 486 |
| AccB1I | GGYRCC | 2 cut(s) | 289, 486 |
| AccII | CGCG | 2 cut(s) | 61, 80 |
| AccIII | TCCGGA | 1 cut(s) | 688 |
| AciI | CCGC | 3 cut(s) | 78, 719, 870 |
| AclWI | GGATC | 3 cut(s) | 8, 21, 680 |
| AcoI | YGGCCR | 1 cut(s) | 279 |
| AcsI | RAATTY | 2 cut(s) | 269, 828 |
| AcuI | CTGAAG | 1 cut(s) | 402 |
| AfaI | GTAC | 2 cut(s) | 488, 875 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 695 |
| AflIII | ACRYGT | 1 cut(s) | 918 |
| AgsI | TTSAA | 5 cut(s) | 128, 269, 313, 346, 505 |
| AjnI | CCWGG | 2 cut(s) | 625, 969 |
| AleI | CACNNNNGTG | 1 cut(s) | 1025 |
| AluBI | AGCT | 2 cut(s) | 218, 305 |
| AluI | AGCT | 2 cut(s) | 218, 305 |
| Alw21I | GWGCWC | 1 cut(s) | 1032 |
| Alw44I | GTGCAC | 1 cut(s) | 1028 |
| AlwI | GGATC | 3 cut(s) | 8, 21, 680 |
| Aor13HI | TCCGGA | 1 cut(s) | 688 |
| AoxI | GGCC | 3 cut(s) | 164, 279, 588 |
| ApaLI | GTGCAC | 1 cut(s) | 1028 |
| ApeKI | GCWGC | 1 cut(s) | 643 |
| ApoI | RAATTY | 2 cut(s) | 269, 828 |
| Asp718I | GGTACC | 1 cut(s) | 486 |
| AspLEI | GCGC | 2 cut(s) | 61, 82 |
| AspS9I | GGNCC | 2 cut(s) | 589, 715 |
| AsuHPI | GGTGA | 2 cut(s) | 344, 671 |
| AsuNHI | GCTAGC | 1 cut(s) | 836 |
| AvaII | GGWCC | 1 cut(s) | 715 |
| BaeGI | GKGCMC | 1 cut(s) | 1032 |
| BalI | TGGCCA | 1 cut(s) | 281 |
| BamHI | GGATCC | 1 cut(s) | 13 |
| BanI | GGYRCC | 2 cut(s) | 289, 486 |
| Bbv12I | GWGCWC | 1 cut(s) | 1032 |
| BbvI | GCAGC | 1 cut(s) | 630 |
| BccI | CCATC | 4 cut(s) | 44, 77, 301, 344 |
| BciT130I | CCWGG | 2 cut(s) | 627, 971 |
| BciVI | GTATCC | 1 cut(s) | 757 |
| BclI | TGATCA | 2 cut(s) | 661, 982 |
| BfaI | CTAG | 4 cut(s) | 44, 176, 837, 855 |
| BfmI | CTRYAG | 1 cut(s) | 189 |
| BfuI | GTATCC | 1 cut(s) | 757 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 287 |
| BisI | GCNGC | 2 cut(s) | 78, 644 |
| BlsI | GCNGC | 2 cut(s) | 79, 645 |
| Bme1390I | CCNGG | 2 cut(s) | 627, 971 |
| Bme18I | GGWCC | 1 cut(s) | 715 |
| BmgT120I | GGNCC | 2 cut(s) | 589, 715 |
| BmiI | GGNNCC | 5 cut(s) | 15, 291, 378, 488, 717 |
| BmrFI | CCNGG | 2 cut(s) | 627, 971 |
| BmsI | GCATC | 1 cut(s) | 328 |
| BmtI | GCTAGC | 1 cut(s) | 840 |
| BpuEI | CTTGAG | 1 cut(s) | 104 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 626, 969 |
| BsaWI | WCCGGW | 1 cut(s) | 688 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 857, 887, 940, 970 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 695 |
| Bse1I | ACTGG | 1 cut(s) | 463 |
| Bse3DI | GCAATG | 1 cut(s) | 468 |
| BseAI | TCCGGA | 1 cut(s) | 688 |
| BseBI | CCWGG | 2 cut(s) | 627, 971 |
| BseDI | CCNNGG | 3 cut(s) | 207, 626, 969 |
| BseGI | GGATG | 3 cut(s) | 55, 343, 756 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BseMI | GCAATG | 1 cut(s) | 468 |
| BseMII | CTCAG | 1 cut(s) | 669 |
| BseNI | ACTGG | 1 cut(s) | 463 |
| BseRI | GAGGAG | 2 cut(s) | 101, 961 |
| BseSI | GKGCMC | 1 cut(s) | 1032 |
| BseXI | GCAGC | 1 cut(s) | 630 |
| Bsh1236I | CGCG | 2 cut(s) | 61, 80 |
| BshFI | GGCC | 3 cut(s) | 166, 281, 590 |
| BshNI | GGYRCC | 2 cut(s) | 289, 486 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1032 |
| BsiSI | CCGG | 1 cut(s) | 689 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 695 |
| BsmI | GAATGC | 2 cut(s) | 341, 840 |
| BsnI | GGCC | 3 cut(s) | 166, 281, 590 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1032 |
| Bsp13I | TCCGGA | 1 cut(s) | 688 |
| Bsp143I | GATC | 4 cut(s) | 13, 661, 685, 982 |
| BspACI | CCGC | 3 cut(s) | 78, 719, 870 |
| BspANI | GGCC | 3 cut(s) | 166, 281, 590 |
| BspCNI | CTCAG | 1 cut(s) | 668 |
| BspEI | TCCGGA | 1 cut(s) | 688 |
| BspFNI | CGCG | 2 cut(s) | 61, 80 |
| BspHI | TCATGA | 1 cut(s) | 1037 |
| BspLI | GGNNCC | 5 cut(s) | 15, 291, 378, 488, 717 |
| BspMAI | CTGCAG | 1 cut(s) | 193 |
| BspOI | GCTAGC | 1 cut(s) | 840 |
| BspPI | GGATC | 3 cut(s) | 8, 21, 680 |
| BspT107I | GGYRCC | 2 cut(s) | 289, 486 |
| BsrDI | GCAATG | 1 cut(s) | 468 |
| BsrI | ACTGG | 1 cut(s) | 463 |
| BssECI | CCNNGG | 3 cut(s) | 207, 626, 969 |
| BssMI | GATC | 4 cut(s) | 13, 661, 685, 982 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst2UI | CCWGG | 2 cut(s) | 627, 971 |
| Bst4CI | ACNGT | 2 cut(s) | 133, 583 |
| Bst6I | CTCTTC | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 4 cut(s) | 141, 303, 442, 838 |
| BstDEI | CTNAG | 1 cut(s) | 655 |
| BstF5I | GGATG | 3 cut(s) | 55, 343, 756 |
| BstFNI | CGCG | 2 cut(s) | 61, 80 |
| BstHHI | GCGC | 2 cut(s) | 61, 82 |
| BstKTI | GATC | 4 cut(s) | 16, 664, 688, 985 |
| BstMBI | GATC | 4 cut(s) | 13, 661, 685, 982 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 287 |
| BstNI | CCWGG | 2 cut(s) | 627, 971 |
| BstNSI | RCATGY | 1 cut(s) | 922 |
| BstSCI | CCNGG | 2 cut(s) | 625, 969 |
| BstSFI | CTRYAG | 1 cut(s) | 189 |
| BstSLI | GKGCMC | 1 cut(s) | 1032 |
| BstUI | CGCG | 2 cut(s) | 61, 80 |
| BstV1I | GCAGC | 1 cut(s) | 630 |
| BstX2I | RGATCY | 1 cut(s) | 13 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 999 |
| BstYI | RGATCY | 1 cut(s) | 13 |
| BsuI | GTATCC | 1 cut(s) | 757 |
| BsuRI | GGCC | 3 cut(s) | 166, 281, 590 |
| BtsCI | GGATG | 3 cut(s) | 55, 343, 756 |
| BtsIMutI | CAGTG | 1 cut(s) | 138 |
| Cac8I | GCNNGC | 4 cut(s) | 141, 303, 442, 838 |
| CciI | TCATGA | 1 cut(s) | 1037 |
| CfoI | GCGC | 2 cut(s) | 61, 82 |
| Cfr13I | GGNCC | 2 cut(s) | 589, 715 |
| CseI | GACGC | 1 cut(s) | 738 |
| Csp6I | GTAC | 2 cut(s) | 487, 874 |
| CviQI | GTAC | 2 cut(s) | 487, 874 |
| DdeI | CTNAG | 1 cut(s) | 655 |
| DpnI | GATC | 4 cut(s) | 15, 663, 687, 984 |
| DpnII | GATC | 4 cut(s) | 13, 661, 685, 982 |
| EaeI | YGGCCR | 1 cut(s) | 279 |
| Eam1104I | CTCTTC | 1 cut(s) | 246 |
| EarI | CTCTTC | 1 cut(s) | 246 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco32I | GATATC | 1 cut(s) | 901 |
| Eco47I | GGWCC | 1 cut(s) | 715 |
| Eco57I | CTGAAG | 1 cut(s) | 402 |
| EcoRII | CCWGG | 2 cut(s) | 625, 969 |
| EcoRV | GATATC | 1 cut(s) | 901 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| EcoT22I | ATGCAT | 1 cut(s) | 343 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 594, 626 |
| FauI | CCCGC | 2 cut(s) | 726, 863 |
| FbaI | TGATCA | 2 cut(s) | 661, 982 |
| Fnu4HI | GCNGC | 2 cut(s) | 78, 644 |
| FokI | GGATG | 3 cut(s) | 62, 350, 763 |
| Fsp4HI | GCNGC | 2 cut(s) | 78, 644 |
| FspBI | CTAG | 4 cut(s) | 44, 176, 837, 855 |
| GlaI | GCGC | 2 cut(s) | 60, 81 |
| GluI | GCNGC | 2 cut(s) | 78, 644 |
| HaeIII | GGCC | 3 cut(s) | 166, 281, 590 |
| HapII | CCGG | 1 cut(s) | 689 |
| HgaI | GACGC | 1 cut(s) | 738 |
| HhaI | GCGC | 2 cut(s) | 61, 82 |
| Hin6I | GCGC | 2 cut(s) | 59, 80 |
| HinP1I | GCGC | 2 cut(s) | 59, 80 |
| HincII | GTYRAC | 3 cut(s) | 541, 675, 1018 |
| HindII | GTYRAC | 3 cut(s) | 541, 675, 1018 |
| HinfI | GANTC | 1 cut(s) | 257 |
| HpaII | CCGG | 1 cut(s) | 689 |
| HphI | GGTGA | 2 cut(s) | 344, 671 |
| Hpy166II | GTNNAC | 4 cut(s) | 541, 675, 1018, 1030 |
| Hpy188I | TCNGA | 4 cut(s) | 262, 483, 790, 810 |
| Hpy188III | TCNNGA | 3 cut(s) | 196, 689, 1038 |
| Hpy8I | GTNNAC | 4 cut(s) | 541, 675, 1018, 1030 |
| HpyAV | CCTTC | 4 cut(s) | 27, 499, 555, 942 |
| HpyCH4III | ACNGT | 2 cut(s) | 133, 583 |
| HpyCH4IV | ACGT | 1 cut(s) | 759 |
| HpyCH4V | TGCA | 5 cut(s) | 191, 341, 440, 468, 1030 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 287 |
| HpyF3I | CTNAG | 1 cut(s) | 655 |
| HpySE526I | ACGT | 1 cut(s) | 759 |
| HspAI | GCGC | 2 cut(s) | 59, 80 |
| Kpn2I | TCCGGA | 1 cut(s) | 688 |
| KpnI | GGTACC | 1 cut(s) | 490 |
| Ksp22I | TGATCA | 2 cut(s) | 661, 982 |
| Kzo9I | GATC | 4 cut(s) | 13, 661, 685, 982 |
| LmnI | GCTCC | 1 cut(s) | 376 |
| Lsp1109I | GCAGC | 1 cut(s) | 630 |
| LweI | GCATC | 1 cut(s) | 328 |
| MaeI | CTAG | 4 cut(s) | 44, 176, 837, 855 |
| MaeII | ACGT | 1 cut(s) | 759 |
| MaeIII | GTNAC | 2 cut(s) | 454, 613 |
| MalI | GATC | 4 cut(s) | 15, 663, 687, 984 |
| MboI | GATC | 4 cut(s) | 13, 661, 685, 982 |
| MboII | GAAGA | 4 cut(s) | 238, 241, 263, 325 |
| MflI | RGATCY | 1 cut(s) | 13 |
| MhlI | GDGCHC | 1 cut(s) | 1032 |
| MlsI | TGGCCA | 1 cut(s) | 281 |
| MluCI | AATT | 4 cut(s) | 123, 269, 284, 828 |
| MluNI | TGGCCA | 1 cut(s) | 281 |
| MlyI | GAGTC | 1 cut(s) | 251 |
| MmeI | TCCRAC | 2 cut(s) | 501, 788 |
| Mox20I | TGGCCA | 1 cut(s) | 281 |
| Mph1103I | ATGCAT | 1 cut(s) | 343 |
| MroI | TCCGGA | 1 cut(s) | 688 |
| MscI | TGGCCA | 1 cut(s) | 281 |
| MslI | CAYNNNNRTG | 2 cut(s) | 473, 1025 |
| Msp20I | TGGCCA | 1 cut(s) | 281 |
| MspA1I | CMGCKG | 1 cut(s) | 721 |
| MspI | CCGG | 1 cut(s) | 689 |
| MspR9I | CCNGG | 2 cut(s) | 627, 971 |
| Mva1269I | GAATGC | 2 cut(s) | 341, 840 |
| MvaI | CCWGG | 2 cut(s) | 627, 971 |
| MvnI | CGCG | 2 cut(s) | 61, 80 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 287 |
| NdeII | GATC | 4 cut(s) | 13, 661, 685, 982 |
| NheI | GCTAGC | 1 cut(s) | 836 |
| NlaIV | GGNNCC | 5 cut(s) | 15, 291, 378, 488, 717 |
| NsiI | ATGCAT | 1 cut(s) | 343 |
| NspI | RCATGY | 1 cut(s) | 922 |
| OliI | CACNNNNGTG | 1 cut(s) | 1025 |
| PagI | TCATGA | 1 cut(s) | 1037 |
| PciI | ACATGT | 1 cut(s) | 918 |
| PctI | GAATGC | 2 cut(s) | 341, 840 |
| PkrI | GCNGC | 2 cut(s) | 79, 645 |
| PleI | GAGTC | 1 cut(s) | 251 |
| PpsI | GAGTC | 1 cut(s) | 251 |
| PscI | ACATGT | 1 cut(s) | 918 |
| PsiI | TTATAA | 1 cut(s) | 513 |
| Psp6I | CCWGG | 2 cut(s) | 625, 969 |
| PspGI | CCWGG | 2 cut(s) | 625, 969 |
| PspN4I | GGNNCC | 5 cut(s) | 15, 291, 378, 488, 717 |
| PspPI | GGNCC | 2 cut(s) | 589, 715 |
| PstI | CTGCAG | 1 cut(s) | 193 |
| PsuI | RGATCY | 1 cut(s) | 13 |
| RsaI | GTAC | 2 cut(s) | 488, 875 |
| RsaNI | GTAC | 2 cut(s) | 487, 874 |
| RseI | CAYNNNNRTG | 2 cut(s) | 473, 1025 |
| SatI | GCNGC | 2 cut(s) | 78, 644 |
| Sau3AI | GATC | 4 cut(s) | 13, 661, 685, 982 |
| Sau96I | GGNCC | 2 cut(s) | 589, 715 |
| SchI | GAGTC | 1 cut(s) | 251 |
| ScrFI | CCNGG | 2 cut(s) | 627, 971 |
| SduI | GDGCHC | 1 cut(s) | 1032 |
| SetI | ASST | 9 cut(s) | 177, 205, 220, 307, 488, 492, 661, 762, 856 |
| SfaNI | GCATC | 1 cut(s) | 328 |
| SfcI | CTRYAG | 1 cut(s) | 189 |
| SinI | GGWCC | 1 cut(s) | 715 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 473, 1025 |
| SmlI | CTYRAG | 1 cut(s) | 83 |
| SmoI | CTYRAG | 1 cut(s) | 83 |
| Sse9I | AATT | 4 cut(s) | 123, 269, 284, 828 |
| SsiI | CCGC | 3 cut(s) | 78, 719, 870 |
| SspMI | CTAG | 4 cut(s) | 44, 176, 837, 855 |
| StyD4I | CCNGG | 2 cut(s) | 625, 969 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 2 cut(s) | 133, 583 |
| TaiI | ACGT | 1 cut(s) | 762 |
| TasI | AATT | 4 cut(s) | 123, 269, 284, 828 |
| TauI | GCSGC | 1 cut(s) | 80 |
| TscAI | CASTG | 1 cut(s) | 138 |
| TseI | GCWGC | 1 cut(s) | 643 |
| TspDTI | ATGAA | 5 cut(s) | 20, 135, 251, 297, 628 |
| TspRI | CASTG | 1 cut(s) | 138 |
| VneI | GTGCAC | 1 cut(s) | 1028 |
| VpaK11BI | GGWCC | 1 cut(s) | 715 |
| XapI | RAATTY | 2 cut(s) | 269, 828 |
| XceI | RCATGY | 1 cut(s) | 922 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 29 |
| XspI | CTAG | 4 cut(s) | 44, 176, 837, 855 |
| Zsp2I | ATGCAT | 1 cut(s) | 343 |