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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 222 |
| AccBSI | CCGCTC | 2 cut(s) | 46, 880 |
| AccI | GTMKAC | 1 cut(s) | 1121 |
| AccII | CGCG | 1 cut(s) | 934 |
| AciI | CCGC | 6 cut(s) | 44, 278, 851, 880, 934, 1049 |
| AclWI | GGATC | 2 cut(s) | 676, 824 |
| AcoI | YGGCCR | 1 cut(s) | 326 |
| AcsI | RAATTY | 3 cut(s) | 187, 866, 1064 |
| AcuI | CTGAAG | 1 cut(s) | 582 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 33, 84, 167, 211, 264, 375 |
| AflIII | ACRYGT | 1 cut(s) | 728 |
| AgsI | TTSAA | 8 cut(s) | 8, 21, 241, 440, 776, 787, 815, 1036 |
| AjiI | CACGTC | 1 cut(s) | 731 |
| AjnI | CCWGG | 3 cut(s) | 316, 467, 1124 |
| Alw26I | GTCTC | 5 cut(s) | 79, 153, 221, 576, 727 |
| AlwI | GGATC | 2 cut(s) | 676, 824 |
| AoxI | GGCC | 2 cut(s) | 314, 326 |
| ApeKI | GCWGC | 6 cut(s) | 608, 752, 920, 983, 986, 1046 |
| ApoI | RAATTY | 3 cut(s) | 187, 866, 1064 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 429, 810 |
| AspA2I | CCTAGG | 1 cut(s) | 734 |
| AspLEI | GCGC | 4 cut(s) | 223, 592, 934, 1008 |
| AsuHPI | GGTGA | 2 cut(s) | 183, 1082 |
| AsuNHI | GCTAGC | 1 cut(s) | 956 |
| AvrII | CCTAGG | 1 cut(s) | 734 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 273, 306 |
| BalI | TGGCCA | 1 cut(s) | 328 |
| BbsI | GAAGAC | 2 cut(s) | 447, 627 |
| BbvI | GCAGC | 6 cut(s) | 595, 739, 907, 973, 995, 1033 |
| BccI | CCATC | 2 cut(s) | 382, 706 |
| BciT130I | CCWGG | 3 cut(s) | 318, 469, 1126 |
| BciVI | GTATCC | 1 cut(s) | 274 |
| BcoDI | GTCTC | 5 cut(s) | 79, 153, 221, 576, 727 |
| BfaI | CTAG | 3 cut(s) | 404, 735, 957 |
| BfmI | CTRYAG | 3 cut(s) | 114, 753, 987 |
| BfoI | RGCGCY | 1 cut(s) | 1009 |
| BfuI | GTATCC | 1 cut(s) | 274 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 473 |
| BisI | GCNGC | 7 cut(s) | 609, 753, 852, 921, 984, 987, 1047 |
| BlnI | CCTAGG | 1 cut(s) | 734 |
| BlsI | GCNGC | 7 cut(s) | 610, 754, 853, 922, 985, 988, 1048 |
| Bme1390I | CCNGG | 3 cut(s) | 318, 469, 1126 |
| BmgBI | CACGTC | 1 cut(s) | 731 |
| BmrFI | CCNGG | 3 cut(s) | 318, 469, 1126 |
| BmsI | GCATC | 3 cut(s) | 684, 919, 973 |
| BmtI | GCTAGC | 1 cut(s) | 960 |
| BpiI | GAAGAC | 2 cut(s) | 447, 627 |
| BpmI | CTGGAG | 2 cut(s) | 61, 1112 |
| Bpu10I | CCTNAGC | 1 cut(s) | 876 |
| BpuEI | CTTGAG | 2 cut(s) | 476, 767 |
| BsaI | GGTCTC | 2 cut(s) | 576, 727 |
| BsaJI | CCNNGG | 3 cut(s) | 161, 734, 1125 |
| BsaWI | WCCGGW | 1 cut(s) | 331 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 48, 78, 304, 334 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 33, 84, 167, 211, 264, 375 |
| Bse1I | ACTGG | 2 cut(s) | 304, 1095 |
| Bse3DI | GCAATG | 1 cut(s) | 216 |
| BseBI | CCWGG | 3 cut(s) | 318, 469, 1126 |
| BseDI | CCNNGG | 3 cut(s) | 161, 734, 1125 |
| BseGI | GGATG | 5 cut(s) | 76, 393, 942, 964, 1018 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 33, 84, 167, 211, 264, 375 |
| BseMI | GCAATG | 1 cut(s) | 216 |
| BseMII | CTCAG | 1 cut(s) | 867 |
| BseNI | ACTGG | 2 cut(s) | 304, 1095 |
| BseRI | GAGGAG | 4 cut(s) | 100, 141, 492, 1109 |
| BseXI | GCAGC | 6 cut(s) | 595, 739, 907, 973, 995, 1033 |
| BseYI | CCCAGC | 3 cut(s) | 166, 508, 586 |
| BsgI | GTGCAG | 1 cut(s) | 822 |
| Bsh1236I | CGCG | 1 cut(s) | 934 |
| BshFI | GGCC | 2 cut(s) | 316, 328 |
| BsiSI | CCGG | 2 cut(s) | 54, 332 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 33, 84, 167, 211, 264, 375 |
| BsmAI | GTCTC | 5 cut(s) | 79, 153, 221, 576, 727 |
| BsmI | GAATGC | 1 cut(s) | 252 |
| BsnI | GGCC | 2 cut(s) | 316, 328 |
| Bso31I | GGTCTC | 2 cut(s) | 576, 727 |
| Bsp143I | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| BspACI | CCGC | 6 cut(s) | 44, 278, 851, 880, 934, 1049 |
| BspANI | GGCC | 2 cut(s) | 316, 328 |
| BspCNI | CTCAG | 1 cut(s) | 868 |
| BspFNI | CGCG | 1 cut(s) | 934 |
| BspMAI | CTGCAG | 2 cut(s) | 757, 991 |
| BspOI | GCTAGC | 1 cut(s) | 960 |
| BspPI | GGATC | 2 cut(s) | 676, 824 |
| BspQI | GCTCTTC | 1 cut(s) | 1068 |
| BspTNI | GGTCTC | 2 cut(s) | 576, 727 |
| BsrBI | CCGCTC | 2 cut(s) | 46, 880 |
| BsrDI | GCAATG | 1 cut(s) | 216 |
| BsrI | ACTGG | 2 cut(s) | 304, 1095 |
| BssECI | CCNNGG | 3 cut(s) | 161, 734, 1125 |
| BssMI | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| BssT1I | CCWWGG | 1 cut(s) | 734 |
| Bst2UI | CCWGG | 3 cut(s) | 318, 469, 1126 |
| Bst4CI | ACNGT | 1 cut(s) | 913 |
| Bst6I | CTCTTC | 1 cut(s) | 1068 |
| BstC8I | GCNNGC | 8 cut(s) | 219, 465, 474, 552, 663, 958, 962, 981 |
| BstDEI | CTNAG | 2 cut(s) | 521, 876 |
| BstF5I | GGATG | 5 cut(s) | 76, 393, 942, 964, 1018 |
| BstFNI | CGCG | 1 cut(s) | 934 |
| BstH2I | RGCGCY | 1 cut(s) | 1009 |
| BstHHI | GCGC | 4 cut(s) | 223, 592, 934, 1008 |
| BstKTI | GATC | 6 cut(s) | 178, 198, 295, 310, 671, 832 |
| BstMAI | GTCTC | 5 cut(s) | 79, 153, 221, 576, 727 |
| BstMBI | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 43, 469, 473, 929 |
| BstNI | CCWGG | 3 cut(s) | 318, 469, 1126 |
| BstNSI | RCATGY | 1 cut(s) | 1137 |
| BstSCI | CCNGG | 3 cut(s) | 316, 467, 1124 |
| BstSFI | CTRYAG | 3 cut(s) | 114, 753, 987 |
| BstUI | CGCG | 1 cut(s) | 934 |
| BstV1I | GCAGC | 6 cut(s) | 595, 739, 907, 973, 995, 1033 |
| BstV2I | GAAGAC | 2 cut(s) | 447, 627 |
| BsuI | GTATCC | 1 cut(s) | 274 |
| BsuRI | GGCC | 2 cut(s) | 316, 328 |
| BtrI | CACGTC | 1 cut(s) | 731 |
| BtsCI | GGATG | 5 cut(s) | 76, 393, 942, 964, 1018 |
| BtsIMutI | CAGTG | 1 cut(s) | 918 |
| Cac8I | GCNNGC | 8 cut(s) | 219, 465, 474, 552, 663, 958, 962, 981 |
| CfoI | GCGC | 4 cut(s) | 223, 592, 934, 1008 |
| CviAII | CATG | 3 cut(s) | 224, 926, 1134 |
| DdeI | CTNAG | 2 cut(s) | 521, 876 |
| DpnI | GATC | 6 cut(s) | 177, 197, 294, 309, 670, 831 |
| DpnII | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| EaeI | YGGCCR | 1 cut(s) | 326 |
| Eam1104I | CTCTTC | 1 cut(s) | 1068 |
| EarI | CTCTTC | 1 cut(s) | 1068 |
| Eco130I | CCWWGG | 1 cut(s) | 734 |
| Eco147I | AGGCCT | 1 cut(s) | 316 |
| Eco31I | GGTCTC | 2 cut(s) | 576, 727 |
| Eco32I | GATATC | 1 cut(s) | 349 |
| Eco57I | CTGAAG | 1 cut(s) | 582 |
| EcoRII | CCWGG | 3 cut(s) | 316, 467, 1124 |
| EcoRV | GATATC | 1 cut(s) | 349 |
| EcoT14I | CCWWGG | 1 cut(s) | 734 |
| EcoT22I | ATGCAT | 1 cut(s) | 699 |
| ErhI | CCWWGG | 1 cut(s) | 734 |
| FaeI | CATG | 3 cut(s) | 227, 929, 1137 |
| FatI | CATG | 3 cut(s) | 223, 925, 1133 |
| FblI | GTMKAC | 1 cut(s) | 1121 |
| Fnu4HI | GCNGC | 7 cut(s) | 609, 753, 852, 921, 984, 987, 1047 |
| FokI | GGATG | 5 cut(s) | 83, 400, 949, 951, 1025 |
| Fsp4HI | GCNGC | 7 cut(s) | 609, 753, 852, 921, 984, 987, 1047 |
| FspBI | CTAG | 3 cut(s) | 404, 735, 957 |
| FspI | TGCGCA | 1 cut(s) | 222 |
| GlaI | GCGC | 4 cut(s) | 222, 591, 933, 1007 |
| GluI | GCNGC | 7 cut(s) | 609, 753, 852, 921, 984, 987, 1047 |
| GsaI | CCCAGC | 3 cut(s) | 170, 512, 590 |
| GsuI | CTGGAG | 2 cut(s) | 61, 1112 |
| HaeII | RGCGCY | 1 cut(s) | 1009 |
| HaeIII | GGCC | 2 cut(s) | 316, 328 |
| HapII | CCGG | 2 cut(s) | 54, 332 |
| HhaI | GCGC | 4 cut(s) | 223, 592, 934, 1008 |
| Hin1II | CATG | 3 cut(s) | 227, 929, 1137 |
| Hin6I | GCGC | 4 cut(s) | 221, 590, 932, 1006 |
| HinP1I | GCGC | 4 cut(s) | 221, 590, 932, 1006 |
| HindIII | AAGCTT | 1 cut(s) | 633 |
| HinfI | GANTC | 2 cut(s) | 8, 1055 |
| HpaII | CCGG | 2 cut(s) | 54, 332 |
| HphI | GGTGA | 2 cut(s) | 183, 1082 |
| Hpy166II | GTNNAC | 1 cut(s) | 1122 |
| Hpy188I | TCNGA | 4 cut(s) | 312, 435, 562, 615 |
| Hpy188III | TCNNGA | 4 cut(s) | 579, 672, 746, 833 |
| Hpy8I | GTNNAC | 1 cut(s) | 1122 |
| HpyAV | CCTTC | 7 cut(s) | 129, 363, 419, 485, 527, 527, 610 |
| HpyCH4III | ACNGT | 1 cut(s) | 913 |
| HpyCH4IV | ACGT | 1 cut(s) | 730 |
| HpyCH4V | TGCA | 8 cut(s) | 209, 640, 697, 755, 803, 885, 983, 989 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 43, 469, 473, 929 |
| HpyF3I | CTNAG | 2 cut(s) | 521, 876 |
| HpySE526I | ACGT | 1 cut(s) | 730 |
| Hsp92II | CATG | 3 cut(s) | 227, 929, 1137 |
| HspAI | GCGC | 4 cut(s) | 221, 590, 932, 1006 |
| Kzo9I | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| LguI | GCTCTTC | 1 cut(s) | 1068 |
| LmnI | GCTCC | 2 cut(s) | 56, 214 |
| Lsp1109I | GCAGC | 6 cut(s) | 595, 739, 907, 973, 995, 1033 |
| LweI | GCATC | 3 cut(s) | 684, 919, 973 |
| MaeI | CTAG | 3 cut(s) | 404, 735, 957 |
| MaeII | ACGT | 1 cut(s) | 730 |
| MaeIII | GTNAC | 1 cut(s) | 896 |
| MalI | GATC | 6 cut(s) | 177, 197, 294, 309, 670, 831 |
| MbiI | CCGCTC | 2 cut(s) | 46, 880 |
| MboI | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| MlsI | TGGCCA | 1 cut(s) | 328 |
| MluCI | AATT | 5 cut(s) | 187, 268, 866, 1064, 1144 |
| MluNI | TGGCCA | 1 cut(s) | 328 |
| MmeI | TCCRAC | 1 cut(s) | 1065 |
| Mox20I | TGGCCA | 1 cut(s) | 328 |
| Mph1103I | ATGCAT | 1 cut(s) | 699 |
| MroXI | GAANNNNTTC | 2 cut(s) | 429, 810 |
| MscI | TGGCCA | 1 cut(s) | 328 |
| MseI | TTAA | 1 cut(s) | 66 |
| Msp20I | TGGCCA | 1 cut(s) | 328 |
| MspA1I | CMGCKG | 2 cut(s) | 986, 1061 |
| MspI | CCGG | 2 cut(s) | 54, 332 |
| MspR9I | CCNGG | 3 cut(s) | 318, 469, 1126 |
| Mva1269I | GAATGC | 1 cut(s) | 252 |
| MvaI | CCWGG | 3 cut(s) | 318, 469, 1126 |
| MvnI | CGCG | 1 cut(s) | 934 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 43, 469, 473, 929 |
| NdeII | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| NheI | GCTAGC | 1 cut(s) | 956 |
| NlaIII | CATG | 3 cut(s) | 227, 929, 1137 |
| NmeAIII | GCCGAG | 1 cut(s) | 186 |
| NsbI | TGCGCA | 1 cut(s) | 222 |
| NsiI | ATGCAT | 1 cut(s) | 699 |
| NspI | RCATGY | 1 cut(s) | 1137 |
| PceI | AGGCCT | 1 cut(s) | 316 |
| PciSI | GCTCTTC | 1 cut(s) | 1068 |
| PctI | GAATGC | 1 cut(s) | 252 |
| PdmI | GAANNNNTTC | 2 cut(s) | 429, 810 |
| PfeI | GAWTC | 2 cut(s) | 8, 1055 |
| PkrI | GCNGC | 7 cut(s) | 610, 754, 853, 922, 985, 988, 1048 |
| Psp6I | CCWGG | 3 cut(s) | 316, 467, 1124 |
| PspFI | CCCAGC | 3 cut(s) | 166, 508, 586 |
| PspGI | CCWGG | 3 cut(s) | 316, 467, 1124 |
| PstI | CTGCAG | 2 cut(s) | 757, 991 |
| PvuII | CAGCTG | 2 cut(s) | 986, 1061 |
| SapI | GCTCTTC | 1 cut(s) | 1068 |
| SaqAI | TTAA | 1 cut(s) | 66 |
| SatI | GCNGC | 7 cut(s) | 609, 753, 852, 921, 984, 987, 1047 |
| Sau3AI | GATC | 6 cut(s) | 175, 195, 292, 307, 668, 829 |
| ScrFI | CCNGG | 3 cut(s) | 318, 469, 1126 |
| SfaNI | GCATC | 3 cut(s) | 684, 919, 973 |
| SfcI | CTRYAG | 3 cut(s) | 114, 753, 987 |
| SmlI | CTYRAG | 2 cut(s) | 455, 746 |
| SmoI | CTYRAG | 2 cut(s) | 455, 746 |
| Sse9I | AATT | 5 cut(s) | 187, 268, 866, 1064, 1144 |
| SseBI | AGGCCT | 1 cut(s) | 316 |
| SsiI | CCGC | 6 cut(s) | 44, 278, 851, 880, 934, 1049 |
| SspMI | CTAG | 3 cut(s) | 404, 735, 957 |
| StuI | AGGCCT | 1 cut(s) | 316 |
| StyD4I | CCNGG | 3 cut(s) | 316, 467, 1124 |
| StyI | CCWWGG | 1 cut(s) | 734 |
| TaaI | ACNGT | 1 cut(s) | 913 |
| TaiI | ACGT | 1 cut(s) | 733 |
| TaqI | TCGA | 2 cut(s) | 133, 417 |
| TasI | AATT | 5 cut(s) | 187, 268, 866, 1064, 1144 |
| TauI | GCSGC | 1 cut(s) | 854 |
| TfiI | GAWTC | 2 cut(s) | 8, 1055 |
| Tru1I | TTAA | 1 cut(s) | 66 |
| Tru9I | TTAA | 1 cut(s) | 66 |
| TscAI | CASTG | 1 cut(s) | 918 |
| TseI | GCWGC | 6 cut(s) | 608, 752, 920, 983, 986, 1046 |
| TspDTI | ATGAA | 4 cut(s) | 225, 554, 859, 953 |
| TspGWI | ACGGA | 2 cut(s) | 400, 1107 |
| TspRI | CASTG | 1 cut(s) | 918 |
| XapI | RAATTY | 3 cut(s) | 187, 866, 1064 |
| XceI | RCATGY | 1 cut(s) | 1137 |
| XmaJI | CCTAGG | 1 cut(s) | 734 |
| XmiI | GTMKAC | 1 cut(s) | 1121 |
| XmnI | GAANNNNTTC | 2 cut(s) | 429, 810 |
| XspI | CTAG | 3 cut(s) | 404, 735, 957 |
| Zsp2I | ATGCAT | 1 cut(s) | 699 |