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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 315 |
| AclWI | GGATC | 3 cut(s) | 92, 185, 198 |
| AflIII | ACRYGT | 1 cut(s) | 205 |
| AgsI | TTSAA | 1 cut(s) | 199 |
| AjiI | CACGTC | 1 cut(s) | 206 |
| AjnI | CCWGG | 1 cut(s) | 130 |
| AluBI | AGCT | 3 cut(s) | 72, 364, 452 |
| AluI | AGCT | 3 cut(s) | 72, 364, 452 |
| Alw21I | GWGCWC | 1 cut(s) | 465 |
| AlwI | GGATC | 3 cut(s) | 92, 185, 198 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| Bbv12I | GWGCWC | 1 cut(s) | 465 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BccI | CCATC | 1 cut(s) | 28 |
| BciT130I | CCWGG | 1 cut(s) | 132 |
| BfaI | CTAG | 1 cut(s) | 390 |
| BisI | GCNGC | 2 cut(s) | 119, 316 |
| BlsI | GCNGC | 2 cut(s) | 120, 317 |
| Bme1390I | CCNGG | 1 cut(s) | 132 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgBI | CACGTC | 1 cut(s) | 206 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 192 |
| BmrFI | CCNGG | 1 cut(s) | 132 |
| BmrI | ACTGGG | 1 cut(s) | 405 |
| BmuI | ACTGGG | 1 cut(s) | 405 |
| BpuEI | CTTGAG | 1 cut(s) | 449 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 82, 112 |
| Bse1I | ACTGG | 1 cut(s) | 400 |
| BseBI | CCWGG | 1 cut(s) | 132 |
| BseNI | ACTGG | 1 cut(s) | 400 |
| BseRI | GAGGAG | 1 cut(s) | 458 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| BsiHKAI | GWGCWC | 1 cut(s) | 465 |
| Bsp1286I | GDGCHC | 1 cut(s) | 465 |
| Bsp143I | GATC | 4 cut(s) | 79, 84, 174, 190 |
| BspACI | CCGC | 1 cut(s) | 315 |
| BspLI | GGNNCC | 1 cut(s) | 192 |
| BspPI | GGATC | 3 cut(s) | 92, 185, 198 |
| BsrI | ACTGG | 1 cut(s) | 400 |
| BssMI | GATC | 4 cut(s) | 79, 84, 174, 190 |
| Bst2UI | CCWGG | 1 cut(s) | 132 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstC8I | GCNNGC | 1 cut(s) | 366 |
| BstKTI | GATC | 4 cut(s) | 82, 87, 177, 193 |
| BstMBI | GATC | 4 cut(s) | 79, 84, 174, 190 |
| BstNI | CCWGG | 1 cut(s) | 132 |
| BstSCI | CCNGG | 1 cut(s) | 130 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| BtrI | CACGTC | 1 cut(s) | 206 |
| Cac8I | GCNNGC | 1 cut(s) | 366 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| CviAII | CATG | 3 cut(s) | 312, 337, 472 |
| CviJI | RGCY | 6 cut(s) | 72, 253, 265, 364, 386, 452 |
| CviKI_1 | RGCY | 6 cut(s) | 72, 253, 265, 364, 386, 452 |
| DpnI | GATC | 4 cut(s) | 81, 86, 176, 192 |
| DpnII | GATC | 4 cut(s) | 79, 84, 174, 190 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| EcoRII | CCWGG | 1 cut(s) | 130 |
| FaeI | CATG | 3 cut(s) | 315, 340, 475 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 253, 285 |
| FatI | CATG | 3 cut(s) | 311, 336, 471 |
| FauNDI | CATATG | 1 cut(s) | 186 |
| Fnu4HI | GCNGC | 2 cut(s) | 119, 316 |
| Fsp4HI | GCNGC | 2 cut(s) | 119, 316 |
| FspBI | CTAG | 1 cut(s) | 390 |
| GluI | GCNGC | 2 cut(s) | 119, 316 |
| Hin1II | CATG | 3 cut(s) | 315, 340, 475 |
| HincII | GTYRAC | 2 cut(s) | 16, 150 |
| HindII | GTYRAC | 2 cut(s) | 16, 150 |
| HindIII | AAGCTT | 1 cut(s) | 70 |
| HinfI | GANTC | 2 cut(s) | 161, 285 |
| HpaI | GTTAAC | 1 cut(s) | 150 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 150, 238 |
| Hpy188I | TCNGA | 3 cut(s) | 84, 108, 166 |
| Hpy188III | TCNNGA | 3 cut(s) | 216, 424, 466 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 150, 238 |
| HpyAV | CCTTC | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4IV | ACGT | 1 cut(s) | 205 |
| HpyCH4V | TGCA | 1 cut(s) | 53 |
| HpySE526I | ACGT | 1 cut(s) | 205 |
| Hsp92II | CATG | 3 cut(s) | 315, 340, 475 |
| KspAI | GTTAAC | 1 cut(s) | 150 |
| Kzo9I | GATC | 4 cut(s) | 79, 84, 174, 190 |
| LpnPI | CCDG | 6 cut(s) | 117, 144, 201, 350, 381, 438 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| MaeI | CTAG | 1 cut(s) | 390 |
| MaeII | ACGT | 1 cut(s) | 205 |
| MalI | GATC | 4 cut(s) | 81, 86, 176, 192 |
| MboI | GATC | 4 cut(s) | 79, 84, 174, 190 |
| MboII | GAAGA | 1 cut(s) | 68 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MhlI | GDGCHC | 1 cut(s) | 465 |
| MluCI | AATT | 2 cut(s) | 231, 319 |
| MnlI | CCTC | 5 cut(s) | 54, 243, 333, 427, 436 |
| MseI | TTAA | 4 cut(s) | 74, 149, 353, 481 |
| MspR9I | CCNGG | 1 cut(s) | 132 |
| MvaI | CCWGG | 1 cut(s) | 132 |
| NdeI | CATATG | 1 cut(s) | 186 |
| NdeII | GATC | 4 cut(s) | 79, 84, 174, 190 |
| NlaIII | CATG | 3 cut(s) | 315, 340, 475 |
| NlaIV | GGNNCC | 1 cut(s) | 192 |
| PfeI | GAWTC | 2 cut(s) | 161, 285 |
| PkrI | GCNGC | 2 cut(s) | 120, 317 |
| Psp6I | CCWGG | 1 cut(s) | 130 |
| PspGI | CCWGG | 1 cut(s) | 130 |
| PspN4I | GGNNCC | 1 cut(s) | 192 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| SaqAI | TTAA | 4 cut(s) | 74, 149, 353, 481 |
| SatI | GCNGC | 2 cut(s) | 119, 316 |
| Sau3AI | GATC | 4 cut(s) | 79, 84, 174, 190 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| ScrFI | CCNGG | 1 cut(s) | 132 |
| SduI | GDGCHC | 1 cut(s) | 465 |
| SetI | ASST | 6 cut(s) | 74, 136, 208, 366, 438, 454 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 464 |
| SmoI | CTYRAG | 1 cut(s) | 464 |
| Sse9I | AATT | 2 cut(s) | 231, 319 |
| SsiI | CCGC | 1 cut(s) | 315 |
| SspMI | CTAG | 1 cut(s) | 390 |
| StyD4I | CCNGG | 1 cut(s) | 130 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaiI | ACGT | 1 cut(s) | 208 |
| TasI | AATT | 2 cut(s) | 231, 319 |
| TauI | GCSGC | 1 cut(s) | 318 |
| TfiI | GAWTC | 2 cut(s) | 161, 285 |
| Tru1I | TTAA | 4 cut(s) | 74, 149, 353, 481 |
| Tru9I | TTAA | 4 cut(s) | 74, 149, 353, 481 |
| TseI | GCWGC | 1 cut(s) | 118 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 138 |
| XspI | CTAG | 1 cut(s) | 390 |