source UniProtKB
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| HLH | PF00010 | 141 - 185 | 2.2e-09 | Helix-loop-helix DNA-binding domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 475 |
| AclWI | GGATC | 3 cut(s) | 128, 254, 640 |
| AcoI | YGGCCR | 1 cut(s) | 774 |
| AcsI | RAATTY | 1 cut(s) | 919 |
| AfaI | GTAC | 3 cut(s) | 244, 534, 543 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 218, 724 |
| AgsI | TTSAA | 8 cut(s) | 596, 800, 817, 831, 838, 880, 925, 965 |
| AjnI | CCWGG | 2 cut(s) | 19, 717 |
| AluBI | AGCT | 6 cut(s) | 146, 266, 571, 578, 944, 978 |
| AluI | AGCT | 6 cut(s) | 146, 266, 571, 578, 944, 978 |
| Alw21I | GWGCWC | 1 cut(s) | 19 |
| Alw44I | GTGCAC | 1 cut(s) | 15 |
| AlwI | GGATC | 3 cut(s) | 128, 254, 640 |
| AoxI | GGCC | 3 cut(s) | 510, 589, 774 |
| ApaLI | GTGCAC | 1 cut(s) | 15 |
| ApeKI | GCWGC | 1 cut(s) | 898 |
| ApoI | RAATTY | 1 cut(s) | 919 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 859, 891 |
| AseI | ATTAAT | 1 cut(s) | 846 |
| AspS9I | GGNCC | 2 cut(s) | 200, 477 |
| AsuC2I | CCSGG | 1 cut(s) | 213 |
| AsuHPI | GGTGA | 1 cut(s) | 946 |
| AsuII | TTCGAA | 1 cut(s) | 861 |
| AvaII | GGWCC | 2 cut(s) | 200, 477 |
| BaeGI | GKGCMC | 1 cut(s) | 19 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 237, 270 |
| BalI | TGGCCA | 1 cut(s) | 776 |
| BauI | CACGAG | 3 cut(s) | 175, 340, 382 |
| Bbv12I | GWGCWC | 1 cut(s) | 19 |
| BbvI | GCAGC | 1 cut(s) | 910 |
| BccI | CCATC | 3 cut(s) | 4, 290, 496 |
| BciT130I | CCWGG | 2 cut(s) | 21, 719 |
| BciVI | GTATCC | 1 cut(s) | 265 |
| BclI | TGATCA | 1 cut(s) | 97 |
| BcnI | CCSGG | 1 cut(s) | 213 |
| BfuI | GTATCC | 1 cut(s) | 265 |
| BglII | AGATCT | 1 cut(s) | 547 |
| BisI | GCNGC | 1 cut(s) | 899 |
| BlsI | GCNGC | 1 cut(s) | 900 |
| BmcAI | AGTACT | 1 cut(s) | 244 |
| Bme1390I | CCNGG | 3 cut(s) | 21, 213, 719 |
| Bme18I | GGWCC | 2 cut(s) | 200, 477 |
| BmgT120I | GGNCC | 2 cut(s) | 200, 477 |
| BmiI | GGNNCC | 1 cut(s) | 486 |
| BmrFI | CCNGG | 3 cut(s) | 21, 213, 719 |
| BmsI | GCATC | 5 cut(s) | 57, 76, 517, 620, 743 |
| BpmI | CTGGAG | 1 cut(s) | 960 |
| Bpu14I | TTCGAA | 1 cut(s) | 861 |
| BpuMI | CCSGG | 1 cut(s) | 213 |
| Bsa29I | ATCGAT | 2 cut(s) | 108, 409 |
| BsaJI | CCNNGG | 5 cut(s) | 420, 480, 690, 717, 955 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 516, 546, 628, 658, 756, 786 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 218, 724 |
| Bse1I | ACTGG | 2 cut(s) | 193, 943 |
| Bse3DI | GCAATG | 1 cut(s) | 470 |
| BseBI | CCWGG | 2 cut(s) | 21, 719 |
| BseCI | ATCGAT | 2 cut(s) | 108, 409 |
| BseDI | CCNNGG | 5 cut(s) | 420, 480, 690, 717, 955 |
| BseGI | GGATG | 4 cut(s) | 10, 15, 456, 758 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 218, 724 |
| BseMI | GCAATG | 1 cut(s) | 470 |
| BseMII | CTCAG | 1 cut(s) | 570 |
| BseNI | ACTGG | 2 cut(s) | 193, 943 |
| BseRI | GAGGAG | 2 cut(s) | 135, 740 |
| BseSI | GKGCMC | 1 cut(s) | 19 |
| BseXI | GCAGC | 1 cut(s) | 910 |
| Bsh1285I | CGRYCG | 1 cut(s) | 413 |
| BshFI | GGCC | 3 cut(s) | 512, 591, 776 |
| BshVI | ATCGAT | 2 cut(s) | 108, 409 |
| BsiEI | CGRYCG | 1 cut(s) | 413 |
| BsiHKAI | GWGCWC | 1 cut(s) | 19 |
| BsiSI | CCGG | 2 cut(s) | 212, 588 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 218, 724 |
| BsnI | GGCC | 3 cut(s) | 512, 591, 776 |
| Bsp119I | TTCGAA | 1 cut(s) | 861 |
| Bsp1286I | GDGCHC | 1 cut(s) | 19 |
| Bsp1407I | TGTACA | 1 cut(s) | 541 |
| BspACI | CCGC | 1 cut(s) | 475 |
| BspANI | GGCC | 3 cut(s) | 512, 591, 776 |
| BspCNI | CTCAG | 1 cut(s) | 571 |
| BspDI | ATCGAT | 2 cut(s) | 108, 409 |
| BspLI | GGNNCC | 1 cut(s) | 486 |
| BspPI | GGATC | 3 cut(s) | 128, 254, 640 |
| BspT104I | TTCGAA | 1 cut(s) | 861 |
| BsrDI | GCAATG | 1 cut(s) | 470 |
| BsrGI | TGTACA | 1 cut(s) | 541 |
| BsrI | ACTGG | 2 cut(s) | 193, 943 |
| BssECI | CCNNGG | 5 cut(s) | 420, 480, 690, 717, 955 |
| BssSI | CACGAG | 3 cut(s) | 175, 340, 382 |
| BssT1I | CCWWGG | 4 cut(s) | 420, 480, 690, 955 |
| Bst2BI | CACGAG | 3 cut(s) | 175, 340, 382 |
| Bst2UI | CCWGG | 2 cut(s) | 21, 719 |
| Bst4CI | ACNGT | 3 cut(s) | 142, 250, 537 |
| BstAUI | TGTACA | 1 cut(s) | 541 |
| BstBI | TTCGAA | 1 cut(s) | 861 |
| BstC8I | GCNNGC | 2 cut(s) | 627, 896 |
| BstDEI | CTNAG | 4 cut(s) | 35, 498, 564, 579 |
| BstF5I | GGATG | 4 cut(s) | 10, 15, 456, 758 |
| BstMCI | CGRYCG | 1 cut(s) | 413 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 186 |
| BstNI | CCWGG | 2 cut(s) | 21, 719 |
| BstNSI | RCATGY | 1 cut(s) | 813 |
| BstSCI | CCNGG | 3 cut(s) | 19, 211, 717 |
| BstSLI | GKGCMC | 1 cut(s) | 19 |
| BstV1I | GCAGC | 1 cut(s) | 910 |
| BstX2I | RGATCY | 2 cut(s) | 133, 547 |
| BstYI | RGATCY | 2 cut(s) | 133, 547 |
| Bsu15I | ATCGAT | 2 cut(s) | 108, 409 |
| BsuI | GTATCC | 1 cut(s) | 265 |
| BsuRI | GGCC | 3 cut(s) | 512, 591, 776 |
| BsuTUI | ATCGAT | 2 cut(s) | 108, 409 |
| BtsCI | GGATG | 4 cut(s) | 10, 15, 456, 758 |
| BtsIMutI | CAGTG | 1 cut(s) | 175 |
| Cac8I | GCNNGC | 2 cut(s) | 627, 896 |
| Cfr13I | GGNCC | 2 cut(s) | 200, 477 |
| ClaI | ATCGAT | 2 cut(s) | 108, 409 |
| CseI | GACGC | 2 cut(s) | 341, 588 |
| Csp6I | GTAC | 3 cut(s) | 243, 533, 542 |
| CviAII | CATG | 1 cut(s) | 810 |
| CviQI | GTAC | 3 cut(s) | 243, 533, 542 |
| DdeI | CTNAG | 4 cut(s) | 35, 498, 564, 579 |
| EaeI | YGGCCR | 1 cut(s) | 774 |
| Eco130I | CCWWGG | 4 cut(s) | 420, 480, 690, 955 |
| Eco147I | AGGCCT | 1 cut(s) | 512 |
| Eco47I | GGWCC | 2 cut(s) | 200, 477 |
| EcoRII | CCWGG | 2 cut(s) | 19, 717 |
| EcoT14I | CCWWGG | 4 cut(s) | 420, 480, 690, 955 |
| EcoT22I | ATGCAT | 1 cut(s) | 472 |
| ErhI | CCWWGG | 4 cut(s) | 420, 480, 690, 955 |
| FaeI | CATG | 1 cut(s) | 813 |
| FaiI | YATR | 7 cut(s) | 80, 240, 468, 540, 605, 741, 811 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 447, 479 |
| FatI | CATG | 1 cut(s) | 809 |
| FbaI | TGATCA | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 1 cut(s) | 899 |
| FokI | GGATG | 4 cut(s) | 17, 22, 463, 765 |
| Fsp4HI | GCNGC | 1 cut(s) | 899 |
| GluI | GCNGC | 1 cut(s) | 899 |
| GsuI | CTGGAG | 1 cut(s) | 960 |
| HaeIII | GGCC | 3 cut(s) | 512, 591, 776 |
| HapII | CCGG | 2 cut(s) | 212, 588 |
| HgaI | GACGC | 2 cut(s) | 341, 588 |
| Hin1II | CATG | 1 cut(s) | 813 |
| HindIII | AAGCTT | 1 cut(s) | 976 |
| HinfI | GANTC | 3 cut(s) | 338, 800, 858 |
| HpaII | CCGG | 2 cut(s) | 212, 588 |
| HphI | GGTGA | 1 cut(s) | 946 |
| Hpy166II | GTNNAC | 1 cut(s) | 17 |
| Hpy188I | TCNGA | 5 cut(s) | 259, 430, 705, 825, 951 |
| Hpy188III | TCNNGA | 1 cut(s) | 414 |
| Hpy8I | GTNNAC | 1 cut(s) | 17 |
| HpyCH4III | ACNGT | 3 cut(s) | 142, 250, 537 |
| HpyCH4V | TGCA | 5 cut(s) | 17, 89, 470, 553, 756 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 186 |
| HpyF3I | CTNAG | 4 cut(s) | 35, 498, 564, 579 |
| Hsp92II | CATG | 1 cut(s) | 813 |
| Ksp22I | TGATCA | 1 cut(s) | 97 |
| LmnI | GCTCC | 2 cut(s) | 727, 941 |
| Lsp1109I | GCAGC | 1 cut(s) | 910 |
| LweI | GCATC | 5 cut(s) | 57, 76, 517, 620, 743 |
| MaeIII | GTNAC | 5 cut(s) | 41, 66, 158, 712, 934 |
| MboII | GAAGA | 3 cut(s) | 143, 332, 335 |
| MflI | RGATCY | 2 cut(s) | 133, 547 |
| MhlI | GDGCHC | 1 cut(s) | 19 |
| MlsI | TGGCCA | 1 cut(s) | 776 |
| MluCI | AATT | 6 cut(s) | 659, 696, 843, 847, 919, 965 |
| MluNI | TGGCCA | 1 cut(s) | 776 |
| MlyI | GAGTC | 1 cut(s) | 332 |
| MmeI | TCCRAC | 4 cut(s) | 161, 227, 502, 671 |
| MnlI | CCTC | 8 cut(s) | 32, 113, 378, 426, 435, 441, 523, 718 |
| Mox20I | TGGCCA | 1 cut(s) | 776 |
| Mph1103I | ATGCAT | 1 cut(s) | 472 |
| MscI | TGGCCA | 1 cut(s) | 776 |
| MseI | TTAA | 2 cut(s) | 683, 846 |
| MslI | CAYNNNNRTG | 2 cut(s) | 294, 500 |
| Msp20I | TGGCCA | 1 cut(s) | 776 |
| MspI | CCGG | 2 cut(s) | 212, 588 |
| MspR9I | CCNGG | 3 cut(s) | 21, 213, 719 |
| MvaI | CCWGG | 2 cut(s) | 21, 719 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 186 |
| NciI | CCSGG | 1 cut(s) | 213 |
| NlaIII | CATG | 1 cut(s) | 813 |
| NlaIV | GGNNCC | 1 cut(s) | 486 |
| NmuCI | GTSAC | 4 cut(s) | 41, 158, 712, 934 |
| NsiI | ATGCAT | 1 cut(s) | 472 |
| NspI | RCATGY | 1 cut(s) | 813 |
| NspV | TTCGAA | 1 cut(s) | 861 |
| PceI | AGGCCT | 1 cut(s) | 512 |
| PfeI | GAWTC | 2 cut(s) | 800, 858 |
| PkrI | GCNGC | 1 cut(s) | 900 |
| Ple19I | CGATCG | 1 cut(s) | 413 |
| PleI | GAGTC | 1 cut(s) | 332 |
| PpsI | GAGTC | 1 cut(s) | 332 |
| PshBI | ATTAAT | 1 cut(s) | 846 |
| Psp6I | CCWGG | 2 cut(s) | 19, 717 |
| PspGI | CCWGG | 2 cut(s) | 19, 717 |
| PspN4I | GGNNCC | 1 cut(s) | 486 |
| PspPI | GGNCC | 2 cut(s) | 200, 477 |
| PsuI | RGATCY | 2 cut(s) | 133, 547 |
| PvuI | CGATCG | 1 cut(s) | 413 |
| RsaI | GTAC | 3 cut(s) | 244, 534, 543 |
| RsaNI | GTAC | 3 cut(s) | 243, 533, 542 |
| RseI | CAYNNNNRTG | 2 cut(s) | 294, 500 |
| SaqAI | TTAA | 2 cut(s) | 683, 846 |
| SatI | GCNGC | 1 cut(s) | 899 |
| Sau96I | GGNCC | 2 cut(s) | 200, 477 |
| ScaI | AGTACT | 1 cut(s) | 244 |
| SchI | GAGTC | 1 cut(s) | 332 |
| ScrFI | CCNGG | 3 cut(s) | 21, 213, 719 |
| SduI | GDGCHC | 1 cut(s) | 19 |
| SfaNI | GCATC | 5 cut(s) | 57, 76, 517, 620, 743 |
| SfuI | TTCGAA | 1 cut(s) | 861 |
| SinI | GGWCC | 2 cut(s) | 200, 477 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 294, 500 |
| Sse9I | AATT | 6 cut(s) | 659, 696, 843, 847, 919, 965 |
| SseBI | AGGCCT | 1 cut(s) | 512 |
| SsiI | CCGC | 1 cut(s) | 475 |
| StuI | AGGCCT | 1 cut(s) | 512 |
| StyD4I | CCNGG | 3 cut(s) | 19, 211, 717 |
| StyI | CCWWGG | 4 cut(s) | 420, 480, 690, 955 |
| TaaI | ACNGT | 3 cut(s) | 142, 250, 537 |
| TaqI | TCGA | 5 cut(s) | 108, 118, 409, 413, 861 |
| TasI | AATT | 6 cut(s) | 659, 696, 843, 847, 919, 965 |
| TatI | WGTACW | 3 cut(s) | 242, 532, 541 |
| TfiI | GAWTC | 2 cut(s) | 800, 858 |
| Tru1I | TTAA | 2 cut(s) | 683, 846 |
| Tru9I | TTAA | 2 cut(s) | 683, 846 |
| TscAI | CASTG | 1 cut(s) | 175 |
| TseFI | GTSAC | 4 cut(s) | 41, 158, 712, 934 |
| TseI | GCWGC | 1 cut(s) | 898 |
| Tsp45I | GTSAC | 4 cut(s) | 41, 158, 712, 934 |
| TspDTI | ATGAA | 4 cut(s) | 94, 144, 320, 467 |
| TspRI | CASTG | 1 cut(s) | 175 |
| VneI | GTGCAC | 1 cut(s) | 15 |
| VpaK11BI | GGWCC | 2 cut(s) | 200, 477 |
| VspI | ATTAAT | 1 cut(s) | 846 |
| XapI | RAATTY | 1 cut(s) | 919 |
| XceI | RCATGY | 1 cut(s) | 813 |
| ZrmI | AGTACT | 1 cut(s) | 244 |
| Zsp2I | ATGCAT | 1 cut(s) | 472 |