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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 163 |
| AclWI | GGATC | 3 cut(s) | 155, 185, 198 |
| AcuI | CTGAAG | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 200 |
| AgsI | TTSAA | 1 cut(s) | 199 |
| AluBI | AGCT | 2 cut(s) | 72, 404 |
| AluI | AGCT | 2 cut(s) | 72, 404 |
| Alw21I | GWGCWC | 1 cut(s) | 417 |
| AlwI | GGATC | 3 cut(s) | 155, 185, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 163 |
| ApeKI | GCWGC | 1 cut(s) | 118 |
| AspS9I | GGNCC | 1 cut(s) | 63 |
| AsuHPI | GGTGA | 1 cut(s) | 44 |
| AvaII | GGWCC | 1 cut(s) | 63 |
| BamHI | GGATCC | 1 cut(s) | 190 |
| Bbv12I | GWGCWC | 1 cut(s) | 417 |
| BbvI | GCAGC | 1 cut(s) | 105 |
| BccI | CCATC | 1 cut(s) | 310 |
| BceAI | ACGGC | 1 cut(s) | 283 |
| BfaI | CTAG | 3 cut(s) | 131, 342, 348 |
| BisI | GCNGC | 1 cut(s) | 119 |
| BlsI | GCNGC | 1 cut(s) | 120 |
| Bme18I | GGWCC | 1 cut(s) | 63 |
| BmgT120I | GGNCC | 1 cut(s) | 63 |
| BmiI | GGNNCC | 1 cut(s) | 192 |
| BpuEI | CTTGAG | 1 cut(s) | 401 |
| BsaWI | WCCGGW | 1 cut(s) | 163 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 82, 112 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseAI | TCCGGA | 1 cut(s) | 163 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 200 |
| BseRI | GAGGAG | 1 cut(s) | 410 |
| BseXI | GCAGC | 1 cut(s) | 105 |
| BsiHKAI | GWGCWC | 1 cut(s) | 417 |
| BsiSI | CCGG | 1 cut(s) | 164 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 417 |
| Bsp13I | TCCGGA | 1 cut(s) | 163 |
| Bsp143I | GATC | 4 cut(s) | 127, 160, 174, 190 |
| BspEI | TCCGGA | 1 cut(s) | 163 |
| BspLI | GGNNCC | 1 cut(s) | 192 |
| BspPI | GGATC | 3 cut(s) | 155, 185, 198 |
| BssMI | GATC | 4 cut(s) | 127, 160, 174, 190 |
| Bst4CI | ACNGT | 1 cut(s) | 154 |
| Bst6I | CTCTTC | 1 cut(s) | 51 |
| BstDEI | CTNAG | 1 cut(s) | 304 |
| BstKTI | GATC | 4 cut(s) | 130, 163, 177, 193 |
| BstMBI | GATC | 4 cut(s) | 127, 160, 174, 190 |
| BstV1I | GCAGC | 1 cut(s) | 105 |
| BstX2I | RGATCY | 1 cut(s) | 190 |
| BstYI | RGATCY | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 1 cut(s) | 63 |
| CviAII | CATG | 3 cut(s) | 289, 392, 424 |
| CviJI | RGCY | 4 cut(s) | 72, 270, 338, 404 |
| CviKI_1 | RGCY | 4 cut(s) | 72, 270, 338, 404 |
| DdeI | CTNAG | 1 cut(s) | 304 |
| DpnI | GATC | 4 cut(s) | 129, 162, 176, 192 |
| DpnII | GATC | 4 cut(s) | 127, 160, 174, 190 |
| Eam1104I | CTCTTC | 1 cut(s) | 51 |
| EarI | CTCTTC | 1 cut(s) | 51 |
| Eco47I | GGWCC | 1 cut(s) | 63 |
| Eco57I | CTGAAG | 1 cut(s) | 75 |
| FaeI | CATG | 3 cut(s) | 292, 395, 427 |
| FatI | CATG | 3 cut(s) | 288, 391, 423 |
| Fnu4HI | GCNGC | 1 cut(s) | 119 |
| Fsp4HI | GCNGC | 1 cut(s) | 119 |
| FspBI | CTAG | 3 cut(s) | 131, 342, 348 |
| GluI | GCNGC | 1 cut(s) | 119 |
| HapII | CCGG | 1 cut(s) | 164 |
| Hin1II | CATG | 3 cut(s) | 292, 395, 427 |
| HincII | GTYRAC | 2 cut(s) | 16, 150 |
| HindII | GTYRAC | 2 cut(s) | 16, 150 |
| HindIII | AAGCTT | 1 cut(s) | 70 |
| HinfI | GANTC | 3 cut(s) | 84, 212, 237 |
| HpaI | GTTAAC | 1 cut(s) | 150 |
| HpaII | CCGG | 1 cut(s) | 164 |
| HphI | GGTGA | 1 cut(s) | 44 |
| Hpy166II | GTNNAC | 2 cut(s) | 16, 150 |
| Hpy188III | TCNNGA | 4 cut(s) | 164, 216, 376, 418 |
| Hpy8I | GTNNAC | 2 cut(s) | 16, 150 |
| HpyAV | CCTTC | 1 cut(s) | 31 |
| HpyCH4III | ACNGT | 1 cut(s) | 154 |
| HpyCH4V | TGCA | 2 cut(s) | 326, 391 |
| HpyF3I | CTNAG | 1 cut(s) | 304 |
| Hsp92II | CATG | 3 cut(s) | 292, 395, 427 |
| Kpn2I | TCCGGA | 1 cut(s) | 163 |
| KspAI | GTTAAC | 1 cut(s) | 150 |
| Kzo9I | GATC | 4 cut(s) | 127, 160, 174, 190 |
| LpnPI | CCDG | 4 cut(s) | 177, 201, 255, 390 |
| Lsp1109I | GCAGC | 1 cut(s) | 105 |
| MaeI | CTAG | 3 cut(s) | 131, 342, 348 |
| MalI | GATC | 4 cut(s) | 129, 162, 176, 192 |
| MboI | GATC | 4 cut(s) | 127, 160, 174, 190 |
| MboII | GAAGA | 1 cut(s) | 68 |
| MflI | RGATCY | 1 cut(s) | 190 |
| MhlI | GDGCHC | 1 cut(s) | 417 |
| MluCI | AATT | 1 cut(s) | 231 |
| MnlI | CCTC | 3 cut(s) | 54, 285, 388 |
| MroI | TCCGGA | 1 cut(s) | 163 |
| MseI | TTAA | 3 cut(s) | 74, 149, 433 |
| MspI | CCGG | 1 cut(s) | 164 |
| NdeII | GATC | 4 cut(s) | 127, 160, 174, 190 |
| NlaIII | CATG | 3 cut(s) | 292, 395, 427 |
| NlaIV | GGNNCC | 1 cut(s) | 192 |
| PfeI | GAWTC | 3 cut(s) | 84, 212, 237 |
| PkrI | GCNGC | 1 cut(s) | 120 |
| PspN4I | GGNNCC | 1 cut(s) | 192 |
| PspPI | GGNCC | 1 cut(s) | 63 |
| PsuI | RGATCY | 1 cut(s) | 190 |
| SaqAI | TTAA | 3 cut(s) | 74, 149, 433 |
| SatI | GCNGC | 1 cut(s) | 119 |
| Sau3AI | GATC | 4 cut(s) | 127, 160, 174, 190 |
| Sau96I | GGNCC | 1 cut(s) | 63 |
| SduI | GDGCHC | 1 cut(s) | 417 |
| SetI | ASST | 3 cut(s) | 74, 136, 406 |
| SinI | GGWCC | 1 cut(s) | 63 |
| SmlI | CTYRAG | 1 cut(s) | 416 |
| SmoI | CTYRAG | 1 cut(s) | 416 |
| Sse9I | AATT | 1 cut(s) | 231 |
| SspI | AATATT | 1 cut(s) | 111 |
| SspMI | CTAG | 3 cut(s) | 131, 342, 348 |
| TaaI | ACNGT | 1 cut(s) | 154 |
| TaqI | TCGA | 1 cut(s) | 82 |
| TasI | AATT | 1 cut(s) | 231 |
| TfiI | GAWTC | 3 cut(s) | 84, 212, 237 |
| Tru1I | TTAA | 3 cut(s) | 74, 149, 433 |
| Tru9I | TTAA | 3 cut(s) | 74, 149, 433 |
| TseI | GCWGC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 1 cut(s) | 399 |
| VpaK11BI | GGWCC | 1 cut(s) | 63 |
| XspI | CTAG | 3 cut(s) | 131, 342, 348 |