Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

27239067 .. 27242375

Gene Structure 3309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0258900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGAATCTGGCGGGAAGGCTTTTGTGGTTTTGGCGGGAGCGACTGGGACCAAGTTTGCAGCACTACCATCTTGGAAGTTCAAATAGTATTCAGCAAAGCGGAGCCGTCGTCGTTCTGAAAGCCAAGCTTTTAGTGGCGTTAGTGATGGCGAATGTCCTGTTAGGCATGCCAGGACCATGGGCAGATGATTTTCGTGAATCGTCTGATCATTATACAACGAAAATTGGTGGACTACCTGATTGGCCCCTTCCTGAGGAATCCGTGCCACCGAATCTGCTTCAATGTAGTGCTTGTGGAAGTAAACTATGTCTTGTTGCGCAGGTTTATGCTCCAGTTTCGAGTGAAAACTTAAGAGTTGAAGAGCGTGTTCTTTTTGTTTTTGGTTGTCTGATGGAAAAGTGTGGGAGCACTCCTCTTAGCTGGCGAGCTCTTCGTCTTCAAAAATTAGACGATGCGGTGCAATCAAATACCACTTCTCAGGAAGTGGTGCCAATGACTTCACCATCTGTATCAGTTTCAAACAAAAGCTGGTGGGAGGATTTGGATGATGAAGATGGAGATATCGATTTGGAGGAGTTGGGTAAAGCACTTAATAGTGCTGCGAGCTTCGCTTCTCATACCAAGAAACCACATGTGAATGAACGTAGTAAGCCTGTTGCAAAACCATCACCTTCAAGTCAGTTGGAAAAAGTGGTAGACGCATTAACACCCGTGCTGCCTTGTTTTTATTTATACACTCAAGAAGAGGCATCTTCAAAGGACAACCTTACTTCTATGTGTTCGAACTACTCATCGCTTTCCATCAAAAATAACTCAAATGATGAGGATGATGCACAAAGTGAAACATGGGCAGAGGAAGCTTATGAATATGATAAAGCTTTGACTGCAGACAGGACATACCTTAAGTTTAAGAAACGATTGGATGTTAACCCAGAACAATGTTTCAGATATTCATATGGTGGAAATCCACTCCTAGCTACACAAGCCGAAGGCGACCCTGGGAGATGTACATTGTGTGGTGGATCAAGGCATTATGAAATGCAGCTAATGCCTCCATTATTATATTTTCTACAAGGAGCTGCCGATGATTGCCAAAGACGGTCACTGGAGAACTGGAACTGGATGACACTTATGGTATATACTTGTTCCCAGAGCTGTTCTCAACATTTTGATCAAGGAAATTCAAACACTGGGAAGTGGCTTGTGACAGAGGAAGCTATTCTTGTACAACTAGAGAAATCCTTTCCCGGGGTAGCCGAACATAGCTATTCATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

425

Amino Acids

47.36

Weight (kDa)

4.96

Isoelectric Point (pI)

51.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD2_C	PF04194	297 - 410	4.1e-29	Programmed cell death protein 2, C-terminal putative domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	318
Acc36I	ACCTGC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	487
AccI	GTMKAC	1 cut(s)	696
AciI	CCGC	4 cut(s)	11, 34, 99, 455
AclWI	GGATC	1 cut(s)	1030
AcsI	RAATTY	1 cut(s)	1180
AdeI	CACNNNGTG	1 cut(s)	839
AfaI	GTAC	2 cut(s)	1009, 1227
AfiI	CCNNNNNNNGG	2 cut(s)	253, 1248
AflII	CTTAAG	2 cut(s)	349, 902
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	8 cut(s)	81, 281, 359, 440, 519, 675, 756, 1185
AjnI	CCWGG	2 cut(s)	169, 997
Alw21I	GWGCWC	2 cut(s)	410, 430
AlwI	GGATC	1 cut(s)	1030
Ama87I	CYCGRG	1 cut(s)	1247
AoxI	GGCC	1 cut(s)	242
ApeKI	GCWGC	5 cut(s)	58, 599, 715, 1042, 1079
ApoI	RAATTY	1 cut(s)	1180
Asp700I	GAANNNNTTC	1 cut(s)	1218
AspLEI	GCGC	1 cut(s)	319
AspS9I	GGNCC	3 cut(s)	47, 173, 243
AsuC2I	CCSGG	2 cut(s)	1248, 1249
AsuHPI	GGTGA	2 cut(s)	492, 660
AsuII	TTCGAA	1 cut(s)	782
AvaI	CYCGRG	1 cut(s)	1247
AvaII	GGWCC	2 cut(s)	47, 173
AxyI	CCTNAGG	1 cut(s)	252
BanI	GGYRCC	1 cut(s)	487
BanII	GRGCYC	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	428
Bbv12I	GWGCWC	2 cut(s)	410, 430
BbvI	GCAGC	5 cut(s)	70, 586, 702, 1054, 1066
BccI	CCATC	7 cut(s)	75, 139, 385, 511, 548, 673, 809
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	2 cut(s)	171, 999
BclI	TGATCA	2 cut(s)	205, 1171
BcnI	CCSGG	2 cut(s)	1248, 1249
BfaI	CTAG	2 cut(s)	974, 1232
BfmI	CTRYAG	1 cut(s)	885
BfrI	CTTAAG	2 cut(s)	349, 902
BfuAI	ACCTGC	1 cut(s)	310
BisI	GCNGC	5 cut(s)	59, 600, 716, 1043, 1080
BlsI	GCNGC	5 cut(s)	60, 601, 717, 1044, 1081
Bme1390I	CCNGG	4 cut(s)	171, 999, 1248, 1249
Bme18I	GGWCC	2 cut(s)	47, 173
BmeT110I	CYCGRG	1 cut(s)	1247
BmgT120I	GGNCC	3 cut(s)	47, 173, 243
BmiI	GGNNCC	4 cut(s)	48, 103, 245, 489
BmrFI	CCNGG	4 cut(s)	171, 999, 1248, 1249
BmrI	ACTGGG	2 cut(s)	53, 1200
BmsI	GCATC	3 cut(s)	442, 758, 820
BmuI	ACTGGG	2 cut(s)	53, 1200
BpiI	GAAGAC	1 cut(s)	428
BplI	GAGNNNNNCTC	4 cut(s)	397, 429, 1144, 1176
BpmI	CTGGAG	2 cut(s)	315, 1127
Bpu14I	TTCGAA	1 cut(s)	782
BpuEI	CTTGAG	1 cut(s)	723
BpuMI	CCSGG	2 cut(s)	1248, 1249
Bsa29I	ATCGAT	1 cut(s)	564
BsaJI	CCNNGG	5 cut(s)	176, 997, 998, 1247, 1248
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	253, 1248
Bse1I	ACTGG	6 cut(s)	48, 332, 1110, 1118, 1124, 1195
Bse21I	CCTNAGG	1 cut(s)	252
BseBI	CCWGG	2 cut(s)	171, 999
BseCI	ATCGAT	1 cut(s)	564
BseDI	CCNNGG	5 cut(s)	176, 997, 998, 1247, 1248
BseGI	GGATG	4 cut(s)	550, 832, 928, 1128
BseLI	CCNNNNNNNGG	2 cut(s)	253, 1248
BseMII	CTCAG	2 cut(s)	243, 491
BseNI	ACTGG	6 cut(s)	48, 332, 1110, 1118, 1124, 1195
BseRI	GAGGAG	2 cut(s)	402, 587
BseXI	GCAGC	5 cut(s)	70, 586, 702, 1054, 1066
BshFI	GGCC	1 cut(s)	244
BshNI	GGYRCC	1 cut(s)	487
BshVI	ATCGAT	1 cut(s)	564
BsiHKAI	GWGCWC	2 cut(s)	410, 430
BsiHKCI	CYCGRG	1 cut(s)	1247
BsiSI	CCGG	1 cut(s)	1248
BslFI	GGGAC	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	253, 1248
BsmFI	GGGAC	1 cut(s)	60
BsnI	GGCC	1 cut(s)	244
BsoBI	CYCGRG	1 cut(s)	1247
Bsp119I	TTCGAA	1 cut(s)	782
Bsp1286I	GDGCHC	2 cut(s)	410, 430
Bsp1407I	TGTACA	2 cut(s)	1007, 1225
Bsp143I	GATC	3 cut(s)	205, 1022, 1171
Bsp19I	CCATGG	1 cut(s)	176
BspACI	CCGC	4 cut(s)	11, 34, 99, 455
BspANI	GGCC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	244, 490
BspDI	ATCGAT	1 cut(s)	564
BspLI	GGNNCC	4 cut(s)	48, 103, 245, 489
BspMAI	CTGCAG	1 cut(s)	889
BspMI	ACCTGC	1 cut(s)	310
BspPI	GGATC	1 cut(s)	1030
BspQI	GCTCTTC	2 cut(s)	354, 435
BspT104I	TTCGAA	1 cut(s)	782
BspT107I	GGYRCC	1 cut(s)	487
BspTI	CTTAAG	2 cut(s)	349, 902
BsrGI	TGTACA	2 cut(s)	1007, 1225
BsrI	ACTGG	6 cut(s)	48, 332, 1110, 1118, 1124, 1195
BssECI	CCNNGG	5 cut(s)	176, 997, 998, 1247, 1248
BssMI	GATC	3 cut(s)	205, 1022, 1171
BssT1I	CCWWGG	1 cut(s)	176
Bst2UI	CCWGG	2 cut(s)	171, 999
Bst4CI	ACNGT	1 cut(s)	1101
Bst6I	CTCTTC	3 cut(s)	354, 435, 738
BstAFI	CTTAAG	2 cut(s)	349, 902
BstAPI	GCANNNNNTGC	1 cut(s)	1048
BstAUI	TGTACA	2 cut(s)	1007, 1225
BstBI	TTCGAA	1 cut(s)	782
BstC8I	GCNNGC	4 cut(s)	167, 422, 426, 604
BstDEI	CTNAG	3 cut(s)	252, 416, 477
BstDSI	CCRYGG	1 cut(s)	176
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	4 cut(s)	550, 832, 928, 1128
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	3 cut(s)	208, 1025, 1174
BstMBI	GATC	3 cut(s)	205, 1022, 1171
BstMWI	GCNNNNNNNGC	5 cut(s)	608, 857, 884, 983, 1048
BstNI	CCWGG	2 cut(s)	171, 999
BstNSI	RCATGY	2 cut(s)	169, 635
BstSCI	CCNGG	4 cut(s)	169, 997, 1246, 1247
BstSFI	CTRYAG	1 cut(s)	885
BstV1I	GCAGC	5 cut(s)	70, 586, 702, 1054, 1066
BstV2I	GAAGAC	1 cut(s)	428
BstXI	CCANNNNNNTGG	1 cut(s)	177
Bsu15I	ATCGAT	1 cut(s)	564
Bsu36I	CCTNAGG	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	244
BsuTUI	ATCGAT	1 cut(s)	564
BtgI	CCRYGG	1 cut(s)	176
BtgZI	GCGATG	1 cut(s)	777
BtsCI	GGATG	4 cut(s)	550, 832, 928, 1128
BtsIMutI	CAGTG	2 cut(s)	1103, 1188
BveI	ACCTGC	1 cut(s)	310
Cac8I	GCNNGC	4 cut(s)	167, 422, 426, 604
CfoI	GCGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	47, 173, 243
Cfr9I	CCCGGG	1 cut(s)	1247
ClaI	ATCGAT	1 cut(s)	564
CseI	GACGC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	1008, 1226
CviAII	CATG	4 cut(s)	166, 177, 632, 846
CviQI	GTAC	2 cut(s)	1008, 1226
DdeI	CTNAG	3 cut(s)	252, 416, 477
DpnI	GATC	3 cut(s)	207, 1024, 1173
DpnII	GATC	3 cut(s)	205, 1022, 1171
DraIII	CACNNNGTG	1 cut(s)	839
Eam1104I	CTCTTC	3 cut(s)	354, 435, 738
EarI	CTCTTC	3 cut(s)	354, 435, 738
Ecl136II	GAGCTC	1 cut(s)	428
Eco130I	CCWWGG	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	430
Eco32I	GATATC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	47, 173
Eco53kI	GAGCTC	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	1247
EcoICRI	GAGCTC	1 cut(s)	428
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	169, 997
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	4 cut(s)	169, 180, 635, 849
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 1206, 1238
FaqI	GGGAC	1 cut(s)	60
FatI	CATG	4 cut(s)	165, 176, 631, 845
FauI	CCCGC	2 cut(s)	4, 27
FauNDI	CATATG	1 cut(s)	955
FbaI	TGATCA	2 cut(s)	205, 1171
FblI	GTMKAC	1 cut(s)	696
Fnu4HI	GCNGC	5 cut(s)	59, 600, 716, 1043, 1080
FokI	GGATG	4 cut(s)	557, 839, 935, 1135
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	5 cut(s)	59, 600, 716, 1043, 1080
FspBI	CTAG	2 cut(s)	974, 1232
FspI	TGCGCA	1 cut(s)	318
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	5 cut(s)	59, 600, 716, 1043, 1080
GsuI	CTGGAG	2 cut(s)	315, 1127
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	1248
HgaI	GACGC	1 cut(s)	707
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	4 cut(s)	169, 180, 635, 849
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HincII	GTYRAC	1 cut(s)	928
HindII	GTYRAC	1 cut(s)	928
HindIII	AAGCTT	3 cut(s)	125, 858, 876
HinfI	GANTC	4 cut(s)	4, 197, 257, 271
HpaI	GTTAAC	1 cut(s)	928
HpaII	CCGG	1 cut(s)	1248
HphI	GGTGA	2 cut(s)	492, 660
Hpy166II	GTNNAC	4 cut(s)	230, 302, 697, 928
Hpy188I	TCNGA	4 cut(s)	117, 205, 390, 947
Hpy188III	TCNNGA	4 cut(s)	194, 251, 479, 740
Hpy8I	GTNNAC	4 cut(s)	230, 302, 697, 928
Hpy99I	CGWCG	2 cut(s)	110, 113
HpyAV	CCTTC	4 cut(s)	9, 257, 681, 983
HpyCH4III	ACNGT	1 cut(s)	1101
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	6 cut(s)	58, 460, 659, 833, 887, 1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	608, 857, 884, 983, 1048
HpyF3I	CTNAG	3 cut(s)	252, 416, 477
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	4 cut(s)	169, 180, 635, 849
HspAI	GCGC	1 cut(s)	317
Ksp22I	TGATCA	2 cut(s)	205, 1171
KspAI	GTTAAC	1 cut(s)	928
Kzo9I	GATC	3 cut(s)	205, 1022, 1171
LguI	GCTCTTC	2 cut(s)	354, 435
LmnI	GCTCC	5 cut(s)	37, 101, 334, 405, 1076
Lsp1109I	GCAGC	5 cut(s)	70, 586, 702, 1054, 1066
LweI	GCATC	3 cut(s)	442, 758, 820
MaeI	CTAG	2 cut(s)	974, 1232
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	1101, 1204
MalI	GATC	3 cut(s)	207, 1024, 1173
MboI	GATC	3 cut(s)	205, 1022, 1171
MboII	GAAGA	6 cut(s)	371, 422, 428, 563, 744, 755
MhlI	GDGCHC	2 cut(s)	410, 430
MluCI	AATT	3 cut(s)	222, 443, 1180
MmeI	TCCRAC	1 cut(s)	663
MnlI	CCTC	9 cut(s)	247, 423, 529, 565, 739, 817, 847, 1062, 1204
MroXI	GAANNNNTTC	1 cut(s)	1218
MseI	TTAA	6 cut(s)	350, 591, 704, 903, 909, 927
MslI	CAYNNNNRTG	1 cut(s)	636
MspCI	CTTAAG	2 cut(s)	349, 902
MspI	CCGG	1 cut(s)	1248
MspR9I	CCNGG	4 cut(s)	171, 999, 1248, 1249
MvaI	CCWGG	2 cut(s)	171, 999
MwoI	GCNNNNNNNGC	5 cut(s)	608, 857, 884, 983, 1048
NciI	CCSGG	2 cut(s)	1248, 1249
NcoI	CCATGG	1 cut(s)	176
NdeI	CATATG	1 cut(s)	955
NdeII	GATC	3 cut(s)	205, 1022, 1171
NlaIII	CATG	4 cut(s)	169, 180, 635, 849
NlaIV	GGNNCC	4 cut(s)	48, 103, 245, 489
NmuCI	GTSAC	2 cut(s)	1101, 1204
NsbI	TGCGCA	1 cut(s)	318
NspI	RCATGY	2 cut(s)	169, 635
NspV	TTCGAA	1 cut(s)	782
PaeI	GCATGC	1 cut(s)	169
PasI	CCCWGGG	1 cut(s)	998
PciI	ACATGT	1 cut(s)	631
PciSI	GCTCTTC	2 cut(s)	354, 435
PdmI	GAANNNNTTC	1 cut(s)	1218
PfeI	GAWTC	4 cut(s)	4, 197, 257, 271
PkrI	GCNGC	5 cut(s)	60, 601, 717, 1044, 1081
PscI	ACATGT	1 cut(s)	631
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	169, 997
PspGI	CCWGG	2 cut(s)	169, 997
PspN4I	GGNNCC	4 cut(s)	48, 103, 245, 489
PspPI	GGNCC	3 cut(s)	47, 173, 243
PstI	CTGCAG	1 cut(s)	889
RsaI	GTAC	2 cut(s)	1009, 1227
RsaNI	GTAC	2 cut(s)	1008, 1226
RseI	CAYNNNNRTG	1 cut(s)	636
SacI	GAGCTC	1 cut(s)	430
SapI	GCTCTTC	2 cut(s)	354, 435
SaqAI	TTAA	6 cut(s)	350, 591, 704, 903, 909, 927
SatI	GCNGC	5 cut(s)	59, 600, 716, 1043, 1080
Sau3AI	GATC	3 cut(s)	205, 1022, 1171
Sau96I	GGNCC	3 cut(s)	47, 173, 243
ScrFI	CCNGG	4 cut(s)	171, 999, 1248, 1249
SduI	GDGCHC	2 cut(s)	410, 430
SfaNI	GCATC	3 cut(s)	442, 758, 820
SfcI	CTRYAG	1 cut(s)	885
SfuI	TTCGAA	1 cut(s)	782
SinI	GGWCC	2 cut(s)	47, 173
SmaI	CCCGGG	1 cut(s)	1249
SmiMI	CAYNNNNRTG	1 cut(s)	636
SmlI	CTYRAG	3 cut(s)	349, 738, 902
SmoI	CTYRAG	3 cut(s)	349, 738, 902
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	3 cut(s)	222, 443, 1180
SsiI	CCGC	4 cut(s)	11, 34, 99, 455
SspMI	CTAG	2 cut(s)	974, 1232
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	4 cut(s)	169, 997, 1246, 1247
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	1101
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	3 cut(s)	338, 564, 782
TasI	AATT	3 cut(s)	222, 443, 1180
TatI	WGTACW	2 cut(s)	1007, 1225
TfiI	GAWTC	4 cut(s)	4, 197, 257, 271
Tru1I	TTAA	6 cut(s)	350, 591, 704, 903, 909, 927
Tru9I	TTAA	6 cut(s)	350, 591, 704, 903, 909, 927
TscAI	CASTG	2 cut(s)	1110, 1195
TseFI	GTSAC	2 cut(s)	1101, 1204
TseI	GCWGC	5 cut(s)	58, 599, 715, 1042, 1079
Tsp45I	GTSAC	2 cut(s)	1101, 1204
TspDTI	ATGAA	7 cut(s)	17, 564, 654, 879, 942, 1050, 1260
TspGWI	ACGGA	1 cut(s)	250
TspMI	CCCGGG	1 cut(s)	1247
TspRI	CASTG	2 cut(s)	1110, 1195
Vha464I	CTTAAG	2 cut(s)	349, 902
VpaK11BI	GGWCC	2 cut(s)	47, 173
XagI	CCTNNNNNAGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	1180
XceI	RCATGY	2 cut(s)	169, 635
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XmaI	CCCGGG	1 cut(s)	1247
XmiI	GTMKAC	1 cut(s)	696
XmnI	GAANNNNTTC	1 cut(s)	1218
XspI	CTAG	2 cut(s)	974, 1232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.