Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SAD_SRA | PF02182 | 320 - 387 | 9.6e-15 | SAD/SRA domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 951 |
| AccI | GTMKAC | 1 cut(s) | 823 |
| AccIII | TCCGGA | 1 cut(s) | 1132 |
| AcsI | RAATTY | 1 cut(s) | 1090 |
| AcuI | CTGAAG | 2 cut(s) | 132, 605 |
| AfaI | GTAC | 1 cut(s) | 157 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 131, 248, 578, 784, 998 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 98, 801 |
| AhlI | ACTAGT | 1 cut(s) | 1043 |
| AjnI | CCWGG | 3 cut(s) | 124, 536, 571 |
| AleI | CACNNNNGTG | 1 cut(s) | 333 |
| AluBI | AGCT | 5 cut(s) | 325, 619, 625, 887, 1159 |
| AluI | AGCT | 5 cut(s) | 325, 619, 625, 887, 1159 |
| Alw26I | GTCTC | 3 cut(s) | 85, 106, 788 |
| Ama87I | CYCGRG | 1 cut(s) | 80 |
| Aor13HI | TCCGGA | 1 cut(s) | 1132 |
| AoxI | GGCC | 4 cut(s) | 77, 270, 555, 1108 |
| ApaI | GGGCCC | 1 cut(s) | 81 |
| ApeKI | GCWGC | 4 cut(s) | 10, 744, 747, 887 |
| ApoI | RAATTY | 1 cut(s) | 1090 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 225, 324 |
| AspS9I | GGNCC | 4 cut(s) | 77, 78, 556, 1108 |
| AsuC2I | CCSGG | 1 cut(s) | 958 |
| AsuHPI | GGTGA | 2 cut(s) | 799, 980 |
| AvaI | CYCGRG | 1 cut(s) | 80 |
| BaeGI | GKGCMC | 1 cut(s) | 81 |
| BanII | GRGCYC | 1 cut(s) | 81 |
| BbsI | GAAGAC | 1 cut(s) | 719 |
| BbvI | GCAGC | 4 cut(s) | 22, 756, 759, 874 |
| BccI | CCATC | 4 cut(s) | 388, 400, 462, 782 |
| BceAI | ACGGC | 1 cut(s) | 181 |
| BciT130I | CCWGG | 3 cut(s) | 126, 538, 573 |
| BcnI | CCSGG | 1 cut(s) | 958 |
| BcoDI | GTCTC | 3 cut(s) | 85, 106, 788 |
| BcuI | ACTAGT | 1 cut(s) | 1043 |
| BfaI | CTAG | 4 cut(s) | 384, 626, 735, 1044 |
| BglII | AGATCT | 1 cut(s) | 632 |
| BisI | GCNGC | 4 cut(s) | 11, 745, 748, 888 |
| BlsI | GCNGC | 4 cut(s) | 12, 746, 749, 889 |
| Bme1390I | CCNGG | 4 cut(s) | 126, 538, 573, 958 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 98, 801 |
| BmeT110I | CYCGRG | 1 cut(s) | 80 |
| BmgT120I | GGNCC | 4 cut(s) | 77, 78, 556, 1108 |
| BmiI | GGNNCC | 2 cut(s) | 79, 1143 |
| BmrFI | CCNGG | 4 cut(s) | 126, 538, 573, 958 |
| BmsI | GCATC | 7 cut(s) | 533, 631, 760, 1023, 1064, 1116, 1138 |
| BpiI | GAAGAC | 1 cut(s) | 719 |
| BpuEI | CTTGAG | 3 cut(s) | 342, 884, 981 |
| BpuMI | CCSGG | 1 cut(s) | 958 |
| BsaI | GGTCTC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 6 cut(s) | 66, 125, 273, 416, 956, 1111 |
| BsaWI | WCCGGW | 1 cut(s) | 1132 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1107, 1137 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 131, 248, 578, 784, 998 |
| Bse1I | ACTGG | 3 cut(s) | 724, 834, 931 |
| BseAI | TCCGGA | 1 cut(s) | 1132 |
| BseBI | CCWGG | 3 cut(s) | 126, 538, 573 |
| BseDI | CCNNGG | 6 cut(s) | 66, 125, 273, 416, 956, 1111 |
| BseGI | GGATG | 6 cut(s) | 313, 411, 529, 774, 775, 1129 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 131, 248, 578, 784, 998 |
| BseMII | CTCAG | 3 cut(s) | 33, 678, 880 |
| BseNI | ACTGG | 3 cut(s) | 724, 834, 931 |
| BseRI | GAGGAG | 2 cut(s) | 195, 591 |
| BseSI | GKGCMC | 1 cut(s) | 81 |
| BseXI | GCAGC | 4 cut(s) | 22, 756, 759, 874 |
| BshFI | GGCC | 4 cut(s) | 79, 272, 557, 1110 |
| BsiHKCI | CYCGRG | 1 cut(s) | 80 |
| BsiSI | CCGG | 2 cut(s) | 958, 1133 |
| BslFI | GGGAC | 2 cut(s) | 939, 957 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 131, 248, 578, 784, 998 |
| BsmAI | GTCTC | 3 cut(s) | 85, 106, 788 |
| BsmBI | CGTCTC | 1 cut(s) | 788 |
| BsmFI | GGGAC | 2 cut(s) | 939, 957 |
| BsnI | GGCC | 4 cut(s) | 79, 272, 557, 1110 |
| Bso31I | GGTCTC | 1 cut(s) | 85 |
| BsoBI | CYCGRG | 1 cut(s) | 80 |
| Bsp120I | GGGCCC | 1 cut(s) | 77 |
| Bsp1286I | GDGCHC | 1 cut(s) | 81 |
| Bsp13I | TCCGGA | 1 cut(s) | 1132 |
| Bsp143I | GATC | 2 cut(s) | 632, 1150 |
| BspANI | GGCC | 4 cut(s) | 79, 272, 557, 1110 |
| BspCNI | CTCAG | 3 cut(s) | 34, 677, 879 |
| BspEI | TCCGGA | 1 cut(s) | 1132 |
| BspHI | TCATGA | 1 cut(s) | 754 |
| BspLI | GGNNCC | 2 cut(s) | 79, 1143 |
| BspQI | GCTCTTC | 1 cut(s) | 315 |
| BspTNI | GGTCTC | 1 cut(s) | 85 |
| BsrI | ACTGG | 3 cut(s) | 724, 834, 931 |
| BssECI | CCNNGG | 6 cut(s) | 66, 125, 273, 416, 956, 1111 |
| BssMI | GATC | 2 cut(s) | 632, 1150 |
| BssT1I | CCWWGG | 4 cut(s) | 66, 273, 416, 1111 |
| Bst2UI | CCWGG | 3 cut(s) | 126, 538, 573 |
| Bst4CI | ACNGT | 3 cut(s) | 138, 187, 335 |
| Bst6I | CTCTTC | 1 cut(s) | 315 |
| BstC8I | GCNNGC | 2 cut(s) | 522, 1038 |
| BstDEI | CTNAG | 3 cut(s) | 42, 664, 866 |
| BstF5I | GGATG | 6 cut(s) | 313, 411, 529, 774, 775, 1129 |
| BstKTI | GATC | 2 cut(s) | 635, 1153 |
| BstMAI | GTCTC | 3 cut(s) | 85, 106, 788 |
| BstMBI | GATC | 2 cut(s) | 632, 1150 |
| BstNI | CCWGG | 3 cut(s) | 126, 538, 573 |
| BstNSI | RCATGY | 2 cut(s) | 950, 954 |
| BstSCI | CCNGG | 4 cut(s) | 124, 536, 571, 956 |
| BstSLI | GKGCMC | 1 cut(s) | 81 |
| BstV1I | GCAGC | 4 cut(s) | 22, 756, 759, 874 |
| BstV2I | GAAGAC | 1 cut(s) | 719 |
| BstX2I | RGATCY | 1 cut(s) | 632 |
| BstYI | RGATCY | 1 cut(s) | 632 |
| BsuRI | GGCC | 4 cut(s) | 79, 272, 557, 1110 |
| BtsCI | GGATG | 6 cut(s) | 313, 411, 529, 774, 775, 1129 |
| BtsIMutI | CAGTG | 1 cut(s) | 340 |
| Cac8I | GCNNGC | 2 cut(s) | 522, 1038 |
| CciI | TCATGA | 1 cut(s) | 754 |
| Cfr13I | GGNCC | 4 cut(s) | 77, 78, 556, 1108 |
| Csp6I | GTAC | 1 cut(s) | 156 |
| CviAII | CATG | 5 cut(s) | 181, 755, 947, 951, 1082 |
| CviQI | GTAC | 1 cut(s) | 156 |
| DdeI | CTNAG | 3 cut(s) | 42, 664, 866 |
| DpnI | GATC | 2 cut(s) | 634, 1152 |
| DpnII | GATC | 2 cut(s) | 632, 1150 |
| DraI | TTTAAA | 1 cut(s) | 883 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 951 |
| DriI | GACNNNNNGTC | 2 cut(s) | 98, 801 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 951 |
| Eam1104I | CTCTTC | 1 cut(s) | 315 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 98, 801 |
| EarI | CTCTTC | 1 cut(s) | 315 |
| Eco130I | CCWWGG | 4 cut(s) | 66, 273, 416, 1111 |
| Eco24I | GRGCYC | 1 cut(s) | 81 |
| Eco31I | GGTCTC | 1 cut(s) | 85 |
| Eco57I | CTGAAG | 2 cut(s) | 132, 605 |
| Eco88I | CYCGRG | 1 cut(s) | 80 |
| EcoRI | GAATTC | 1 cut(s) | 1090 |
| EcoRII | CCWGG | 3 cut(s) | 124, 536, 571 |
| EcoT14I | CCWWGG | 4 cut(s) | 66, 273, 416, 1111 |
| EcoT22I | ATGCAT | 2 cut(s) | 952, 1131 |
| EcoT38I | GRGCYC | 1 cut(s) | 81 |
| ErhI | CCWWGG | 4 cut(s) | 66, 273, 416, 1111 |
| Esp3I | CGTCTC | 1 cut(s) | 788 |
| FaeI | CATG | 5 cut(s) | 184, 758, 950, 954, 1085 |
| FaqI | GGGAC | 2 cut(s) | 939, 957 |
| FatI | CATG | 5 cut(s) | 180, 754, 946, 950, 1081 |
| FblI | GTMKAC | 1 cut(s) | 823 |
| Fnu4HI | GCNGC | 4 cut(s) | 11, 745, 748, 888 |
| FokI | GGATG | 6 cut(s) | 320, 418, 516, 761, 782, 1116 |
| FriOI | GRGCYC | 1 cut(s) | 81 |
| Fsp4HI | GCNGC | 4 cut(s) | 11, 745, 748, 888 |
| FspBI | CTAG | 4 cut(s) | 384, 626, 735, 1044 |
| GluI | GCNGC | 4 cut(s) | 11, 745, 748, 888 |
| HaeIII | GGCC | 4 cut(s) | 79, 272, 557, 1110 |
| HapII | CCGG | 2 cut(s) | 958, 1133 |
| Hin1II | CATG | 5 cut(s) | 184, 758, 950, 954, 1085 |
| HindIII | AAGCTT | 2 cut(s) | 617, 1157 |
| HinfI | GANTC | 5 cut(s) | 20, 38, 99, 611, 895 |
| HpaII | CCGG | 2 cut(s) | 958, 1133 |
| HphI | GGTGA | 2 cut(s) | 799, 980 |
| Hpy166II | GTNNAC | 2 cut(s) | 134, 824 |
| Hpy188I | TCNGA | 7 cut(s) | 43, 301, 484, 510, 667, 779, 869 |
| Hpy188III | TCNNGA | 7 cut(s) | 27, 113, 230, 314, 755, 901, 1133 |
| Hpy8I | GTNNAC | 2 cut(s) | 134, 824 |
| HpyAV | CCTTC | 7 cut(s) | 538, 543, 761, 845, 864, 898, 902 |
| HpyCH4III | ACNGT | 3 cut(s) | 138, 187, 335 |
| HpyCH4IV | ACGT | 2 cut(s) | 412, 797 |
| HpyF3I | CTNAG | 3 cut(s) | 42, 664, 866 |
| HpySE526I | ACGT | 2 cut(s) | 412, 797 |
| Hsp92II | CATG | 5 cut(s) | 184, 758, 950, 954, 1085 |
| Kpn2I | TCCGGA | 1 cut(s) | 1132 |
| Kzo9I | GATC | 2 cut(s) | 632, 1150 |
| LguI | GCTCTTC | 1 cut(s) | 315 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 756, 759, 874 |
| LweI | GCATC | 7 cut(s) | 533, 631, 760, 1023, 1064, 1116, 1138 |
| MaeI | CTAG | 4 cut(s) | 384, 626, 735, 1044 |
| MaeII | ACGT | 2 cut(s) | 412, 797 |
| MaeIII | GTNAC | 2 cut(s) | 113, 787 |
| MalI | GATC | 2 cut(s) | 634, 1152 |
| MboI | GATC | 2 cut(s) | 632, 1150 |
| MboII | GAAGA | 7 cut(s) | 69, 332, 476, 479, 724, 1042, 1160 |
| MfeI | CAATTG | 1 cut(s) | 33 |
| MflI | RGATCY | 1 cut(s) | 632 |
| MhlI | GDGCHC | 1 cut(s) | 81 |
| MluCI | AATT | 7 cut(s) | 33, 338, 442, 491, 504, 877, 1090 |
| MlyI | GAGTC | 1 cut(s) | 108 |
| Mph1103I | ATGCAT | 2 cut(s) | 952, 1131 |
| MroI | TCCGGA | 1 cut(s) | 1132 |
| MroXI | GAANNNNTTC | 2 cut(s) | 225, 324 |
| MseI | TTAA | 3 cut(s) | 882, 969, 1162 |
| MslI | CAYNNNNRTG | 4 cut(s) | 173, 185, 244, 333 |
| MspI | CCGG | 2 cut(s) | 958, 1133 |
| MspR9I | CCNGG | 4 cut(s) | 126, 538, 573, 958 |
| MunI | CAATTG | 1 cut(s) | 33 |
| MvaI | CCWGG | 3 cut(s) | 126, 538, 573 |
| NciI | CCSGG | 1 cut(s) | 958 |
| NdeII | GATC | 2 cut(s) | 632, 1150 |
| NlaIII | CATG | 5 cut(s) | 184, 758, 950, 954, 1085 |
| NlaIV | GGNNCC | 2 cut(s) | 79, 1143 |
| NmuCI | GTSAC | 2 cut(s) | 113, 787 |
| NsiI | ATGCAT | 2 cut(s) | 952, 1131 |
| NspI | RCATGY | 2 cut(s) | 950, 954 |
| OliI | CACNNNNGTG | 1 cut(s) | 333 |
| PagI | TCATGA | 1 cut(s) | 754 |
| PciSI | GCTCTTC | 1 cut(s) | 315 |
| PdmI | GAANNNNTTC | 2 cut(s) | 225, 324 |
| PfeI | GAWTC | 4 cut(s) | 20, 38, 611, 895 |
| PkrI | GCNGC | 4 cut(s) | 12, 746, 749, 889 |
| PleI | GAGTC | 1 cut(s) | 107 |
| PpsI | GAGTC | 1 cut(s) | 107 |
| Psp6I | CCWGG | 3 cut(s) | 124, 536, 571 |
| PspGI | CCWGG | 3 cut(s) | 124, 536, 571 |
| PspN4I | GGNNCC | 2 cut(s) | 79, 1143 |
| PspOMI | GGGCCC | 1 cut(s) | 77 |
| PspPI | GGNCC | 4 cut(s) | 77, 78, 556, 1108 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 210, 242 |
| PsuI | RGATCY | 1 cut(s) | 632 |
| RsaI | GTAC | 1 cut(s) | 157 |
| RsaNI | GTAC | 1 cut(s) | 156 |
| RseI | CAYNNNNRTG | 4 cut(s) | 173, 185, 244, 333 |
| SapI | GCTCTTC | 1 cut(s) | 315 |
| SaqAI | TTAA | 3 cut(s) | 882, 969, 1162 |
| SatI | GCNGC | 4 cut(s) | 11, 745, 748, 888 |
| Sau3AI | GATC | 2 cut(s) | 632, 1150 |
| Sau96I | GGNCC | 4 cut(s) | 77, 78, 556, 1108 |
| SchI | GAGTC | 1 cut(s) | 108 |
| ScrFI | CCNGG | 4 cut(s) | 126, 538, 573, 958 |
| SduI | GDGCHC | 1 cut(s) | 81 |
| SfaNI | GCATC | 7 cut(s) | 533, 631, 760, 1023, 1064, 1116, 1138 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 173, 185, 244, 333 |
| SmlI | CTYRAG | 3 cut(s) | 357, 899, 996 |
| SmoI | CTYRAG | 3 cut(s) | 357, 899, 996 |
| SpeI | ACTAGT | 1 cut(s) | 1043 |
| Sse9I | AATT | 7 cut(s) | 33, 338, 442, 491, 504, 877, 1090 |
| SspI | AATATT | 2 cut(s) | 694, 973 |
| SspMI | CTAG | 4 cut(s) | 384, 626, 735, 1044 |
| StyD4I | CCNGG | 4 cut(s) | 124, 536, 571, 956 |
| StyI | CCWWGG | 4 cut(s) | 66, 273, 416, 1111 |
| TaaI | ACNGT | 3 cut(s) | 138, 187, 335 |
| TaiI | ACGT | 2 cut(s) | 415, 800 |
| TaqI | TCGA | 3 cut(s) | 26, 267, 740 |
| TasI | AATT | 7 cut(s) | 33, 338, 442, 491, 504, 877, 1090 |
| TfiI | GAWTC | 4 cut(s) | 20, 38, 611, 895 |
| Tru1I | TTAA | 3 cut(s) | 882, 969, 1162 |
| Tru9I | TTAA | 3 cut(s) | 882, 969, 1162 |
| TscAI | CASTG | 1 cut(s) | 340 |
| TseFI | GTSAC | 2 cut(s) | 113, 787 |
| TseI | GCWGC | 4 cut(s) | 10, 744, 747, 887 |
| Tsp45I | GTSAC | 2 cut(s) | 113, 787 |
| TspDTI | ATGAA | 4 cut(s) | 300, 333, 686, 743 |
| TspGWI | ACGGA | 1 cut(s) | 782 |
| TspRI | CASTG | 1 cut(s) | 340 |
| XapI | RAATTY | 1 cut(s) | 1090 |
| XceI | RCATGY | 2 cut(s) | 950, 954 |
| XmiI | GTMKAC | 1 cut(s) | 823 |
| XmnI | GAANNNNTTC | 2 cut(s) | 225, 324 |
| XspI | CTAG | 4 cut(s) | 384, 626, 735, 1044 |
| Zsp2I | ATGCAT | 2 cut(s) | 952, 1131 |