Rorug07G0305800

GEM-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000452
Physical Location & Seq
Forward (+)
30623557 .. 30630895
7339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0305800.1

Sequence Viewer

Length: 276 bp
ATGTTTCTCCAAAAAAATCAAAAGACGGAAAACATGCTGAAACTGCAGAAGCTGGATCCTCCTCGAGCAAGTGGAAATGACGCTGAAACTTCAGGAGCTGGACCATTAAGCAAGGATGTGTCCCTACAAACTGATGCAAGATGTGTAAATGATGCTGAGTCATCAGGAGCTGGACTTTCCTCAAGCAAGGTTGCTTCTGTAGAAAATGAACCAAGTGGTGGAAGTGAGGTTGAAACATCAGGACCTGTACCCTCTTCCTTAAGCAAGGTTTCTTGA

Protein Analysis

91

Amino Acids

9.32

Weight (kDa)

4.79

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 218
AclWI GGATC 2 cut(s) 50, 63
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 1 cut(s) 249
AfiI CCNNNNNNNGG 1 cut(s) 218
AflII CTTAAG 1 cut(s) 259
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 3 cut(s) 52, 98, 170
AluI AGCT 3 cut(s) 52, 98, 170
AlwI GGATC 2 cut(s) 50, 63
AlwNI CAGNNNCTG 4 cut(s) 52, 98, 170, 245
Ama87I CYCGRG 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 101, 242
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 101, 242
BamHI GGATCC 1 cut(s) 55
BfmI CTRYAG 2 cut(s) 44, 198
BfrI CTTAAG 1 cut(s) 259
Bme18I GGWCC 2 cut(s) 101, 242
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 101, 242
BmiI GGNNCC 1 cut(s) 57
BmsI GCATC 2 cut(s) 124, 142
BpuEI CTTGAG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 106
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 63
Bsp143I GATC 1 cut(s) 55
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 48
BspPI GGATC 2 cut(s) 50, 63
BspTI CTTAAG 1 cut(s) 259
BssMI GATC 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 259
BstAFI CTTAAG 1 cut(s) 259
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 1 cut(s) 58
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 37
BstSFI CTRYAG 2 cut(s) 44, 198
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BtsCI GGATG 1 cut(s) 121
CaiI CAGNNNCTG 4 cut(s) 52, 98, 170, 245
Cfr13I GGNCC 2 cut(s) 101, 242
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 248
CviAII CATG 1 cut(s) 34
CviJI RGCY 3 cut(s) 52, 98, 170
CviKI_1 RGCY 3 cut(s) 52, 98, 170
CviQI GTAC 1 cut(s) 248
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 101, 242
Eco57I CTGAAG 1 cut(s) 75
Eco88I CYCGRG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 242
FaeI CATG 1 cut(s) 37
FaiI YATR 1 cut(s) 35
FaqI GGGAC 1 cut(s) 106
FatI CATG 1 cut(s) 33
FokI GGATG 1 cut(s) 128
HgaI GACGC 1 cut(s) 89
Hin1II CATG 1 cut(s) 37
HinfI GANTC 1 cut(s) 158
Hpy188III TCNNGA 4 cut(s) 93, 165, 240, 273
HpyCH4V TGCA 2 cut(s) 46, 137
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 1 cut(s) 37
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 2 cut(s) 95, 167
LpnPI CCDG 7 cut(s) 38, 78, 84, 150, 156, 225, 258
LweI GCATC 2 cut(s) 124, 142
MalI GATC 1 cut(s) 57
MboI GATC 1 cut(s) 55
MboII GAAGA 1 cut(s) 246
MflI RGATCY 1 cut(s) 55
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 5 cut(s) 69, 72, 190, 220, 262
MseI TTAA 2 cut(s) 107, 260
MspCI CTTAAG 1 cut(s) 259
MwoI GCNNNNNNNGC 1 cut(s) 43
NdeII GATC 1 cut(s) 55
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 57
NspI RCATGY 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 63
PflMI CCANNNNNTGG 1 cut(s) 218
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 2 cut(s) 101, 242
PspPPI RGGWCCY 1 cut(s) 242
PspXI VCTCGAGB 1 cut(s) 63
PstI CTGCAG 1 cut(s) 48
PstNI CAGNNNCTG 4 cut(s) 52, 98, 170, 245
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 249
RsaNI GTAC 1 cut(s) 248
SaqAI TTAA 2 cut(s) 107, 260
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 101, 242
SchI GAGTC 1 cut(s) 167
SetI ASST 7 cut(s) 54, 100, 172, 192, 231, 247, 270
SfaNI GCATC 2 cut(s) 124, 142
SfcI CTRYAG 2 cut(s) 44, 198
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 2 cut(s) 101, 242
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 3 cut(s) 63, 181, 259
SmoI CTYRAG 3 cut(s) 63, 181, 259
TaqI TCGA 1 cut(s) 64
Tru1I TTAA 2 cut(s) 107, 260
Tru9I TTAA 2 cut(s) 107, 260
TspDTI ATGAA 1 cut(s) 222
TspGWI ACGGA 1 cut(s) 41
Van91I CCANNNNNTGG 1 cut(s) 218
Vha464I CTTAAG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 101, 242
XceI RCATGY 1 cut(s) 37
XhoI CTCGAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.