Homeodomain
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_28 | PF00295 | 31 - 361 | 1.9e-96 | Glycosyl hydrolases family 28 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 466 |
| AciI | CCGC | 2 cut(s) | 544, 639 |
| AclWI | GGATC | 1 cut(s) | 254 |
| AcoI | YGGCCR | 2 cut(s) | 123, 301 |
| AcsI | RAATTY | 2 cut(s) | 594, 708 |
| AfaI | GTAC | 1 cut(s) | 292 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 170, 318, 466, 650, 1040 |
| AgsI | TTSAA | 9 cut(s) | 10, 35, 70, 136, 266, 424, 445, 793, 801 |
| AhlI | ACTAGT | 1 cut(s) | 215 |
| AjnI | CCWGG | 1 cut(s) | 303 |
| AluBI | AGCT | 3 cut(s) | 29, 359, 1055 |
| AluI | AGCT | 3 cut(s) | 29, 359, 1055 |
| Alw26I | GTCTC | 2 cut(s) | 327, 566 |
| AlwI | GGATC | 1 cut(s) | 254 |
| Ama87I | CYCGRG | 1 cut(s) | 771 |
| AoxI | GGCC | 3 cut(s) | 123, 180, 301 |
| ApeKI | GCWGC | 2 cut(s) | 984, 1055 |
| ApoI | RAATTY | 2 cut(s) | 594, 708 |
| AspS9I | GGNCC | 2 cut(s) | 161, 641 |
| AsuC2I | CCSGG | 3 cut(s) | 283, 348, 645 |
| AvaI | CYCGRG | 1 cut(s) | 771 |
| AvaII | GGWCC | 2 cut(s) | 161, 641 |
| AxyI | CCTNAGG | 1 cut(s) | 498 |
| BanII | GRGCYC | 1 cut(s) | 772 |
| BbsI | GAAGAC | 1 cut(s) | 948 |
| BbvI | GCAGC | 2 cut(s) | 996, 1042 |
| BccI | CCATC | 6 cut(s) | 92, 229, 460, 512, 1009, 1076 |
| BceAI | ACGGC | 1 cut(s) | 316 |
| BciT130I | CCWGG | 1 cut(s) | 305 |
| BcnI | CCSGG | 3 cut(s) | 283, 348, 645 |
| BcoDI | GTCTC | 2 cut(s) | 327, 566 |
| BcuI | ACTAGT | 1 cut(s) | 215 |
| BfaI | CTAG | 3 cut(s) | 216, 590, 1116 |
| BfmI | CTRYAG | 1 cut(s) | 276 |
| BisI | GCNGC | 2 cut(s) | 985, 1056 |
| BlsI | GCNGC | 2 cut(s) | 986, 1057 |
| Bme1390I | CCNGG | 4 cut(s) | 283, 305, 348, 645 |
| Bme18I | GGWCC | 2 cut(s) | 161, 641 |
| BmeT110I | CYCGRG | 1 cut(s) | 771 |
| BmgT120I | GGNCC | 2 cut(s) | 161, 641 |
| BmiI | GGNNCC | 5 cut(s) | 310, 495, 643, 949, 1045 |
| BmrFI | CCNGG | 4 cut(s) | 283, 305, 348, 645 |
| BmrI | ACTGGG | 1 cut(s) | 140 |
| BmsI | GCATC | 5 cut(s) | 6, 341, 446, 555, 669 |
| BmuI | ACTGGG | 1 cut(s) | 140 |
| BpiI | GAAGAC | 1 cut(s) | 948 |
| BpuEI | CTTGAG | 1 cut(s) | 433 |
| BpuMI | CCSGG | 3 cut(s) | 283, 348, 645 |
| Bsa29I | ATCGAT | 1 cut(s) | 855 |
| BsaI | GGTCTC | 2 cut(s) | 327, 566 |
| BsaJI | CCNNGG | 3 cut(s) | 282, 304, 312 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 300, 330 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 170, 318, 466, 650, 1040 |
| Bse118I | RCCGGY | 1 cut(s) | 575 |
| Bse1I | ACTGG | 2 cut(s) | 146, 1045 |
| Bse21I | CCTNAGG | 1 cut(s) | 498 |
| BseBI | CCWGG | 1 cut(s) | 305 |
| BseCI | ATCGAT | 1 cut(s) | 855 |
| BseDI | CCNNGG | 3 cut(s) | 282, 304, 312 |
| BseGI | GGATG | 3 cut(s) | 103, 356, 461 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 170, 318, 466, 650, 1040 |
| BseMII | CTCAG | 2 cut(s) | 171, 489 |
| BseNI | ACTGG | 2 cut(s) | 146, 1045 |
| BseX3I | CGGCCG | 1 cut(s) | 123 |
| BseXI | GCAGC | 2 cut(s) | 996, 1042 |
| Bsh1285I | CGRYCG | 1 cut(s) | 126 |
| BshFI | GGCC | 3 cut(s) | 125, 182, 303 |
| BshVI | ATCGAT | 1 cut(s) | 855 |
| BsiEI | CGRYCG | 1 cut(s) | 126 |
| BsiHKCI | CYCGRG | 1 cut(s) | 771 |
| BsiSI | CCGG | 6 cut(s) | 122, 126, 282, 348, 576, 645 |
| BslFI | GGGAC | 1 cut(s) | 627 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 170, 318, 466, 650, 1040 |
| BsmAI | GTCTC | 2 cut(s) | 327, 566 |
| BsmFI | GGGAC | 1 cut(s) | 627 |
| BsnI | GGCC | 3 cut(s) | 125, 182, 303 |
| Bso31I | GGTCTC | 2 cut(s) | 327, 566 |
| BsoBI | CYCGRG | 1 cut(s) | 771 |
| Bsp1286I | GDGCHC | 1 cut(s) | 772 |
| Bsp143I | GATC | 4 cut(s) | 246, 416, 564, 856 |
| BspACI | CCGC | 2 cut(s) | 544, 639 |
| BspANI | GGCC | 3 cut(s) | 125, 182, 303 |
| BspCNI | CTCAG | 2 cut(s) | 170, 490 |
| BspDI | ATCGAT | 1 cut(s) | 855 |
| BspLI | GGNNCC | 5 cut(s) | 310, 495, 643, 949, 1045 |
| BspPI | GGATC | 1 cut(s) | 254 |
| BspQI | GCTCTTC | 1 cut(s) | 97 |
| BspTNI | GGTCTC | 2 cut(s) | 327, 566 |
| BsrFI | RCCGGY | 1 cut(s) | 575 |
| BsrI | ACTGG | 2 cut(s) | 146, 1045 |
| BssAI | RCCGGY | 1 cut(s) | 575 |
| BssECI | CCNNGG | 3 cut(s) | 282, 304, 312 |
| BssMI | GATC | 4 cut(s) | 246, 416, 564, 856 |
| Bst2UI | CCWGG | 1 cut(s) | 305 |
| Bst4CI | ACNGT | 2 cut(s) | 277, 506 |
| Bst6I | CTCTTC | 1 cut(s) | 97 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 999 |
| BstC8I | GCNNGC | 1 cut(s) | 995 |
| BstDEI | CTNAG | 2 cut(s) | 157, 498 |
| BstF5I | GGATG | 3 cut(s) | 103, 356, 461 |
| BstKTI | GATC | 4 cut(s) | 249, 419, 567, 859 |
| BstMAI | GTCTC | 2 cut(s) | 327, 566 |
| BstMBI | GATC | 4 cut(s) | 246, 416, 564, 856 |
| BstMCI | CGRYCG | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 990, 999 |
| BstNI | CCWGG | 1 cut(s) | 305 |
| BstNSI | RCATGY | 1 cut(s) | 90 |
| BstSCI | CCNGG | 4 cut(s) | 281, 303, 346, 643 |
| BstSFI | CTRYAG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 2 cut(s) | 996, 1042 |
| BstV2I | GAAGAC | 1 cut(s) | 948 |
| BstZI | CGGCCG | 1 cut(s) | 123 |
| Bsu15I | ATCGAT | 1 cut(s) | 855 |
| Bsu36I | CCTNAGG | 1 cut(s) | 498 |
| BsuRI | GGCC | 3 cut(s) | 125, 182, 303 |
| BsuTUI | ATCGAT | 1 cut(s) | 855 |
| BtgZI | GCGATG | 2 cut(s) | 594, 936 |
| BtsCI | GGATG | 3 cut(s) | 103, 356, 461 |
| BtsI | GCAGTG | 1 cut(s) | 975 |
| BtsIMutI | CAGTG | 1 cut(s) | 975 |
| Cac8I | GCNNGC | 1 cut(s) | 995 |
| Cfr10I | RCCGGY | 1 cut(s) | 575 |
| Cfr13I | GGNCC | 2 cut(s) | 161, 641 |
| ClaI | ATCGAT | 1 cut(s) | 855 |
| Csp6I | GTAC | 1 cut(s) | 291 |
| CviAII | CATG | 9 cut(s) | 75, 87, 165, 178, 452, 650, 765, 826, 999 |
| CviQI | GTAC | 1 cut(s) | 291 |
| DdeI | CTNAG | 2 cut(s) | 157, 498 |
| DpnI | GATC | 4 cut(s) | 248, 418, 566, 858 |
| DpnII | GATC | 4 cut(s) | 246, 416, 564, 856 |
| DraI | TTTAAA | 1 cut(s) | 732 |
| EaeI | YGGCCR | 2 cut(s) | 123, 301 |
| EagI | CGGCCG | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 1 cut(s) | 97 |
| EarI | CTCTTC | 1 cut(s) | 97 |
| EclXI | CGGCCG | 1 cut(s) | 123 |
| Eco24I | GRGCYC | 1 cut(s) | 772 |
| Eco31I | GGTCTC | 2 cut(s) | 327, 566 |
| Eco47I | GGWCC | 2 cut(s) | 161, 641 |
| Eco52I | CGGCCG | 1 cut(s) | 123 |
| Eco81I | CCTNAGG | 1 cut(s) | 498 |
| Eco88I | CYCGRG | 1 cut(s) | 771 |
| EcoRII | CCWGG | 1 cut(s) | 303 |
| EcoT38I | GRGCYC | 1 cut(s) | 772 |
| FaeI | CATG | 9 cut(s) | 78, 90, 168, 181, 455, 653, 768, 829, 1002 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 455, 487 |
| FaqI | GGGAC | 1 cut(s) | 627 |
| FatI | CATG | 9 cut(s) | 74, 86, 164, 177, 451, 649, 764, 825, 998 |
| FauNDI | CATATG | 1 cut(s) | 941 |
| Fnu4HI | GCNGC | 2 cut(s) | 985, 1056 |
| FokI | GGATG | 3 cut(s) | 110, 363, 468 |
| FriOI | GRGCYC | 1 cut(s) | 772 |
| Fsp4HI | GCNGC | 2 cut(s) | 985, 1056 |
| FspBI | CTAG | 3 cut(s) | 216, 590, 1116 |
| GluI | GCNGC | 2 cut(s) | 985, 1056 |
| HaeIII | GGCC | 3 cut(s) | 125, 182, 303 |
| HapII | CCGG | 6 cut(s) | 122, 126, 282, 348, 576, 645 |
| Hin1II | CATG | 9 cut(s) | 78, 90, 168, 181, 455, 653, 768, 829, 1002 |
| HinfI | GANTC | 5 cut(s) | 118, 756, 776, 841, 973 |
| HpaII | CCGG | 6 cut(s) | 122, 126, 282, 348, 576, 645 |
| Hpy188I | TCNGA | 8 cut(s) | 238, 258, 476, 551, 665, 873, 935, 978 |
| Hpy188III | TCNNGA | 4 cut(s) | 497, 603, 773, 838 |
| Hpy99I | CGWCG | 1 cut(s) | 1063 |
| HpyAV | CCTTC | 2 cut(s) | 29, 787 |
| HpyCH4III | ACNGT | 2 cut(s) | 277, 506 |
| HpyCH4V | TGCA | 9 cut(s) | 168, 336, 354, 398, 885, 913, 984, 1002, 1122 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 990, 999 |
| HpyF3I | CTNAG | 2 cut(s) | 157, 498 |
| Hsp92II | CATG | 9 cut(s) | 78, 90, 168, 181, 455, 653, 768, 829, 1002 |
| Kzo9I | GATC | 4 cut(s) | 246, 416, 564, 856 |
| LguI | GCTCTTC | 1 cut(s) | 97 |
| LmnI | GCTCC | 4 cut(s) | 26, 308, 499, 1052 |
| Lsp1109I | GCAGC | 2 cut(s) | 996, 1042 |
| LweI | GCATC | 5 cut(s) | 6, 341, 446, 555, 669 |
| MaeI | CTAG | 3 cut(s) | 216, 590, 1116 |
| MaeIII | GTNAC | 5 cut(s) | 173, 388, 925, 970, 1029 |
| MalI | GATC | 4 cut(s) | 248, 418, 566, 858 |
| MboI | GATC | 4 cut(s) | 246, 416, 564, 856 |
| MboII | GAAGA | 6 cut(s) | 54, 114, 475, 827, 891, 948 |
| MhlI | GDGCHC | 1 cut(s) | 772 |
| MluCI | AATT | 6 cut(s) | 241, 269, 552, 594, 654, 708 |
| MlyI | GAGTC | 1 cut(s) | 967 |
| MnlI | CCTC | 9 cut(s) | 32, 281, 322, 493, 668, 697, 961, 1044, 1122 |
| MseI | TTAA | 4 cut(s) | 272, 327, 731, 822 |
| MslI | CAYNNNNRTG | 1 cut(s) | 91 |
| MspI | CCGG | 6 cut(s) | 122, 126, 282, 348, 576, 645 |
| MspR9I | CCNGG | 4 cut(s) | 283, 305, 348, 645 |
| MvaI | CCWGG | 1 cut(s) | 305 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 990, 999 |
| NciI | CCSGG | 3 cut(s) | 283, 348, 645 |
| NdeI | CATATG | 1 cut(s) | 941 |
| NdeII | GATC | 4 cut(s) | 246, 416, 564, 856 |
| NlaIII | CATG | 9 cut(s) | 78, 90, 168, 181, 455, 653, 768, 829, 1002 |
| NlaIV | GGNNCC | 5 cut(s) | 310, 495, 643, 949, 1045 |
| NmuCI | GTSAC | 1 cut(s) | 970 |
| NspI | RCATGY | 1 cut(s) | 90 |
| PciSI | GCTCTTC | 1 cut(s) | 97 |
| PfeI | GAWTC | 4 cut(s) | 118, 756, 776, 841 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 466 |
| PfoI | TCCNGGA | 2 cut(s) | 346, 643 |
| PkrI | GCNGC | 2 cut(s) | 986, 1057 |
| PleI | GAGTC | 1 cut(s) | 967 |
| PpsI | GAGTC | 1 cut(s) | 967 |
| Psp6I | CCWGG | 1 cut(s) | 303 |
| PspGI | CCWGG | 1 cut(s) | 303 |
| PspN4I | GGNNCC | 5 cut(s) | 310, 495, 643, 949, 1045 |
| PspPI | GGNCC | 2 cut(s) | 161, 641 |
| RsaI | GTAC | 1 cut(s) | 292 |
| RsaNI | GTAC | 1 cut(s) | 291 |
| RseI | CAYNNNNRTG | 1 cut(s) | 91 |
| SapI | GCTCTTC | 1 cut(s) | 97 |
| SaqAI | TTAA | 4 cut(s) | 272, 327, 731, 822 |
| SatI | GCNGC | 2 cut(s) | 985, 1056 |
| Sau3AI | GATC | 4 cut(s) | 246, 416, 564, 856 |
| Sau96I | GGNCC | 2 cut(s) | 161, 641 |
| SchI | GAGTC | 1 cut(s) | 967 |
| ScrFI | CCNGG | 4 cut(s) | 283, 305, 348, 645 |
| SduI | GDGCHC | 1 cut(s) | 772 |
| SetI | ASST | 9 cut(s) | 31, 114, 163, 292, 361, 450, 953, 1036, 1057 |
| SfaNI | GCATC | 5 cut(s) | 6, 341, 446, 555, 669 |
| SfcI | CTRYAG | 1 cut(s) | 276 |
| SinI | GGWCC | 2 cut(s) | 161, 641 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 91 |
| SmlI | CTYRAG | 1 cut(s) | 412 |
| SmoI | CTYRAG | 1 cut(s) | 412 |
| SpeI | ACTAGT | 1 cut(s) | 215 |
| Sse9I | AATT | 6 cut(s) | 241, 269, 552, 594, 654, 708 |
| SsiI | CCGC | 2 cut(s) | 544, 639 |
| SspI | AATATT | 2 cut(s) | 805, 866 |
| SspMI | CTAG | 3 cut(s) | 216, 590, 1116 |
| StyD4I | CCNGG | 4 cut(s) | 281, 303, 346, 643 |
| TaaI | ACNGT | 2 cut(s) | 277, 506 |
| TaqI | TCGA | 3 cut(s) | 371, 381, 855 |
| TasI | AATT | 6 cut(s) | 241, 269, 552, 594, 654, 708 |
| TfiI | GAWTC | 4 cut(s) | 118, 756, 776, 841 |
| Tru1I | TTAA | 4 cut(s) | 272, 327, 731, 822 |
| Tru9I | TTAA | 4 cut(s) | 272, 327, 731, 822 |
| TscAI | CASTG | 1 cut(s) | 975 |
| TseFI | GTSAC | 1 cut(s) | 970 |
| TseI | GCWGC | 2 cut(s) | 984, 1055 |
| Tsp45I | GTSAC | 1 cut(s) | 970 |
| TspDTI | ATGAA | 4 cut(s) | 395, 440, 828, 891 |
| TspRI | CASTG | 1 cut(s) | 975 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 466 |
| VpaK11BI | GGWCC | 2 cut(s) | 161, 641 |
| XapI | RAATTY | 2 cut(s) | 594, 708 |
| XceI | RCATGY | 1 cut(s) | 90 |
| XspI | CTAG | 3 cut(s) | 216, 590, 1116 |