Rorug05G0018100

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
1211067 .. 1212987
1921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0018100.1

Sequence Viewer

Length: 1128 bp
ATGGTTTTCAATGTGATGCGTTATGGAGCTATTGAAGGAGGAAGAACTGATAATAGTCAGGCATTTTTGAAAGCATGGAGTGAAGCATGTAAATGGGATGGAAGAGCAAAGGTTGTGATTCCGGCCGGAACATTCAAGTTGTTCCCAGTTGTATTCTCAGGTCCATGCAAGGGTAACATGGCCTTTGTAATCAAGGGAACTTTGTTGGCTTCTACTAGTCCATCAGCATTGAGTTCTGAAAATTGGATCAACTTTCGGAACATTGAACAATTAACTGTAGCCGGGGGAGGTACGCTGGACGGCCAGGGAGCCTCGGTTTGGTCTCTTAACGATTGCAAAACTAATCCCGGATGCAAAGCTCTCCCAACTTCGATGACTTTCGACTTCGTAACAAATGCAAGTGTTCATCACTTGAGATCATTCAACAGCCAAAATGGTCATTTCAAGGTTCATGGATGCCAGAAGATGGACTTCGGAAACATTAGAATATCGGCTCCTGAGGACAGTCCAAACACCGATGGCATAAAGATTGGAAACTCATACCGCATCAGAATTAGACGAACGATCATTGAGACCGGCGATGATTGTCTAGGAATTTTGTCGGGAAGTCAAAAAATCCACATTTCTAATGTCTTTTGCGGTCCCGGACATGGAATTAGCATCGGAAGTCTTGGAGGGCATAGTTATACAGAATATGATGTGGAGGGAATTTTTGTGAAAAATAGCGTTTTAAAAAAGACTGATAATGGTTTGAGAATCAAAACATGGGCTCGGGATTCTCCAAAACCATTGAAGGCTTCAAATATTGTGTATGAAGATATTAACATGATTGATGTCAAGAATCCCATTGTCATCGATCAACAATATTGTCCGAACAATCAATGCAATCAACAGGCTTCTTCATCAAATGTGCAAATCAGCGATGTTACATTCAGAAACATATGGGGAACCTCGTCTTCCCAAGAAGCAGTGACTCTGAAATGCAGCAAAAGCAAGCCATGCAAGAATATAGTGATGGAGAATATCAAGTTACCTCATACTGGTTCCAAAGGAGCTGCGACGACTTCCATCTGTAATAATGTCATCGGCAACTCTTATGGCTCACACATTCCTCCTAGTTGCATATAA

Protein Analysis

375

Amino Acids

40.61

Weight (kDa)

8.97

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 31 - 361 1.9e-96 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AciI CCGC 2 cut(s) 544, 639
AclWI GGATC 1 cut(s) 254
AcoI YGGCCR 2 cut(s) 123, 301
AcsI RAATTY 2 cut(s) 594, 708
AfaI GTAC 1 cut(s) 292
AfiI CCNNNNNNNGG 5 cut(s) 170, 318, 466, 650, 1040
AgsI TTSAA 9 cut(s) 10, 35, 70, 136, 266, 424, 445, 793, 801
AhlI ACTAGT 1 cut(s) 215
AjnI CCWGG 1 cut(s) 303
AluBI AGCT 3 cut(s) 29, 359, 1055
AluI AGCT 3 cut(s) 29, 359, 1055
Alw26I GTCTC 2 cut(s) 327, 566
AlwI GGATC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 3 cut(s) 123, 180, 301
ApeKI GCWGC 2 cut(s) 984, 1055
ApoI RAATTY 2 cut(s) 594, 708
AspS9I GGNCC 2 cut(s) 161, 641
AsuC2I CCSGG 3 cut(s) 283, 348, 645
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 2 cut(s) 161, 641
AxyI CCTNAGG 1 cut(s) 498
BanII GRGCYC 1 cut(s) 772
BbsI GAAGAC 1 cut(s) 948
BbvI GCAGC 2 cut(s) 996, 1042
BccI CCATC 6 cut(s) 92, 229, 460, 512, 1009, 1076
BceAI ACGGC 1 cut(s) 316
BciT130I CCWGG 1 cut(s) 305
BcnI CCSGG 3 cut(s) 283, 348, 645
BcoDI GTCTC 2 cut(s) 327, 566
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 3 cut(s) 216, 590, 1116
BfmI CTRYAG 1 cut(s) 276
BisI GCNGC 2 cut(s) 985, 1056
BlsI GCNGC 2 cut(s) 986, 1057
Bme1390I CCNGG 4 cut(s) 283, 305, 348, 645
Bme18I GGWCC 2 cut(s) 161, 641
BmeT110I CYCGRG 1 cut(s) 771
BmgT120I GGNCC 2 cut(s) 161, 641
BmiI GGNNCC 5 cut(s) 310, 495, 643, 949, 1045
BmrFI CCNGG 4 cut(s) 283, 305, 348, 645
BmrI ACTGGG 1 cut(s) 140
BmsI GCATC 5 cut(s) 6, 341, 446, 555, 669
BmuI ACTGGG 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 948
BpuEI CTTGAG 1 cut(s) 433
BpuMI CCSGG 3 cut(s) 283, 348, 645
Bsa29I ATCGAT 1 cut(s) 855
BsaI GGTCTC 2 cut(s) 327, 566
BsaJI CCNNGG 3 cut(s) 282, 304, 312
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 5 cut(s) 170, 318, 466, 650, 1040
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 2 cut(s) 146, 1045
Bse21I CCTNAGG 1 cut(s) 498
BseBI CCWGG 1 cut(s) 305
BseCI ATCGAT 1 cut(s) 855
BseDI CCNNGG 3 cut(s) 282, 304, 312
BseGI GGATG 3 cut(s) 103, 356, 461
BseLI CCNNNNNNNGG 5 cut(s) 170, 318, 466, 650, 1040
BseMII CTCAG 2 cut(s) 171, 489
BseNI ACTGG 2 cut(s) 146, 1045
BseX3I CGGCCG 1 cut(s) 123
BseXI GCAGC 2 cut(s) 996, 1042
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 3 cut(s) 125, 182, 303
BshVI ATCGAT 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 6 cut(s) 122, 126, 282, 348, 576, 645
BslFI GGGAC 1 cut(s) 627
BslI CCNNNNNNNGG 5 cut(s) 170, 318, 466, 650, 1040
BsmAI GTCTC 2 cut(s) 327, 566
BsmFI GGGAC 1 cut(s) 627
BsnI GGCC 3 cut(s) 125, 182, 303
Bso31I GGTCTC 2 cut(s) 327, 566
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 772
Bsp143I GATC 4 cut(s) 246, 416, 564, 856
BspACI CCGC 2 cut(s) 544, 639
BspANI GGCC 3 cut(s) 125, 182, 303
BspCNI CTCAG 2 cut(s) 170, 490
BspDI ATCGAT 1 cut(s) 855
BspLI GGNNCC 5 cut(s) 310, 495, 643, 949, 1045
BspPI GGATC 1 cut(s) 254
BspQI GCTCTTC 1 cut(s) 97
BspTNI GGTCTC 2 cut(s) 327, 566
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 2 cut(s) 146, 1045
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 3 cut(s) 282, 304, 312
BssMI GATC 4 cut(s) 246, 416, 564, 856
Bst2UI CCWGG 1 cut(s) 305
Bst4CI ACNGT 2 cut(s) 277, 506
Bst6I CTCTTC 1 cut(s) 97
BstAPI GCANNNNNTGC 1 cut(s) 999
BstC8I GCNNGC 1 cut(s) 995
BstDEI CTNAG 2 cut(s) 157, 498
BstF5I GGATG 3 cut(s) 103, 356, 461
BstKTI GATC 4 cut(s) 249, 419, 567, 859
BstMAI GTCTC 2 cut(s) 327, 566
BstMBI GATC 4 cut(s) 246, 416, 564, 856
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 2 cut(s) 990, 999
BstNI CCWGG 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 4 cut(s) 281, 303, 346, 643
BstSFI CTRYAG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 996, 1042
BstV2I GAAGAC 1 cut(s) 948
BstZI CGGCCG 1 cut(s) 123
Bsu15I ATCGAT 1 cut(s) 855
Bsu36I CCTNAGG 1 cut(s) 498
BsuRI GGCC 3 cut(s) 125, 182, 303
BsuTUI ATCGAT 1 cut(s) 855
BtgZI GCGATG 2 cut(s) 594, 936
BtsCI GGATG 3 cut(s) 103, 356, 461
BtsI GCAGTG 1 cut(s) 975
BtsIMutI CAGTG 1 cut(s) 975
Cac8I GCNNGC 1 cut(s) 995
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 2 cut(s) 161, 641
ClaI ATCGAT 1 cut(s) 855
Csp6I GTAC 1 cut(s) 291
CviAII CATG 9 cut(s) 75, 87, 165, 178, 452, 650, 765, 826, 999
CviQI GTAC 1 cut(s) 291
DdeI CTNAG 2 cut(s) 157, 498
DpnI GATC 4 cut(s) 248, 418, 566, 858
DpnII GATC 4 cut(s) 246, 416, 564, 856
DraI TTTAAA 1 cut(s) 732
EaeI YGGCCR 2 cut(s) 123, 301
EagI CGGCCG 1 cut(s) 123
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 772
Eco31I GGTCTC 2 cut(s) 327, 566
Eco47I GGWCC 2 cut(s) 161, 641
Eco52I CGGCCG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 1 cut(s) 771
EcoRII CCWGG 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 772
FaeI CATG 9 cut(s) 78, 90, 168, 181, 455, 653, 768, 829, 1002
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 627
FatI CATG 9 cut(s) 74, 86, 164, 177, 451, 649, 764, 825, 998
FauNDI CATATG 1 cut(s) 941
Fnu4HI GCNGC 2 cut(s) 985, 1056
FokI GGATG 3 cut(s) 110, 363, 468
FriOI GRGCYC 1 cut(s) 772
Fsp4HI GCNGC 2 cut(s) 985, 1056
FspBI CTAG 3 cut(s) 216, 590, 1116
GluI GCNGC 2 cut(s) 985, 1056
HaeIII GGCC 3 cut(s) 125, 182, 303
HapII CCGG 6 cut(s) 122, 126, 282, 348, 576, 645
Hin1II CATG 9 cut(s) 78, 90, 168, 181, 455, 653, 768, 829, 1002
HinfI GANTC 5 cut(s) 118, 756, 776, 841, 973
HpaII CCGG 6 cut(s) 122, 126, 282, 348, 576, 645
Hpy188I TCNGA 8 cut(s) 238, 258, 476, 551, 665, 873, 935, 978
Hpy188III TCNNGA 4 cut(s) 497, 603, 773, 838
Hpy99I CGWCG 1 cut(s) 1063
HpyAV CCTTC 2 cut(s) 29, 787
HpyCH4III ACNGT 2 cut(s) 277, 506
HpyCH4V TGCA 9 cut(s) 168, 336, 354, 398, 885, 913, 984, 1002, 1122
HpyF10VI GCNNNNNNNGC 2 cut(s) 990, 999
HpyF3I CTNAG 2 cut(s) 157, 498
Hsp92II CATG 9 cut(s) 78, 90, 168, 181, 455, 653, 768, 829, 1002
Kzo9I GATC 4 cut(s) 246, 416, 564, 856
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 4 cut(s) 26, 308, 499, 1052
Lsp1109I GCAGC 2 cut(s) 996, 1042
LweI GCATC 5 cut(s) 6, 341, 446, 555, 669
MaeI CTAG 3 cut(s) 216, 590, 1116
MaeIII GTNAC 5 cut(s) 173, 388, 925, 970, 1029
MalI GATC 4 cut(s) 248, 418, 566, 858
MboI GATC 4 cut(s) 246, 416, 564, 856
MboII GAAGA 6 cut(s) 54, 114, 475, 827, 891, 948
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 6 cut(s) 241, 269, 552, 594, 654, 708
MlyI GAGTC 1 cut(s) 967
MnlI CCTC 9 cut(s) 32, 281, 322, 493, 668, 697, 961, 1044, 1122
MseI TTAA 4 cut(s) 272, 327, 731, 822
MslI CAYNNNNRTG 1 cut(s) 91
MspI CCGG 6 cut(s) 122, 126, 282, 348, 576, 645
MspR9I CCNGG 4 cut(s) 283, 305, 348, 645
MvaI CCWGG 1 cut(s) 305
MwoI GCNNNNNNNGC 2 cut(s) 990, 999
NciI CCSGG 3 cut(s) 283, 348, 645
NdeI CATATG 1 cut(s) 941
NdeII GATC 4 cut(s) 246, 416, 564, 856
NlaIII CATG 9 cut(s) 78, 90, 168, 181, 455, 653, 768, 829, 1002
NlaIV GGNNCC 5 cut(s) 310, 495, 643, 949, 1045
NmuCI GTSAC 1 cut(s) 970
NspI RCATGY 1 cut(s) 90
PciSI GCTCTTC 1 cut(s) 97
PfeI GAWTC 4 cut(s) 118, 756, 776, 841
PflMI CCANNNNNTGG 1 cut(s) 466
PfoI TCCNGGA 2 cut(s) 346, 643
PkrI GCNGC 2 cut(s) 986, 1057
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
Psp6I CCWGG 1 cut(s) 303
PspGI CCWGG 1 cut(s) 303
PspN4I GGNNCC 5 cut(s) 310, 495, 643, 949, 1045
PspPI GGNCC 2 cut(s) 161, 641
RsaI GTAC 1 cut(s) 292
RsaNI GTAC 1 cut(s) 291
RseI CAYNNNNRTG 1 cut(s) 91
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 4 cut(s) 272, 327, 731, 822
SatI GCNGC 2 cut(s) 985, 1056
Sau3AI GATC 4 cut(s) 246, 416, 564, 856
Sau96I GGNCC 2 cut(s) 161, 641
SchI GAGTC 1 cut(s) 967
ScrFI CCNGG 4 cut(s) 283, 305, 348, 645
SduI GDGCHC 1 cut(s) 772
SetI ASST 9 cut(s) 31, 114, 163, 292, 361, 450, 953, 1036, 1057
SfaNI GCATC 5 cut(s) 6, 341, 446, 555, 669
SfcI CTRYAG 1 cut(s) 276
SinI GGWCC 2 cut(s) 161, 641
SmiMI CAYNNNNRTG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 412
SmoI CTYRAG 1 cut(s) 412
SpeI ACTAGT 1 cut(s) 215
Sse9I AATT 6 cut(s) 241, 269, 552, 594, 654, 708
SsiI CCGC 2 cut(s) 544, 639
SspI AATATT 2 cut(s) 805, 866
SspMI CTAG 3 cut(s) 216, 590, 1116
StyD4I CCNGG 4 cut(s) 281, 303, 346, 643
TaaI ACNGT 2 cut(s) 277, 506
TaqI TCGA 3 cut(s) 371, 381, 855
TasI AATT 6 cut(s) 241, 269, 552, 594, 654, 708
TfiI GAWTC 4 cut(s) 118, 756, 776, 841
Tru1I TTAA 4 cut(s) 272, 327, 731, 822
Tru9I TTAA 4 cut(s) 272, 327, 731, 822
TscAI CASTG 1 cut(s) 975
TseFI GTSAC 1 cut(s) 970
TseI GCWGC 2 cut(s) 984, 1055
Tsp45I GTSAC 1 cut(s) 970
TspDTI ATGAA 4 cut(s) 395, 440, 828, 891
TspRI CASTG 1 cut(s) 975
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 2 cut(s) 161, 641
XapI RAATTY 2 cut(s) 594, 708
XceI RCATGY 1 cut(s) 90
XspI CTAG 3 cut(s) 216, 590, 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.