Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

49826080 .. 49828136

Gene Structure 2057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0370500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGATCTGGAGCCTGGGACCATGGACAGCGTCAGATCTGGACACTGCGGTCAGATCTTCCGCCCCGATAATTTTGTCTTCGGTCAGTCTGGTGCTGGAAACAACCGGGCAAATCGTCAGTACACCGAGGGGGCTGAGTTTGATCTATTCGGTTCTCGATGTGGTGCGAAAGGAGGCGGAGAACTGTGGCTGTTGCAAGTTTGTAGGAAGATGACATTTTGGTTTCAAAGAATCACTGGAGTTAGCTTGTGCAGAGGTATTGGAAGCATGTGGTTGAAAACAGACTTAGAAATTGTGGTGGAATCAGATGCAGAAAGCTTAAGTTCAAGGCTGTCTACAGAGGCAGAATTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

118

Amino Acids

13.03

Weight (kDa)

5.11

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	48
AccI	GTMKAC	1 cut(s)	335
AciI	CCGC	3 cut(s)	48, 61, 177
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	227, 277, 327
AjnI	CCWGG	1 cut(s)	13
AluBI	AGCT	2 cut(s)	246, 318
AluI	AGCT	2 cut(s)	246, 318
AlwI	GGATC	1 cut(s)	12
AspS9I	GGNCC	1 cut(s)	18
AsuC2I	CCSGG	1 cut(s)	107
AvaII	GGWCC	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	336
BfrI	CTTAAG	1 cut(s)	319
BglII	AGATCT	2 cut(s)	35, 54
Bme1390I	CCNGG	2 cut(s)	15, 107
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	12, 19
BmrFI	CCNGG	2 cut(s)	15, 107
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	70
BpmI	CTGGAG	2 cut(s)	29, 258
BpuMI	CCSGG	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	14, 21, 126
Bse1I	ACTGG	1 cut(s)	241
BseBI	CCWGG	1 cut(s)	15
BseDI	CCNNGG	3 cut(s)	14, 21, 126
BseMII	CTCAG	1 cut(s)	126
BseNI	ACTGG	1 cut(s)	241
BsgI	GTGCAG	1 cut(s)	271
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	4, 35, 54, 142
Bsp19I	CCATGG	1 cut(s)	21
BspACI	CCGC	3 cut(s)	48, 61, 177
BspCNI	CTCAG	1 cut(s)	127
BspLI	GGNNCC	2 cut(s)	12, 19
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	241
BssECI	CCNNGG	3 cut(s)	14, 21, 126
BssMI	GATC	4 cut(s)	4, 35, 54, 142
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	15
Bst4CI	ACNGT	1 cut(s)	186
BstAFI	CTTAAG	1 cut(s)	319
BstDEI	CTNAG	2 cut(s)	135, 286
BstDSI	CCRYGG	1 cut(s)	21
BstKTI	GATC	4 cut(s)	7, 38, 57, 145
BstMBI	GATC	4 cut(s)	4, 35, 54, 142
BstNI	CCWGG	1 cut(s)	15
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	13, 105
BstSFI	CTRYAG	1 cut(s)	336
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	3 cut(s)	4, 35, 54
BstYI	RGATCY	3 cut(s)	4, 35, 54
BtgI	CCRYGG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	2 cut(s)	43, 234
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	19
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	22, 268
CviJI	RGCY	6 cut(s)	13, 134, 190, 246, 318, 331
CviKI_1	RGCY	6 cut(s)	13, 134, 190, 246, 318, 331
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	135, 286
DpnI	GATC	4 cut(s)	6, 37, 56, 144
DpnII	GATC	4 cut(s)	4, 35, 54, 142
DrdI	GACNNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	48
EciI	GGCGGA	2 cut(s)	50, 192
Eco130I	CCWWGG	1 cut(s)	21
Eco47I	GGWCC	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	2 cut(s)	25, 271
FaiI	YATR	2 cut(s)	23, 269
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	2 cut(s)	21, 267
FblI	GTMKAC	1 cut(s)	335
GsuI	CTGGAG	2 cut(s)	29, 258
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	2 cut(s)	25, 271
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	231, 302
HpaII	CCGG	1 cut(s)	106
Hpy166II	GTNNAC	2 cut(s)	123, 336
Hpy188I	TCNGA	3 cut(s)	35, 54, 307
Hpy188III	TCNNGA	3 cut(s)	8, 39, 156
Hpy8I	GTNNAC	2 cut(s)	123, 336
HpyCH4III	ACNGT	1 cut(s)	186
HpyCH4V	TGCA	3 cut(s)	196, 252, 311
HpyF3I	CTNAG	2 cut(s)	135, 286
Hsp92II	CATG	2 cut(s)	25, 271
Kzo9I	GATC	4 cut(s)	4, 35, 54, 142
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	24, 27, 75, 81, 119, 222
LweI	GCATC	1 cut(s)	298
MalI	GATC	4 cut(s)	6, 37, 56, 144
MboI	GATC	4 cut(s)	4, 35, 54, 142
MboII	GAAGA	3 cut(s)	49, 70, 220
MflI	RGATCY	3 cut(s)	4, 35, 54
MluCI	AATT	4 cut(s)	70, 291, 347, 352
MnlI	CCTC	4 cut(s)	121, 167, 248, 334
MseI	TTAA	3 cut(s)	320, 350, 355
MspCI	CTTAAG	1 cut(s)	319
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	2 cut(s)	15, 107
MvaI	CCWGG	1 cut(s)	15
NciI	CCSGG	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	4 cut(s)	4, 35, 54, 142
NlaIII	CATG	2 cut(s)	25, 271
NlaIV	GGNNCC	2 cut(s)	12, 19
NspI	RCATGY	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	231, 302
PflFI	GACNNNGTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	13
PspGI	CCWGG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	12, 19
PspPI	GGNCC	1 cut(s)	18
PsuI	RGATCY	3 cut(s)	4, 35, 54
PsyI	GACNNNGTC	1 cut(s)	29
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	3 cut(s)	320, 350, 355
Sau3AI	GATC	4 cut(s)	4, 35, 54, 142
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	15, 107
SetI	ASST	3 cut(s)	248, 259, 320
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	18
SmlI	CTYRAG	1 cut(s)	319
SmoI	CTYRAG	1 cut(s)	319
Sse9I	AATT	4 cut(s)	70, 291, 347, 352
SsiI	CCGC	3 cut(s)	48, 61, 177
StyD4I	CCNGG	2 cut(s)	13, 105
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	186
TaqI	TCGA	1 cut(s)	157
TaqII	GACCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	70, 291, 347, 352
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	2 cut(s)	231, 302
Tru1I	TTAA	3 cut(s)	320, 350, 355
Tru9I	TTAA	3 cut(s)	320, 350, 355
TscAI	CASTG	2 cut(s)	50, 241
TspRI	CASTG	2 cut(s)	50, 241
Tth111I	GACNNNGTC	1 cut(s)	29
Vha464I	CTTAAG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	18
XceI	RCATGY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.