Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Forward (+)

26465041 .. 26467242

Gene Structure 2202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0253000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGGAGGTGAGAAAAGGTTCATGGACCAAAGAGGAAGATCAACTTCTCAGGAACTACATTGAGAAACATGGAGAAGGAAGATGGCACAAGGTTCCTTTCCAAGCAGGCTTAAACCGATGCAGAAAGAGTTGTAGAATGAGGTGGTTGAATTATTTGAAGCCAAACATTAAGAGAGGAGACTTTTCAGAGGATGAAGTCGATTTAATGATTAGGCTTCGGAAGCTTTTGGGAAACAGGCAAGTACTGCTATCGAATTATCCTAGATATATAGAAAGCTCCATGTGGTCTTTGATTGCTGGACGACTTCCTGGAAGAACATCAAACGATGTGAAAAACTATTGGAGTGCTCGGCGAAGGAGAAACATAGATTTTAGCATCATGAAAAATAATAAGCCTCCAGAAATAACAAAGACCACAGTAATAAGACCTCGACCACGAACCTTCACCAAAAGTCTACATTATTTAAGTTCTAAAGCTACAACTTCAAAACCTATTGAATTAGGAAATAGTTCATCATCAACATCACCACCTATAGAGAATGGAAATGAGGAGTGGAAAACTCTACTGGAGGAAGAAGATGTCCTTACAAACTTTTGGGTTGAGGATATGGCCTCAATGTCAAGTATAGATGTCAATTCTACTGAACAAGGTTTTGAAATGGACCTTTGGCATTTTCTCCAAGAAGAAGCAAGGCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000373 GO:0000375 GO:0000377 GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0003964 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006278 GO:0006310 GO:0006314 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071897 GO:0090304 GO:0090615 GO:0140053 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Intron_maturas2 RVT_1

Protein Analysis

232

Amino Acids

27.33

Weight (kDa)

9.41

Isoelectric Point (pI)

69.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	5 - 52	4.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	8 - 67	3.2e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	58 - 114	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	454
AfaI	GTAC	1 cut(s)	243
AgsI	TTSAA	5 cut(s)	148, 157, 486, 497, 656
AjnI	CCWGG	1 cut(s)	307
AluBI	AGCT	3 cut(s)	223, 276, 476
AluI	AGCT	3 cut(s)	223, 276, 476
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	1 cut(s)	171
AoxI	GGCC	1 cut(s)	609
Asp700I	GAANNNNTTC	2 cut(s)	16, 508
AspS9I	GGNCC	2 cut(s)	24, 661
AsuHPI	GGTGA	3 cut(s)	19, 436, 516
AvaII	GGWCC	2 cut(s)	24, 661
Bbv12I	GWGCWC	1 cut(s)	349
BccI	CCATC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	309
BcoDI	GTCTC	1 cut(s)	171
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	531
BmcAI	AGTACT	1 cut(s)	243
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	24, 661
BmgT120I	GGNCC	2 cut(s)	24, 661
BmiI	GGNNCC	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	309
BmsI	GCATC	2 cut(s)	107, 384
BpmI	CTGGAG	2 cut(s)	381, 587
Bse1I	ACTGG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	61
BseNI	ACTGG	1 cut(s)	570
BseRI	GAGGAG	2 cut(s)	189, 563
BshFI	GGCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	171
BsnI	GGCC	1 cut(s)	611
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	611
BspCNI	CTCAG	1 cut(s)	60
BspHI	TCATGA	1 cut(s)	378
BspLI	GGNNCC	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	570
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	418
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	40
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	220, 244
BstNI	CCWGG	1 cut(s)	309
BstSCI	CCNGG	1 cut(s)	307
BstSFI	CTRYAG	1 cut(s)	531
BsuRI	GGCC	1 cut(s)	611
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	106
CciI	TCATGA	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	24, 661
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	4 cut(s)	21, 68, 280, 379
CviJI	RGCY	8 cut(s)	108, 160, 214, 223, 276, 394, 476, 611
CviKI_1	RGCY	8 cut(s)	108, 160, 214, 223, 276, 394, 476, 611
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco47I	GGWCC	2 cut(s)	24, 661
EcoRII	CCWGG	1 cut(s)	307
FaeI	CATG	4 cut(s)	24, 71, 283, 382
FalI	AAGNNNNNCTT	4 cut(s)	27, 59, 567, 599
FatI	CATG	4 cut(s)	20, 67, 279, 378
FblI	GTMKAC	1 cut(s)	454
FokI	GGATG	1 cut(s)	203
FspBI	CTAG	1 cut(s)	261
GsuI	CTGGAG	2 cut(s)	381, 587
HaeIII	GGCC	1 cut(s)	611
Hin1II	CATG	4 cut(s)	24, 71, 283, 382
HindIII	AAGCTT	1 cut(s)	221
HphI	GGTGA	3 cut(s)	19, 436, 516
Hpy166II	GTNNAC	1 cut(s)	455
Hpy188I	TCNGA	2 cut(s)	187, 219
Hpy188III	TCNNGA	3 cut(s)	49, 379, 398
Hpy8I	GTNNAC	1 cut(s)	455
HpyAV	CCTTC	3 cut(s)	68, 348, 451
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	2 cut(s)	220, 244
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	4 cut(s)	24, 71, 283, 382
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	8 cut(s)	34, 90, 220, 282, 294, 321, 411, 551
LweI	GCATC	2 cut(s)	107, 384
MaeI	CTAG	1 cut(s)	261
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	6 cut(s)	47, 90, 324, 584, 587, 695
MhlI	GDGCHC	1 cut(s)	349
MluCI	AATT	4 cut(s)	148, 253, 497, 634
MroXI	GAANNNNTTC	2 cut(s)	16, 508
MseI	TTAA	4 cut(s)	110, 168, 203, 464
MspR9I	CCNGG	1 cut(s)	309
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	2 cut(s)	220, 244
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	4 cut(s)	24, 71, 283, 382
NlaIV	GGNNCC	1 cut(s)	93
NmeAIII	GCCGAG	1 cut(s)	328
PagI	TCATGA	1 cut(s)	378
PdmI	GAANNNNTTC	2 cut(s)	16, 508
PfoI	TCCNGGA	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	93
PspPI	GGNCC	2 cut(s)	24, 661
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	4 cut(s)	110, 168, 203, 464
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	2 cut(s)	24, 661
ScaI	AGTACT	1 cut(s)	243
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	349
SfaNI	GCATC	2 cut(s)	107, 384
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	24, 661
Sse9I	AATT	4 cut(s)	148, 253, 497, 634
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	1 cut(s)	418
TaqI	TCGA	3 cut(s)	198, 251, 430
TasI	AATT	4 cut(s)	148, 253, 497, 634
TatI	WGTACW	1 cut(s)	241
Tru1I	TTAA	4 cut(s)	110, 168, 203, 464
Tru9I	TTAA	4 cut(s)	110, 168, 203, 464
TspDTI	ATGAA	4 cut(s)	9, 207, 395, 501
VpaK11BI	GGWCC	2 cut(s)	24, 661
XmiI	GTMKAC	1 cut(s)	454
XmnI	GAANNNNTTC	2 cut(s)	16, 508
XspI	CTAG	1 cut(s)	261
ZrmI	AGTACT	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.