Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 205 |
| AccII | CGCG | 1 cut(s) | 118 |
| AciI | CCGC | 9 cut(s) | 34, 116, 118, 205, 375, 500, 530, 605, 611 |
| AclWI | GGATC | 2 cut(s) | 46, 377 |
| AcoI | YGGCCR | 2 cut(s) | 381, 612 |
| AcsI | RAATTY | 1 cut(s) | 472 |
| AcvI | CACGTG | 1 cut(s) | 130 |
| AfaI | GTAC | 1 cut(s) | 194 |
| AflIII | ACRYGT | 2 cut(s) | 129, 357 |
| AgsI | TTSAA | 4 cut(s) | 328, 469, 478, 597 |
| AjnI | CCWGG | 2 cut(s) | 365, 525 |
| AluBI | AGCT | 5 cut(s) | 444, 451, 481, 555, 682 |
| AluI | AGCT | 5 cut(s) | 444, 451, 481, 555, 682 |
| Alw21I | GWGCWC | 1 cut(s) | 557 |
| AlwI | GGATC | 2 cut(s) | 46, 377 |
| Ama87I | CYCGRG | 1 cut(s) | 401 |
| AoxI | GGCC | 2 cut(s) | 381, 612 |
| ApeKI | GCWGC | 2 cut(s) | 121, 124 |
| ApoI | RAATTY | 1 cut(s) | 472 |
| AspA2I | CCTAGG | 1 cut(s) | 254 |
| AspLEI | GCGC | 3 cut(s) | 313, 628, 720 |
| AsuHPI | GGTGA | 3 cut(s) | 424, 544, 571 |
| AvaI | CYCGRG | 1 cut(s) | 401 |
| AvrII | CCTAGG | 1 cut(s) | 254 |
| AxyI | CCTNAGG | 1 cut(s) | 630 |
| BaeGI | GKGCMC | 1 cut(s) | 254 |
| BanII | GRGCYC | 1 cut(s) | 557 |
| BbrPI | CACGTG | 1 cut(s) | 130 |
| Bbv12I | GWGCWC | 1 cut(s) | 557 |
| BbvI | GCAGC | 2 cut(s) | 108, 136 |
| BccI | CCATC | 1 cut(s) | 418 |
| BceAI | ACGGC | 2 cut(s) | 21, 169 |
| BciT130I | CCWGG | 2 cut(s) | 367, 527 |
| BciVI | GTATCC | 1 cut(s) | 372 |
| BclI | TGATCA | 1 cut(s) | 264 |
| BfaI | CTAG | 2 cut(s) | 255, 503 |
| BfmI | CTRYAG | 2 cut(s) | 122, 143 |
| BfoI | RGCGCY | 1 cut(s) | 721 |
| BfuI | GTATCC | 1 cut(s) | 372 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 380 |
| BisI | GCNGC | 6 cut(s) | 119, 122, 125, 375, 605, 612 |
| BlnI | CCTAGG | 1 cut(s) | 254 |
| BlpI | GCTNAGC | 1 cut(s) | 576 |
| BlsI | GCNGC | 6 cut(s) | 120, 123, 126, 376, 606, 613 |
| Bme1390I | CCNGG | 2 cut(s) | 367, 527 |
| BmeT110I | CYCGRG | 1 cut(s) | 401 |
| BmiI | GGNNCC | 2 cut(s) | 114, 275 |
| BmrFI | CCNGG | 2 cut(s) | 367, 527 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 679, 711 |
| Bpu10I | CCTNAGC | 1 cut(s) | 675 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 576 |
| BpuEI | CTTGAG | 3 cut(s) | 401, 704, 722 |
| BsaAI | YACGTR | 2 cut(s) | 130, 358 |
| BsaBI | GATNNNNATC | 2 cut(s) | 56, 263 |
| BsaJI | CCNNGG | 5 cut(s) | 116, 254, 365, 378, 395 |
| Bse118I | RCCGGY | 1 cut(s) | 383 |
| Bse21I | CCTNAGG | 1 cut(s) | 630 |
| Bse8I | GATNNNNATC | 2 cut(s) | 56, 263 |
| BseBI | CCWGG | 2 cut(s) | 367, 527 |
| BseDI | CCNNGG | 5 cut(s) | 116, 254, 365, 378, 395 |
| BseGI | GGATG | 2 cut(s) | 429, 640 |
| BseJI | GATNNNNATC | 2 cut(s) | 56, 263 |
| BseMII | CTCAG | 2 cut(s) | 590, 621 |
| BseRI | GAGGAG | 3 cut(s) | 232, 419, 601 |
| BseSI | GKGCMC | 1 cut(s) | 254 |
| BseXI | GCAGC | 2 cut(s) | 108, 136 |
| BseYI | CCCAGC | 1 cut(s) | 345 |
| BsgI | GTGCAG | 1 cut(s) | 232 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| BshFI | GGCC | 2 cut(s) | 383, 614 |
| BsiHKAI | GWGCWC | 1 cut(s) | 557 |
| BsiHKCI | CYCGRG | 1 cut(s) | 401 |
| BsiSI | CCGG | 1 cut(s) | 384 |
| BsmI | GAATGC | 1 cut(s) | 577 |
| BsnI | GGCC | 2 cut(s) | 383, 614 |
| BsoBI | CYCGRG | 1 cut(s) | 401 |
| Bsp1286I | GDGCHC | 2 cut(s) | 254, 557 |
| Bsp143I | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 576 |
| Bsp19I | CCATGG | 1 cut(s) | 378 |
| BspACI | CCGC | 9 cut(s) | 34, 116, 118, 205, 375, 500, 530, 605, 611 |
| BspANI | GGCC | 2 cut(s) | 383, 614 |
| BspCNI | CTCAG | 2 cut(s) | 589, 622 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspHI | TCATGA | 1 cut(s) | 708 |
| BspLI | GGNNCC | 2 cut(s) | 114, 275 |
| BspMAI | CTGCAG | 2 cut(s) | 126, 147 |
| BspPI | GGATC | 2 cut(s) | 46, 377 |
| BsrBI | CCGCTC | 1 cut(s) | 205 |
| BsrFI | RCCGGY | 1 cut(s) | 383 |
| BssAI | RCCGGY | 1 cut(s) | 383 |
| BssECI | CCNNGG | 5 cut(s) | 116, 254, 365, 378, 395 |
| BssMI | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| BssT1I | CCWWGG | 3 cut(s) | 254, 378, 395 |
| Bst2UI | CCWGG | 2 cut(s) | 367, 527 |
| Bst6I | CTCTTC | 2 cut(s) | 578, 702 |
| BstBAI | YACGTR | 2 cut(s) | 130, 358 |
| BstC8I | GCNNGC | 1 cut(s) | 609 |
| BstDEI | CTNAG | 3 cut(s) | 576, 630, 675 |
| BstDSI | CCRYGG | 2 cut(s) | 116, 378 |
| BstF5I | GGATG | 2 cut(s) | 429, 640 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstH2I | RGCGCY | 1 cut(s) | 721 |
| BstHHI | GCGC | 3 cut(s) | 313, 628, 720 |
| BstKTI | GATC | 7 cut(s) | 54, 171, 201, 267, 372, 411, 708 |
| BstMBI | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 124, 351, 380, 572 |
| BstNI | CCWGG | 2 cut(s) | 367, 527 |
| BstSCI | CCNGG | 2 cut(s) | 365, 525 |
| BstSFI | CTRYAG | 2 cut(s) | 122, 143 |
| BstSLI | GKGCMC | 1 cut(s) | 254 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BstV1I | GCAGC | 2 cut(s) | 108, 136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 630 |
| BsuI | GTATCC | 1 cut(s) | 372 |
| BsuRI | GGCC | 2 cut(s) | 383, 614 |
| BtgI | CCRYGG | 2 cut(s) | 116, 378 |
| BtsCI | GGATG | 2 cut(s) | 429, 640 |
| BtsIMutI | CAGTG | 1 cut(s) | 5 |
| Cac8I | GCNNGC | 1 cut(s) | 609 |
| CciI | TCATGA | 1 cut(s) | 708 |
| CfoI | GCGC | 3 cut(s) | 313, 628, 720 |
| Cfr10I | RCCGGY | 1 cut(s) | 383 |
| Cfr42I | CCGCGG | 1 cut(s) | 119 |
| Csp6I | GTAC | 1 cut(s) | 193 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 604, 639 |
| CviAII | CATG | 2 cut(s) | 379, 709 |
| CviQI | GTAC | 1 cut(s) | 193 |
| DdeI | CTNAG | 3 cut(s) | 576, 630, 675 |
| DpnI | GATC | 7 cut(s) | 53, 170, 200, 266, 371, 410, 707 |
| DpnII | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| EaeI | YGGCCR | 2 cut(s) | 381, 612 |
| Eam1104I | CTCTTC | 2 cut(s) | 578, 702 |
| EarI | CTCTTC | 2 cut(s) | 578, 702 |
| EciI | GGCGGA | 1 cut(s) | 23 |
| Ecl136II | GAGCTC | 1 cut(s) | 555 |
| Eco130I | CCWWGG | 3 cut(s) | 254, 378, 395 |
| Eco24I | GRGCYC | 1 cut(s) | 557 |
| Eco53kI | GAGCTC | 1 cut(s) | 555 |
| Eco72I | CACGTG | 1 cut(s) | 130 |
| Eco81I | CCTNAGG | 1 cut(s) | 630 |
| Eco88I | CYCGRG | 1 cut(s) | 401 |
| EcoICRI | GAGCTC | 1 cut(s) | 555 |
| EcoRII | CCWGG | 2 cut(s) | 365, 525 |
| EcoT14I | CCWWGG | 3 cut(s) | 254, 378, 395 |
| EcoT38I | GRGCYC | 1 cut(s) | 557 |
| ErhI | CCWWGG | 3 cut(s) | 254, 378, 395 |
| FaeI | CATG | 2 cut(s) | 382, 712 |
| FaiI | YATR | 4 cut(s) | 380, 494, 663, 710 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 299, 331 |
| FatI | CATG | 2 cut(s) | 378, 708 |
| FbaI | TGATCA | 1 cut(s) | 264 |
| Fnu4HI | GCNGC | 6 cut(s) | 119, 122, 125, 375, 605, 612 |
| FokI | GGATG | 2 cut(s) | 436, 647 |
| FriOI | GRGCYC | 1 cut(s) | 557 |
| Fsp4HI | GCNGC | 6 cut(s) | 119, 122, 125, 375, 605, 612 |
| FspBI | CTAG | 2 cut(s) | 255, 503 |
| GlaI | GCGC | 3 cut(s) | 312, 627, 719 |
| GluI | GCNGC | 6 cut(s) | 119, 122, 125, 375, 605, 612 |
| GsaI | CCCAGC | 1 cut(s) | 349 |
| HaeII | RGCGCY | 1 cut(s) | 721 |
| HaeIII | GGCC | 2 cut(s) | 383, 614 |
| HapII | CCGG | 1 cut(s) | 384 |
| HhaI | GCGC | 3 cut(s) | 313, 628, 720 |
| Hin1II | CATG | 2 cut(s) | 382, 712 |
| Hin6I | GCGC | 3 cut(s) | 311, 626, 718 |
| HinP1I | GCGC | 3 cut(s) | 311, 626, 718 |
| HincII | GTYRAC | 1 cut(s) | 322 |
| HindII | GTYRAC | 1 cut(s) | 322 |
| HinfI | GANTC | 4 cut(s) | 77, 90, 288, 593 |
| HpaII | CCGG | 1 cut(s) | 384 |
| HphI | GGTGA | 3 cut(s) | 424, 544, 571 |
| Hpy166II | GTNNAC | 1 cut(s) | 322 |
| Hpy188I | TCNGA | 4 cut(s) | 68, 151, 162, 340 |
| Hpy188III | TCNNGA | 5 cut(s) | 232, 418, 469, 701, 709 |
| Hpy8I | GTNNAC | 1 cut(s) | 322 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 440 |
| HpyAV | CCTTC | 2 cut(s) | 301, 556 |
| HpyCH4IV | ACGT | 4 cut(s) | 129, 282, 357, 536 |
| HpyCH4V | TGCA | 5 cut(s) | 101, 124, 145, 183, 213 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 124, 351, 380, 572 |
| HpyF3I | CTNAG | 3 cut(s) | 576, 630, 675 |
| HpySE526I | ACGT | 4 cut(s) | 129, 282, 357, 536 |
| Hsp92II | CATG | 2 cut(s) | 382, 712 |
| HspAI | GCGC | 3 cut(s) | 311, 626, 718 |
| Ksp22I | TGATCA | 1 cut(s) | 264 |
| KspI | CCGCGG | 1 cut(s) | 119 |
| Kzo9I | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| LmnI | GCTCC | 4 cut(s) | 448, 486, 552, 679 |
| Lsp1109I | GCAGC | 2 cut(s) | 108, 136 |
| MaeI | CTAG | 2 cut(s) | 255, 503 |
| MaeII | ACGT | 4 cut(s) | 129, 282, 357, 536 |
| MaeIII | GTNAC | 2 cut(s) | 430, 532 |
| MalI | GATC | 7 cut(s) | 53, 170, 200, 266, 371, 410, 707 |
| MbiI | CCGCTC | 1 cut(s) | 205 |
| MboI | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| MboII | GAAGA | 2 cut(s) | 595, 689 |
| MfeI | CAATTG | 2 cut(s) | 597, 668 |
| MhlI | GDGCHC | 2 cut(s) | 254, 557 |
| MluCI | AATT | 4 cut(s) | 472, 597, 668, 727 |
| MlyI | GAGTC | 1 cut(s) | 84 |
| MmeI | TCCRAC | 2 cut(s) | 129, 318 |
| MspA1I | CMGCKG | 1 cut(s) | 118 |
| MspI | CCGG | 1 cut(s) | 384 |
| MspR9I | CCNGG | 2 cut(s) | 367, 527 |
| MunI | CAATTG | 2 cut(s) | 597, 668 |
| Mva1269I | GAATGC | 1 cut(s) | 577 |
| MvaI | CCWGG | 2 cut(s) | 367, 527 |
| MvnI | CGCG | 1 cut(s) | 118 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 124, 351, 380, 572 |
| NcoI | CCATGG | 1 cut(s) | 378 |
| NdeII | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| NlaIII | CATG | 2 cut(s) | 382, 712 |
| NlaIV | GGNNCC | 2 cut(s) | 114, 275 |
| NmuCI | GTSAC | 2 cut(s) | 430, 532 |
| PaeR7I | CTCGAG | 1 cut(s) | 401 |
| PagI | TCATGA | 1 cut(s) | 708 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 435 |
| PctI | GAATGC | 1 cut(s) | 577 |
| PfeI | GAWTC | 3 cut(s) | 77, 288, 593 |
| PkrI | GCNGC | 6 cut(s) | 120, 123, 126, 376, 606, 613 |
| PleI | GAGTC | 1 cut(s) | 84 |
| PmaCI | CACGTG | 1 cut(s) | 130 |
| PmlI | CACGTG | 1 cut(s) | 130 |
| PpsI | GAGTC | 1 cut(s) | 84 |
| Ppu21I | YACGTR | 2 cut(s) | 130, 358 |
| Psp124BI | GAGCTC | 1 cut(s) | 557 |
| Psp6I | CCWGG | 2 cut(s) | 365, 525 |
| PspCI | CACGTG | 1 cut(s) | 130 |
| PspFI | CCCAGC | 1 cut(s) | 345 |
| PspGI | CCWGG | 2 cut(s) | 365, 525 |
| PspN4I | GGNNCC | 2 cut(s) | 114, 275 |
| PspXI | VCTCGAGB | 1 cut(s) | 401 |
| PstI | CTGCAG | 2 cut(s) | 126, 147 |
| RsaI | GTAC | 1 cut(s) | 194 |
| RsaNI | GTAC | 1 cut(s) | 193 |
| SacI | GAGCTC | 1 cut(s) | 557 |
| SacII | CCGCGG | 1 cut(s) | 119 |
| SatI | GCNGC | 6 cut(s) | 119, 122, 125, 375, 605, 612 |
| Sau3AI | GATC | 7 cut(s) | 51, 168, 198, 264, 369, 408, 705 |
| SchI | GAGTC | 1 cut(s) | 84 |
| ScrFI | CCNGG | 2 cut(s) | 367, 527 |
| SduI | GDGCHC | 2 cut(s) | 254, 557 |
| SfcI | CTRYAG | 2 cut(s) | 122, 143 |
| Sfr274I | CTCGAG | 1 cut(s) | 401 |
| Sfr303I | CCGCGG | 1 cut(s) | 119 |
| SgrBI | CCGCGG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 401 |
| SmlI | CTYRAG | 5 cut(s) | 401, 416, 683, 701, 721 |
| SmoI | CTYRAG | 5 cut(s) | 401, 416, 683, 701, 721 |
| Sse9I | AATT | 4 cut(s) | 472, 597, 668, 727 |
| SsiI | CCGC | 9 cut(s) | 34, 116, 118, 205, 375, 500, 530, 605, 611 |
| SspMI | CTAG | 2 cut(s) | 255, 503 |
| SstI | GAGCTC | 1 cut(s) | 557 |
| StyD4I | CCNGG | 2 cut(s) | 365, 525 |
| StyI | CCWWGG | 3 cut(s) | 254, 378, 395 |
| TaiI | ACGT | 4 cut(s) | 132, 285, 360, 539 |
| TaqI | TCGA | 4 cut(s) | 50, 167, 201, 402 |
| TasI | AATT | 4 cut(s) | 472, 597, 668, 727 |
| TauI | GCSGC | 4 cut(s) | 121, 377, 607, 614 |
| TfiI | GAWTC | 3 cut(s) | 77, 288, 593 |
| TscAI | CASTG | 1 cut(s) | 12 |
| TseFI | GTSAC | 2 cut(s) | 430, 532 |
| TseI | GCWGC | 2 cut(s) | 121, 124 |
| Tsp45I | GTSAC | 2 cut(s) | 430, 532 |
| TspDTI | ATGAA | 2 cut(s) | 280, 498 |
| TspGWI | ACGGA | 1 cut(s) | 125 |
| TspRI | CASTG | 1 cut(s) | 12 |
| XapI | RAATTY | 1 cut(s) | 472 |
| XhoI | CTCGAG | 1 cut(s) | 401 |
| XmaJI | CCTAGG | 1 cut(s) | 254 |
| XspI | CTAG | 2 cut(s) | 255, 503 |