Rorug06G0048200

Homeodomain

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
6353825 .. 6354669
845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0048200.1

Sequence Viewer

Length: 732 bp
ATGCCACTGACCAAAATCTCTCTGTTTGCTCTCCGCCGTTTTACCCGTTCGATCCTAATCCAAGTCAGACCCACCGAATCCCCGACCCGACTCGCCTTTGCAAAATGGACGGAACCGCGGCTGCAGCACGTGTTCTCGTTTCTGCAGTCGGACGGCAATCGGAACTCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAGGATATTCGTCGGGAACTGCTACGCTGTGTGCCCTAGGATTTTGATCAGTCGGTTCCCAGACGTTAGATTCATCACGCTCAAAGGGAAGGCGCACTTCGTTGACTTCAATCTGGTGTCGGAGGGCTGGGGTGGCTACGTGTATCCCTGGATCGCCGCCATGGCCGGTGCTTATCCTTGGCTCGAGGAGATCAGGCTCAAGAGGATGGTCGTCACCGACGAGAGCTTGGAGCTGATTGCCAAGTCTTTCAAGAATTTCAAGCTCCTTGTAAATATAACTCCGCTAGGTTCATTTCGTGTGCCGAACCAGGCGGTGACGTTTTCGCAGAGGTGGAGCTCGGTGAAGGCTGTGAATGCTCAGCCGAAGAGGAGAGATTCAATTGTGCCGCTTGCGGCCACGATTGTTGCGCCTGAGGATGTTGAGAAAGTGGAGGCAGAGGACTATGAGCAATTGGCTAAGGAGCTTGAGAGTGCTTCTCTTCTTGAGATCATGACAAGGCGCTTGAGAAATTAG

Protein Analysis

243

Amino Acids

28.1

Weight (kDa)

9.8

Isoelectric Point (pI)

59.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box_5 PF18511 41 - 73 5.2e-13 F-box
Transp_inhibit PF18791 93 - 139 2e-21 Transport inhibitor response 1 protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AccII CGCG 1 cut(s) 118
AciI CCGC 9 cut(s) 34, 116, 118, 205, 375, 500, 530, 605, 611
AclWI GGATC 2 cut(s) 46, 377
AcoI YGGCCR 2 cut(s) 381, 612
AcsI RAATTY 1 cut(s) 472
AcvI CACGTG 1 cut(s) 130
AfaI GTAC 1 cut(s) 194
AflIII ACRYGT 2 cut(s) 129, 357
AgsI TTSAA 4 cut(s) 328, 469, 478, 597
AjnI CCWGG 2 cut(s) 365, 525
AluBI AGCT 5 cut(s) 444, 451, 481, 555, 682
AluI AGCT 5 cut(s) 444, 451, 481, 555, 682
Alw21I GWGCWC 1 cut(s) 557
AlwI GGATC 2 cut(s) 46, 377
Ama87I CYCGRG 1 cut(s) 401
AoxI GGCC 2 cut(s) 381, 612
ApeKI GCWGC 2 cut(s) 121, 124
ApoI RAATTY 1 cut(s) 472
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 3 cut(s) 313, 628, 720
AsuHPI GGTGA 3 cut(s) 424, 544, 571
AvaI CYCGRG 1 cut(s) 401
AvrII CCTAGG 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 630
BaeGI GKGCMC 1 cut(s) 254
BanII GRGCYC 1 cut(s) 557
BbrPI CACGTG 1 cut(s) 130
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 2 cut(s) 108, 136
BccI CCATC 1 cut(s) 418
BceAI ACGGC 2 cut(s) 21, 169
BciT130I CCWGG 2 cut(s) 367, 527
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 1 cut(s) 264
BfaI CTAG 2 cut(s) 255, 503
BfmI CTRYAG 2 cut(s) 122, 143
BfoI RGCGCY 1 cut(s) 721
BfuI GTATCC 1 cut(s) 372
BglI GCCNNNNNGGC 1 cut(s) 380
BisI GCNGC 6 cut(s) 119, 122, 125, 375, 605, 612
BlnI CCTAGG 1 cut(s) 254
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 6 cut(s) 120, 123, 126, 376, 606, 613
Bme1390I CCNGG 2 cut(s) 367, 527
BmeT110I CYCGRG 1 cut(s) 401
BmiI GGNNCC 2 cut(s) 114, 275
BmrFI CCNGG 2 cut(s) 367, 527
BplI GAGNNNNNCTC 2 cut(s) 679, 711
Bpu10I CCTNAGC 1 cut(s) 675
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 3 cut(s) 401, 704, 722
BsaAI YACGTR 2 cut(s) 130, 358
BsaBI GATNNNNATC 2 cut(s) 56, 263
BsaJI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
Bse118I RCCGGY 1 cut(s) 383
Bse21I CCTNAGG 1 cut(s) 630
Bse8I GATNNNNATC 2 cut(s) 56, 263
BseBI CCWGG 2 cut(s) 367, 527
BseDI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
BseGI GGATG 2 cut(s) 429, 640
BseJI GATNNNNATC 2 cut(s) 56, 263
BseMII CTCAG 2 cut(s) 590, 621
BseRI GAGGAG 3 cut(s) 232, 419, 601
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 2 cut(s) 108, 136
BseYI CCCAGC 1 cut(s) 345
BsgI GTGCAG 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 383, 614
BsiHKAI GWGCWC 1 cut(s) 557
BsiHKCI CYCGRG 1 cut(s) 401
BsiSI CCGG 1 cut(s) 384
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 2 cut(s) 383, 614
BsoBI CYCGRG 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 254, 557
Bsp143I GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
Bsp1720I GCTNAGC 1 cut(s) 576
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 9 cut(s) 34, 116, 118, 205, 375, 500, 530, 605, 611
BspANI GGCC 2 cut(s) 383, 614
BspCNI CTCAG 2 cut(s) 589, 622
BspFNI CGCG 1 cut(s) 118
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 2 cut(s) 114, 275
BspMAI CTGCAG 2 cut(s) 126, 147
BspPI GGATC 2 cut(s) 46, 377
BsrBI CCGCTC 1 cut(s) 205
BsrFI RCCGGY 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 383
BssECI CCNNGG 5 cut(s) 116, 254, 365, 378, 395
BssMI GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
BssT1I CCWWGG 3 cut(s) 254, 378, 395
Bst2UI CCWGG 2 cut(s) 367, 527
Bst6I CTCTTC 2 cut(s) 578, 702
BstBAI YACGTR 2 cut(s) 130, 358
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 3 cut(s) 576, 630, 675
BstDSI CCRYGG 2 cut(s) 116, 378
BstF5I GGATG 2 cut(s) 429, 640
BstFNI CGCG 1 cut(s) 118
BstH2I RGCGCY 1 cut(s) 721
BstHHI GCGC 3 cut(s) 313, 628, 720
BstKTI GATC 7 cut(s) 54, 171, 201, 267, 372, 411, 708
BstMBI GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
BstMWI GCNNNNNNNGC 4 cut(s) 124, 351, 380, 572
BstNI CCWGG 2 cut(s) 367, 527
BstSCI CCNGG 2 cut(s) 365, 525
BstSFI CTRYAG 2 cut(s) 122, 143
BstSLI GKGCMC 1 cut(s) 254
BstUI CGCG 1 cut(s) 118
BstV1I GCAGC 2 cut(s) 108, 136
Bsu36I CCTNAGG 1 cut(s) 630
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 2 cut(s) 383, 614
BtgI CCRYGG 2 cut(s) 116, 378
BtsCI GGATG 2 cut(s) 429, 640
BtsIMutI CAGTG 1 cut(s) 5
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 1 cut(s) 708
CfoI GCGC 3 cut(s) 313, 628, 720
Cfr10I RCCGGY 1 cut(s) 383
Cfr42I CCGCGG 1 cut(s) 119
Csp6I GTAC 1 cut(s) 193
CspCI CAANNNNNGTGG 2 cut(s) 604, 639
CviAII CATG 2 cut(s) 379, 709
CviQI GTAC 1 cut(s) 193
DdeI CTNAG 3 cut(s) 576, 630, 675
DpnI GATC 7 cut(s) 53, 170, 200, 266, 371, 410, 707
DpnII GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
EaeI YGGCCR 2 cut(s) 381, 612
Eam1104I CTCTTC 2 cut(s) 578, 702
EarI CTCTTC 2 cut(s) 578, 702
EciI GGCGGA 1 cut(s) 23
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 3 cut(s) 254, 378, 395
Eco24I GRGCYC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 555
Eco72I CACGTG 1 cut(s) 130
Eco81I CCTNAGG 1 cut(s) 630
Eco88I CYCGRG 1 cut(s) 401
EcoICRI GAGCTC 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 365, 525
EcoT14I CCWWGG 3 cut(s) 254, 378, 395
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 3 cut(s) 254, 378, 395
FaeI CATG 2 cut(s) 382, 712
FaiI YATR 4 cut(s) 380, 494, 663, 710
FalI AAGNNNNNCTT 2 cut(s) 299, 331
FatI CATG 2 cut(s) 378, 708
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 6 cut(s) 119, 122, 125, 375, 605, 612
FokI GGATG 2 cut(s) 436, 647
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 6 cut(s) 119, 122, 125, 375, 605, 612
FspBI CTAG 2 cut(s) 255, 503
GlaI GCGC 3 cut(s) 312, 627, 719
GluI GCNGC 6 cut(s) 119, 122, 125, 375, 605, 612
GsaI CCCAGC 1 cut(s) 349
HaeII RGCGCY 1 cut(s) 721
HaeIII GGCC 2 cut(s) 383, 614
HapII CCGG 1 cut(s) 384
HhaI GCGC 3 cut(s) 313, 628, 720
Hin1II CATG 2 cut(s) 382, 712
Hin6I GCGC 3 cut(s) 311, 626, 718
HinP1I GCGC 3 cut(s) 311, 626, 718
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 4 cut(s) 77, 90, 288, 593
HpaII CCGG 1 cut(s) 384
HphI GGTGA 3 cut(s) 424, 544, 571
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 4 cut(s) 68, 151, 162, 340
Hpy188III TCNNGA 5 cut(s) 232, 418, 469, 701, 709
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 2 cut(s) 233, 440
HpyAV CCTTC 2 cut(s) 301, 556
HpyCH4IV ACGT 4 cut(s) 129, 282, 357, 536
HpyCH4V TGCA 5 cut(s) 101, 124, 145, 183, 213
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 351, 380, 572
HpyF3I CTNAG 3 cut(s) 576, 630, 675
HpySE526I ACGT 4 cut(s) 129, 282, 357, 536
Hsp92II CATG 2 cut(s) 382, 712
HspAI GCGC 3 cut(s) 311, 626, 718
Ksp22I TGATCA 1 cut(s) 264
KspI CCGCGG 1 cut(s) 119
Kzo9I GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
LmnI GCTCC 4 cut(s) 448, 486, 552, 679
Lsp1109I GCAGC 2 cut(s) 108, 136
MaeI CTAG 2 cut(s) 255, 503
MaeII ACGT 4 cut(s) 129, 282, 357, 536
MaeIII GTNAC 2 cut(s) 430, 532
MalI GATC 7 cut(s) 53, 170, 200, 266, 371, 410, 707
MbiI CCGCTC 1 cut(s) 205
MboI GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
MboII GAAGA 2 cut(s) 595, 689
MfeI CAATTG 2 cut(s) 597, 668
MhlI GDGCHC 2 cut(s) 254, 557
MluCI AATT 4 cut(s) 472, 597, 668, 727
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 2 cut(s) 129, 318
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 384
MspR9I CCNGG 2 cut(s) 367, 527
MunI CAATTG 2 cut(s) 597, 668
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 2 cut(s) 367, 527
MvnI CGCG 1 cut(s) 118
MwoI GCNNNNNNNGC 4 cut(s) 124, 351, 380, 572
NcoI CCATGG 1 cut(s) 378
NdeII GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
NlaIII CATG 2 cut(s) 382, 712
NlaIV GGNNCC 2 cut(s) 114, 275
NmuCI GTSAC 2 cut(s) 430, 532
PaeR7I CTCGAG 1 cut(s) 401
PagI TCATGA 1 cut(s) 708
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 3 cut(s) 77, 288, 593
PkrI GCNGC 6 cut(s) 120, 123, 126, 376, 606, 613
PleI GAGTC 1 cut(s) 84
PmaCI CACGTG 1 cut(s) 130
PmlI CACGTG 1 cut(s) 130
PpsI GAGTC 1 cut(s) 84
Ppu21I YACGTR 2 cut(s) 130, 358
Psp124BI GAGCTC 1 cut(s) 557
Psp6I CCWGG 2 cut(s) 365, 525
PspCI CACGTG 1 cut(s) 130
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 2 cut(s) 365, 525
PspN4I GGNNCC 2 cut(s) 114, 275
PspXI VCTCGAGB 1 cut(s) 401
PstI CTGCAG 2 cut(s) 126, 147
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
SacI GAGCTC 1 cut(s) 557
SacII CCGCGG 1 cut(s) 119
SatI GCNGC 6 cut(s) 119, 122, 125, 375, 605, 612
Sau3AI GATC 7 cut(s) 51, 168, 198, 264, 369, 408, 705
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 2 cut(s) 367, 527
SduI GDGCHC 2 cut(s) 254, 557
SfcI CTRYAG 2 cut(s) 122, 143
Sfr274I CTCGAG 1 cut(s) 401
Sfr303I CCGCGG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 119
SlaI CTCGAG 1 cut(s) 401
SmlI CTYRAG 5 cut(s) 401, 416, 683, 701, 721
SmoI CTYRAG 5 cut(s) 401, 416, 683, 701, 721
Sse9I AATT 4 cut(s) 472, 597, 668, 727
SsiI CCGC 9 cut(s) 34, 116, 118, 205, 375, 500, 530, 605, 611
SspMI CTAG 2 cut(s) 255, 503
SstI GAGCTC 1 cut(s) 557
StyD4I CCNGG 2 cut(s) 365, 525
StyI CCWWGG 3 cut(s) 254, 378, 395
TaiI ACGT 4 cut(s) 132, 285, 360, 539
TaqI TCGA 4 cut(s) 50, 167, 201, 402
TasI AATT 4 cut(s) 472, 597, 668, 727
TauI GCSGC 4 cut(s) 121, 377, 607, 614
TfiI GAWTC 3 cut(s) 77, 288, 593
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 2 cut(s) 430, 532
TseI GCWGC 2 cut(s) 121, 124
Tsp45I GTSAC 2 cut(s) 430, 532
TspDTI ATGAA 2 cut(s) 280, 498
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 1 cut(s) 12
XapI RAATTY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 401
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 2 cut(s) 255, 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.