Homeodomain
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 14 |
| AccI | GTMKAC | 1 cut(s) | 57 |
| AclWI | GGATC | 2 cut(s) | 29, 171 |
| AcuI | CTGAAG | 2 cut(s) | 276, 331 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 14 |
| AgsI | TTSAA | 2 cut(s) | 113, 377 |
| AleI | CACNNNNGTG | 1 cut(s) | 69 |
| Alw26I | GTCTC | 1 cut(s) | 45 |
| AlwI | GGATC | 2 cut(s) | 29, 171 |
| AoxI | GGCC | 1 cut(s) | 31 |
| AspS9I | GGNCC | 2 cut(s) | 31, 282 |
| AsuHPI | GGTGA | 1 cut(s) | 291 |
| AvaII | GGWCC | 1 cut(s) | 282 |
| BanII | GRGCYC | 1 cut(s) | 8 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 44, 76 |
| BbsI | GAAGAC | 2 cut(s) | 337, 384 |
| BccI | CCATC | 1 cut(s) | 185 |
| BceAI | ACGGC | 2 cut(s) | 54, 304 |
| BcoDI | GTCTC | 1 cut(s) | 45 |
| BmcAI | AGTACT | 1 cut(s) | 137 |
| Bme18I | GGWCC | 1 cut(s) | 282 |
| BmgT120I | GGNCC | 2 cut(s) | 31, 282 |
| BpiI | GAAGAC | 2 cut(s) | 337, 384 |
| BpuEI | CTTGAG | 1 cut(s) | 124 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 14 |
| Bse3DI | GCAATG | 1 cut(s) | 381 |
| BseGI | GGATG | 1 cut(s) | 196 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BseMI | GCAATG | 1 cut(s) | 381 |
| BseMII | CTCAG | 2 cut(s) | 294, 321 |
| BshFI | GGCC | 1 cut(s) | 33 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 14 |
| BsmAI | GTCTC | 1 cut(s) | 45 |
| BsnI | GGCC | 1 cut(s) | 33 |
| Bsp1286I | GDGCHC | 1 cut(s) | 8 |
| Bsp143I | GATC | 2 cut(s) | 21, 163 |
| BspANI | GGCC | 1 cut(s) | 33 |
| BspCNI | CTCAG | 2 cut(s) | 295, 322 |
| BspPI | GGATC | 2 cut(s) | 29, 171 |
| BsrDI | GCAATG | 1 cut(s) | 381 |
| BssMI | GATC | 2 cut(s) | 21, 163 |
| BssNAI | GTATAC | 1 cut(s) | 58 |
| Bst1107I | GTATAC | 1 cut(s) | 58 |
| BstC8I | GCNNGC | 1 cut(s) | 313 |
| BstDEI | CTNAG | 3 cut(s) | 207, 303, 330 |
| BstF5I | GGATG | 1 cut(s) | 196 |
| BstKTI | GATC | 2 cut(s) | 24, 166 |
| BstMAI | GTCTC | 1 cut(s) | 45 |
| BstMBI | GATC | 2 cut(s) | 21, 163 |
| BstV2I | GAAGAC | 2 cut(s) | 337, 384 |
| BstX2I | RGATCY | 1 cut(s) | 163 |
| BstYI | RGATCY | 1 cut(s) | 163 |
| BstZ17I | GTATAC | 1 cut(s) | 58 |
| BsuRI | GGCC | 1 cut(s) | 33 |
| BtsCI | GGATG | 1 cut(s) | 196 |
| BtsI | GCAGTG | 1 cut(s) | 64 |
| BtsIMutI | CAGTG | 1 cut(s) | 64 |
| Cac8I | GCNNGC | 1 cut(s) | 313 |
| Cfr13I | GGNCC | 2 cut(s) | 31, 282 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviJI | RGCY | 3 cut(s) | 6, 33, 291 |
| CviKI_1 | RGCY | 3 cut(s) | 6, 33, 291 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 3 cut(s) | 207, 303, 330 |
| DpnI | GATC | 2 cut(s) | 23, 165 |
| DpnII | GATC | 2 cut(s) | 21, 163 |
| Eco24I | GRGCYC | 1 cut(s) | 8 |
| Eco47I | GGWCC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 2 cut(s) | 276, 331 |
| EcoT38I | GRGCYC | 1 cut(s) | 8 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 105, 137 |
| FblI | GTMKAC | 1 cut(s) | 57 |
| FokI | GGATG | 1 cut(s) | 203 |
| FriOI | GRGCYC | 1 cut(s) | 8 |
| HaeIII | GGCC | 1 cut(s) | 33 |
| HphI | GGTGA | 1 cut(s) | 291 |
| Hpy166II | GTNNAC | 1 cut(s) | 58 |
| Hpy188I | TCNGA | 4 cut(s) | 26, 45, 331, 340 |
| Hpy188III | TCNNGA | 2 cut(s) | 141, 280 |
| Hpy8I | GTNNAC | 1 cut(s) | 58 |
| HpyAV | CCTTC | 1 cut(s) | 95 |
| HpyCH4V | TGCA | 2 cut(s) | 311, 386 |
| HpyF3I | CTNAG | 3 cut(s) | 207, 303, 330 |
| Kzo9I | GATC | 2 cut(s) | 21, 163 |
| LpnPI | CCDG | 4 cut(s) | 50, 145, 265, 315 |
| MalI | GATC | 2 cut(s) | 23, 165 |
| MboI | GATC | 2 cut(s) | 21, 163 |
| MboII | GAAGA | 3 cut(s) | 91, 337, 389 |
| MflI | RGATCY | 1 cut(s) | 163 |
| MhlI | GDGCHC | 1 cut(s) | 8 |
| MluCI | AATT | 3 cut(s) | 47, 82, 93 |
| MmeI | TCCRAC | 1 cut(s) | 348 |
| MseI | TTAA | 1 cut(s) | 146 |
| MslI | CAYNNNNRTG | 1 cut(s) | 69 |
| NdeII | GATC | 2 cut(s) | 21, 163 |
| OliI | CACNNNNGTG | 1 cut(s) | 69 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 14 |
| PspPI | GGNCC | 2 cut(s) | 31, 282 |
| PsuI | RGATCY | 1 cut(s) | 163 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 1 cut(s) | 69 |
| SaqAI | TTAA | 1 cut(s) | 146 |
| Sau3AI | GATC | 2 cut(s) | 21, 163 |
| Sau96I | GGNCC | 2 cut(s) | 31, 282 |
| ScaI | AGTACT | 1 cut(s) | 137 |
| SduI | GDGCHC | 1 cut(s) | 8 |
| SetI | ASST | 5 cut(s) | 39, 106, 276, 287, 304 |
| SinI | GGWCC | 1 cut(s) | 282 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 69 |
| SmlI | CTYRAG | 1 cut(s) | 139 |
| SmoI | CTYRAG | 1 cut(s) | 139 |
| Sse9I | AATT | 3 cut(s) | 47, 82, 93 |
| SspI | AATATT | 1 cut(s) | 181 |
| TasI | AATT | 3 cut(s) | 47, 82, 93 |
| TatI | WGTACW | 1 cut(s) | 135 |
| Tru1I | TTAA | 1 cut(s) | 146 |
| Tru9I | TTAA | 1 cut(s) | 146 |
| TscAI | CASTG | 1 cut(s) | 71 |
| TspDTI | ATGAA | 1 cut(s) | 215 |
| TspGWI | ACGGA | 1 cut(s) | 34 |
| TspRI | CASTG | 1 cut(s) | 71 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 1 cut(s) | 282 |
| XmiI | GTMKAC | 1 cut(s) | 57 |
| ZrmI | AGTACT | 1 cut(s) | 137 |