Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

71565979 .. 71570501

Gene Structure 4523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0526800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1947 bp

ATGACCCAGGTCTGTTCGCCGGAGCCGAACCGCGCCGTGCTGCCGGAATTTCGTTCCTGCCCGTCCTCTCCGCCATTGCCGGCGACCAGTCCCGATCCGTCGGCAATTGGGCGGGAGTCTTGGGCCGGAGCCGAGCGGGCCACCCGGGATATACTGTCCAAGATTCAGCCCACGGCGGCGACTCACCGGAGAAGGAAGGATATCATTCTATATGTGCAGAGCCTCATCACTTGTAACGTGGGCTGTCAGGTTTTTCCTTATGGGTCAGTTCCATTAAAGACATATCTTCCCGATGGAGATATAGACTTGACGGTTTTCACTGGCAGTGCGCATCTTGAGGATGTCCTTGTAACTCATGTTCATGCTGTTCTGAAGGGGGAAGAGAATAATGAAGCTGCTCAGTATCAAGTGAAGGATGTCCATCGCATTGATGCTGAGGTTAAACTTGTAAAATGCATTGTTCAAAATATGATTGTAGATATATCCTTCAATCAGTTAGGAGGACTTTCTACACTACGCTTTCTTGAACAGGTTGATCACTATATTGGCAAAGATCATATTTTCAAACGCAGCATTATTCTGATAAAAGCCTGGTGCTACTATGAGAGTCGTATTCTTGGTGCTCATCATGGTTTAATTTCAACATATGCTTTGGAAACTTTAGTCCTATATATATTCCATCTTTTTCATTCTTCTCTAGATGGCCCTTTAACGGTCCTCTACAGATTTTTGGATTACTTCAGCAAATTTGATTGGGAGAAATATTGTGTAAGTTTAAATGGACCAGTTTGCAAATCCTCCCTACCTGATATTGTGGCTGAAGTACCAGATAATGAAGGGGATGATGTACTGCTAAGTGAAGAGTTTATTAGAAACTGTGTAGACATGTTCTCTGTTCCATCAAAGGGGTGTGAGACAAACTTAAGAGTGTTTTCCTTGAAGCATCTTAATATAATCGATCCACTAAAAGAGAACAACAACCTTGGCCGTAGTGTCAATAGAGGTAGCTTCTATCGAATATGTAGTGCTTTTAAATATGGAGCTCGCAAGCTAGGCTGGATTCTCTTGTTACCAGCAGAGAGAATATCTGATGAACTTAACAAGTTTTTCGCTAACACTTTGGATAGGCATGAAAGTAAATGCCAGACTACTGTGCAAAATAATGCCTTGTTGGAGCTTGGTGAAGATTTGGACAGTCATTGTTTGAACCTGCAATATAGTCTGATTGGCCAGAGGTGTGCTACATCACCTCCTTTATTGCCCAGTCCTCCCTTGTCACCTCAACCATGGAAAGAGAATCCATGGGATGCTACCTGCGAAGCCCTACAGTCCCAGCACAATATTAATTCTCAAGCTAATGCAAATGGTATTCCTTGGGGAACACATGCGTATCACACAAATGGTGCCAGTTTTTTTGTTCCTCCATTCAGAGAAGAGAAGAACAAACCACGAGGAACAGGGACGTACATCCCCAATGCGTCTTTTCAGAATTATCGTCCCTACAAGGATAGACACTTGCCTGGAAGGGGAAGGAAAGAGGCAGCTGGAACTTATGCTCCATTTCAGAGACACACTTTCAATTATGGCTTTCCTGCAGCCTCTCAAGAGTCAATCGCACCTGGAGAATGCAACCATGAGCTCTCAGAAGCTGAGTACCCAGTTTTAAGTAATGCAAACTCTGCAACATCAGATTACCATCAACCTCAGCTTTCAATTTGGGAGCCTTTCCATGAAAATGGTTTCTCCAAATCCCCCGACAAACCTGAGTCTAGATCCTCCTCCCCTCAATCATGGGAAGAAGTACCCATGCCACAACTGGACAGTTTACGGTTATCAGGAGTCGATGAAGAGAGGATTGACGAGCAGGCATTCCATCTGAAGGATGAAGCTGATTTCCCCCCGCTCACCCCTCGACTGCCTTTGAAGGACGGAATATGCATTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

648

Amino Acids

72.86

Weight (kDa)

5.81

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	48 - 175	1.2e-07	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
PAP-OAS1	PF26180	182 - 374	2.8e-100	PAP/OAS1 substrate-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	330
Acc36I	ACCTGC	2 cut(s)	1218, 1322
AccB1I	GGYRCC	1 cut(s)	1403
AccBSI	CCGCTC	2 cut(s)	136, 1903
AccI	GTMKAC	1 cut(s)	882
AccII	CGCG	1 cut(s)	33
AciI	CCGC	6 cut(s)	31, 71, 112, 136, 176, 1901
AclWI	GGATC	3 cut(s)	89, 953, 1767
AcoI	YGGCCR	2 cut(s)	985, 1228
AcsI	RAATTY	2 cut(s)	47, 746
AcuI	CTGAAG	4 cut(s)	392, 724, 840, 1898
AfaI	GTAC	5 cut(s)	825, 849, 1466, 1655, 1803
AfiI	CCNNNNNNNGG	4 cut(s)	712, 905, 1526, 1879
AflII	CTTAAG	1 cut(s)	922
AflIII	ACRYGT	1 cut(s)	885
AjnI	CCWGG	4 cut(s)	6, 590, 1519, 1618
AloI	GAACNNNNNNTCC	2 cut(s)	1540, 1572
Alw21I	GWGCWC	3 cut(s)	625, 1045, 1641
Alw26I	GTCTC	2 cut(s)	908, 1561
AlwI	GGATC	3 cut(s)	89, 953, 1767
AlwNI	CAGNNNCTG	1 cut(s)	1649
Ama87I	CYCGRG	1 cut(s)	144
AoxI	GGCC	5 cut(s)	123, 138, 703, 985, 1228
ApeKI	GCWGC	5 cut(s)	40, 395, 570, 1541, 1595
ApoI	RAATTY	2 cut(s)	47, 746
AseI	ATTAAT	1 cut(s)	1344
AspLEI	GCGC	2 cut(s)	35, 331
AspS9I	GGNCC	5 cut(s)	123, 138, 704, 715, 782
AsuC2I	CCSGG	2 cut(s)	145, 146
AsuHPI	GGTGA	5 cut(s)	176, 1193, 1239, 1269, 1897
AvaI	CYCGRG	1 cut(s)	144
AvaII	GGWCC	2 cut(s)	715, 782
BaeI	ACNNNNGTAYC	2 cut(s)	1373, 1406
BalI	TGGCCA	1 cut(s)	1230
BanI	GGYRCC	1 cut(s)	1403
BanII	GRGCYC	2 cut(s)	1045, 1641
BauI	CACGAG	1 cut(s)	1449
Bbv12I	GWGCWC	3 cut(s)	625, 1045, 1641
BbvCI	CCTCAGC	2 cut(s)	435, 1704
BbvI	GCAGC	5 cut(s)	27, 382, 582, 1553, 1607
BccI	CCATC	7 cut(s)	287, 429, 687, 695, 907, 1704, 1881
BceAI	ACGGC	3 cut(s)	20, 189, 972
BciT130I	CCWGG	4 cut(s)	8, 592, 1521, 1620
BclI	TGATCA	1 cut(s)	535
BcnI	CCSGG	2 cut(s)	145, 146
BcoDI	GTCTC	2 cut(s)	908, 1561
BfaI	CTAG	3 cut(s)	698, 1052, 1770
BfmI	CTRYAG	3 cut(s)	721, 1325, 1593
BfrI	CTTAAG	1 cut(s)	922
BfuAI	ACCTGC	2 cut(s)	1218, 1322
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	6 cut(s)	41, 177, 396, 571, 1542, 1596
BlsI	GCNGC	6 cut(s)	42, 178, 397, 572, 1543, 1597
Bme1390I	CCNGG	6 cut(s)	8, 145, 146, 592, 1521, 1620
Bme18I	GGWCC	2 cut(s)	715, 782
BmeT110I	CYCGRG	1 cut(s)	144
BmgT120I	GGNCC	5 cut(s)	123, 138, 704, 715, 782
BmiI	GGNNCC	4 cut(s)	24, 130, 1405, 1722
BmrFI	CCNGG	6 cut(s)	8, 145, 146, 592, 1521, 1620
BmrI	ACTGGG	2 cut(s)	1257, 1652
BmsI	GCATC	4 cut(s)	340, 421, 952, 1297
BmuI	ACTGGG	2 cut(s)	1257, 1652
BoxI	GACNNNNGTC	1 cut(s)	8
BpmI	CTGGAG	1 cut(s)	1641
Bpu10I	CCTNAGC	2 cut(s)	435, 1704
BpuEI	CTTGAG	3 cut(s)	356, 1335, 1587
BpuMI	CCSGG	2 cut(s)	145, 146
Bsa29I	ATCGAT	1 cut(s)	957
BsaBI	GATNNNNATC	2 cut(s)	420, 1695
BsaJI	CCNNGG	7 cut(s)	6, 144, 171, 982, 1286, 1301, 1373
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	1234, 1264, 1540, 1570
Bsc4I	CCNNNNNNNGG	4 cut(s)	712, 905, 1526, 1879
Bse118I	RCCGGY	1 cut(s)	79
Bse1I	ACTGG	7 cut(s)	87, 325, 785, 1263, 1407, 1658, 1821
Bse3DI	GCAATG	1 cut(s)	74
Bse8I	GATNNNNATC	2 cut(s)	420, 1695
BseBI	CCWGG	4 cut(s)	8, 592, 1521, 1620
BseCI	ATCGAT	1 cut(s)	957
BseDI	CCNNGG	7 cut(s)	6, 144, 171, 982, 1286, 1301, 1373
BseGI	GGATG	6 cut(s)	346, 421, 847, 1312, 1467, 1888
BseJI	GATNNNNATC	2 cut(s)	420, 1695
BseLI	CCNNNNNNNGG	4 cut(s)	712, 905, 1526, 1879
BseMI	GCAATG	1 cut(s)	74
BseMII	CTCAG	6 cut(s)	413, 426, 1641, 1656, 1718, 1755
BseNI	ACTGG	7 cut(s)	87, 325, 785, 1263, 1407, 1658, 1821
BseRI	GAGGAG	1 cut(s)	1768
BseXI	GCAGC	5 cut(s)	27, 382, 582, 1553, 1607
BseYI	CCCAGC	1 cut(s)	1332
BsgI	GTGCAG	1 cut(s)	236
Bsh1236I	CGCG	1 cut(s)	33
BshFI	GGCC	5 cut(s)	125, 140, 705, 987, 1230
BshNI	GGYRCC	1 cut(s)	1403
BshVI	ATCGAT	1 cut(s)	957
BsiHKAI	GWGCWC	3 cut(s)	625, 1045, 1641
BsiHKCI	CYCGRG	1 cut(s)	144
BsiSI	CCGG	6 cut(s)	20, 44, 80, 126, 145, 187
BslFI	GGGAC	4 cut(s)	75, 1315, 1474, 1482
BslI	CCNNNNNNNGG	4 cut(s)	712, 905, 1526, 1879
BsmAI	GTCTC	2 cut(s)	908, 1561
BsmFI	GGGAC	4 cut(s)	75, 1315, 1474, 1482
BsmI	GAATGC	3 cut(s)	1631, 1868, 1938
BsnI	GGCC	5 cut(s)	125, 140, 705, 987, 1230
BsoBI	CYCGRG	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	625, 1045, 1641
Bsp143I	GATC	5 cut(s)	94, 535, 553, 958, 1772
Bsp19I	CCATGG	2 cut(s)	1286, 1301
BspACI	CCGC	6 cut(s)	31, 71, 112, 136, 176, 1901
BspANI	GGCC	5 cut(s)	125, 140, 705, 987, 1230
BspCNI	CTCAG	6 cut(s)	412, 427, 1642, 1655, 1717, 1756
BspDI	ATCGAT	1 cut(s)	957
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	4 cut(s)	24, 130, 1405, 1722
BspMAI	CTGCAG	1 cut(s)	1597
BspMI	ACCTGC	2 cut(s)	1218, 1322
BspPI	GGATC	3 cut(s)	89, 953, 1767
BspT107I	GGYRCC	1 cut(s)	1403
BspTI	CTTAAG	1 cut(s)	922
BsrBI	CCGCTC	2 cut(s)	136, 1903
BsrDI	GCAATG	1 cut(s)	74
BsrFI	RCCGGY	1 cut(s)	79
BsrI	ACTGG	7 cut(s)	87, 325, 785, 1263, 1407, 1658, 1821
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	7 cut(s)	6, 144, 171, 982, 1286, 1301, 1373
BssMI	GATC	5 cut(s)	94, 535, 553, 958, 1772
BssSI	CACGAG	1 cut(s)	1449
BssT1I	CCWWGG	4 cut(s)	982, 1286, 1301, 1373
Bst2BI	CACGAG	1 cut(s)	1449
Bst2UI	CCWGG	4 cut(s)	8, 592, 1521, 1620
Bst4CI	ACNGT	9 cut(s)	156, 313, 715, 878, 1153, 1196, 1329, 1823, 1830
Bst6I	CTCTTC	4 cut(s)	375, 855, 1428, 1842
BstAFI	CTTAAG	1 cut(s)	922
BstAPI	GCANNNNNTGC	1 cut(s)	1679
BstC8I	GCNNGC	5 cut(s)	81, 138, 1045, 1049, 1866
BstDEI	CTNAG	7 cut(s)	399, 435, 854, 1642, 1650, 1704, 1764
BstDSI	CCRYGG	3 cut(s)	171, 1286, 1301
BstF5I	GGATG	6 cut(s)	346, 421, 847, 1312, 1467, 1888
BstFNI	CGCG	1 cut(s)	33
BstHHI	GCGC	2 cut(s)	35, 331
BstKTI	GATC	5 cut(s)	97, 538, 556, 961, 1775
BstMAI	GTCTC	2 cut(s)	908, 1561
BstMBI	GATC	5 cut(s)	94, 535, 553, 958, 1772
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 1053, 1679
BstNI	CCWGG	4 cut(s)	8, 592, 1521, 1620
BstNSI	RCATGY	2 cut(s)	889, 1388
BstPAI	GACNNNNGTC	1 cut(s)	8
BstSCI	CCNGG	6 cut(s)	6, 143, 144, 590, 1519, 1618
BstSFI	CTRYAG	3 cut(s)	721, 1325, 1593
BstUI	CGCG	1 cut(s)	33
BstV1I	GCAGC	5 cut(s)	27, 382, 582, 1553, 1607
BstX2I	RGATCY	1 cut(s)	1772
BstXI	CCANNNNNNTGG	1 cut(s)	1736
BstYI	RGATCY	1 cut(s)	1772
Bsu15I	ATCGAT	1 cut(s)	957
BsuRI	GGCC	5 cut(s)	125, 140, 705, 987, 1230
BsuTUI	ATCGAT	1 cut(s)	957
BtgI	CCRYGG	3 cut(s)	171, 1286, 1301
BtgZI	GCGATG	1 cut(s)	407
BtsCI	GGATG	6 cut(s)	346, 421, 847, 1312, 1467, 1888
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	318, 331
BveI	ACCTGC	2 cut(s)	1218, 1322
Cac8I	GCNNGC	5 cut(s)	81, 138, 1045, 1049, 1866
CaiI	CAGNNNCTG	1 cut(s)	1649
CfoI	GCGC	2 cut(s)	35, 331
Cfr10I	RCCGGY	1 cut(s)	79
Cfr13I	GGNCC	5 cut(s)	123, 138, 704, 715, 782
Cfr9I	CCCGGG	1 cut(s)	144
ClaI	ATCGAT	1 cut(s)	957
CseI	GACGC	1 cut(s)	1467
Csp6I	GTAC	5 cut(s)	824, 848, 1465, 1654, 1802
CviQI	GTAC	5 cut(s)	824, 848, 1465, 1654, 1802
DdeI	CTNAG	7 cut(s)	399, 435, 854, 1642, 1650, 1704, 1764
DpnI	GATC	5 cut(s)	96, 537, 555, 960, 1774
DpnII	GATC	5 cut(s)	94, 535, 553, 958, 1772
DraI	TTTAAA	2 cut(s)	777, 1033
EaeI	YGGCCR	2 cut(s)	985, 1228
Eam1104I	CTCTTC	4 cut(s)	375, 855, 1428, 1842
EarI	CTCTTC	4 cut(s)	375, 855, 1428, 1842
EciI	GGCGGA	1 cut(s)	60
Ecl136II	GAGCTC	2 cut(s)	1043, 1639
Eco130I	CCWWGG	4 cut(s)	982, 1286, 1301, 1373
Eco24I	GRGCYC	2 cut(s)	1045, 1641
Eco32I	GATATC	1 cut(s)	202
Eco47I	GGWCC	2 cut(s)	715, 782
Eco53kI	GAGCTC	2 cut(s)	1043, 1639
Eco57I	CTGAAG	4 cut(s)	392, 724, 840, 1898
Eco88I	CYCGRG	1 cut(s)	144
EcoICRI	GAGCTC	2 cut(s)	1043, 1639
EcoRII	CCWGG	4 cut(s)	6, 590, 1519, 1618
EcoRV	GATATC	1 cut(s)	202
EcoT14I	CCWWGG	4 cut(s)	982, 1286, 1301, 1373
EcoT22I	ATGCAT	2 cut(s)	458, 1940
EcoT38I	GRGCYC	2 cut(s)	1045, 1641
ErhI	CCWWGG	4 cut(s)	982, 1286, 1301, 1373
FaqI	GGGAC	4 cut(s)	75, 1315, 1474, 1482
FauI	CCCGC	3 cut(s)	105, 129, 1908
FauNDI	CATATG	1 cut(s)	646
FbaI	TGATCA	1 cut(s)	535
FblI	GTMKAC	1 cut(s)	882
Fnu4HI	GCNGC	6 cut(s)	41, 177, 396, 571, 1542, 1596
FokI	GGATG	6 cut(s)	353, 428, 854, 1319, 1454, 1895
FriOI	GRGCYC	2 cut(s)	1045, 1641
Fsp4HI	GCNGC	6 cut(s)	41, 177, 396, 571, 1542, 1596
FspAI	RTGCGCAY	1 cut(s)	330
FspBI	CTAG	3 cut(s)	698, 1052, 1770
FspI	TGCGCA	1 cut(s)	330
GlaI	GCGC	2 cut(s)	34, 330
GluI	GCNGC	6 cut(s)	41, 177, 396, 571, 1542, 1596
GsaI	CCCAGC	1 cut(s)	1336
GsuI	CTGGAG	1 cut(s)	1641
HaeIII	GGCC	5 cut(s)	125, 140, 705, 987, 1230
HapII	CCGG	6 cut(s)	20, 44, 80, 126, 145, 187
HgaI	GACGC	1 cut(s)	1467
HhaI	GCGC	2 cut(s)	35, 331
Hin6I	GCGC	2 cut(s)	33, 329
HinP1I	GCGC	2 cut(s)	33, 329
HinfI	GANTC	9 cut(s)	116, 163, 181, 607, 1060, 1297, 1607, 1766, 1839
HpaII	CCGG	6 cut(s)	20, 44, 80, 126, 145, 187
HphI	GGTGA	5 cut(s)	176, 1193, 1239, 1269, 1897
Hpy166II	GTNNAC	2 cut(s)	883, 1826
Hpy188III	TCNNGA	8 cut(s)	92, 290, 335, 524, 698, 1604, 1770, 1836
Hpy8I	GTNNAC	2 cut(s)	883, 1826
Hpy99I	CGWCG	1 cut(s)	103
HpyCH4III	ACNGT	9 cut(s)	156, 313, 715, 878, 1153, 1196, 1329, 1823, 1830
HpyCH4IV	ACGT	2 cut(s)	237, 1463
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 1053, 1679
HpyF3I	CTNAG	7 cut(s)	399, 435, 854, 1642, 1650, 1704, 1764
HpySE526I	ACGT	2 cut(s)	237, 1463
HspAI	GCGC	2 cut(s)	33, 329
KroI	GCCGGC	1 cut(s)	79
KroNI	GCCGGC	1 cut(s)	81
Ksp22I	TGATCA	1 cut(s)	535
Kzo9I	GATC	5 cut(s)	94, 535, 553, 958, 1772
LmnI	GCTCC	6 cut(s)	22, 128, 1040, 1174, 1561, 1720
Lsp1109I	GCAGC	5 cut(s)	27, 382, 582, 1553, 1607
LweI	GCATC	4 cut(s)	340, 421, 952, 1297
MaeI	CTAG	3 cut(s)	698, 1052, 1770
MaeII	ACGT	2 cut(s)	237, 1463
MaeIII	GTNAC	4 cut(s)	233, 349, 1068, 1275
MalI	GATC	5 cut(s)	96, 537, 555, 960, 1774
MbiI	CCGCTC	2 cut(s)	136, 1903
MboI	GATC	5 cut(s)	94, 535, 553, 958, 1772
MboII	GAAGA	9 cut(s)	278, 392, 684, 872, 1196, 1445, 1450, 1808, 1859
MfeI	CAATTG	1 cut(s)	105
MflI	RGATCY	1 cut(s)	1772
MhlI	GDGCHC	3 cut(s)	625, 1045, 1641
MlsI	TGGCCA	1 cut(s)	1230
MluCI	AATT	8 cut(s)	47, 105, 636, 746, 1345, 1489, 1579, 1713
MluNI	TGGCCA	1 cut(s)	1230
MlyI	GAGTC	6 cut(s)	125, 175, 616, 1616, 1775, 1848
MmeI	TCCRAC	1 cut(s)	1152
Mox20I	TGGCCA	1 cut(s)	1230
Mph1103I	ATGCAT	2 cut(s)	458, 1940
MroNI	GCCGGC	1 cut(s)	79
MscI	TGGCCA	1 cut(s)	1230
MslI	CAYNNNNRTG	3 cut(s)	360, 1398, 1734
Msp20I	TGGCCA	1 cut(s)	1230
MspA1I	CMGCKG	1 cut(s)	1544
MspCI	CTTAAG	1 cut(s)	922
MspI	CCGG	6 cut(s)	20, 44, 80, 126, 145, 187
MspR9I	CCNGG	6 cut(s)	8, 145, 146, 592, 1521, 1620
MunI	CAATTG	1 cut(s)	105
Mva1269I	GAATGC	3 cut(s)	1631, 1868, 1938
MvaI	CCWGG	4 cut(s)	8, 592, 1521, 1620
MvnI	CGCG	1 cut(s)	33
MwoI	GCNNNNNNNGC	3 cut(s)	137, 1053, 1679
NaeI	GCCGGC	1 cut(s)	81
NciI	CCSGG	2 cut(s)	145, 146
NcoI	CCATGG	2 cut(s)	1286, 1301
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	94, 535, 553, 958, 1772
NgoMIV	GCCGGC	1 cut(s)	79
NlaIV	GGNNCC	4 cut(s)	24, 130, 1405, 1722
NmeAIII	GCCGAG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	1275
NsbI	TGCGCA	1 cut(s)	330
NsiI	ATGCAT	2 cut(s)	458, 1940
NspI	RCATGY	2 cut(s)	889, 1388
PciI	ACATGT	1 cut(s)	885
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PctI	GAATGC	3 cut(s)	1631, 1868, 1938
PdiI	GCCGGC	1 cut(s)	81
PfeI	GAWTC	3 cut(s)	163, 1060, 1297
PkrI	GCNGC	6 cut(s)	42, 178, 397, 572, 1543, 1597
PleI	GAGTC	6 cut(s)	124, 175, 615, 1615, 1774, 1847
PpsI	GAGTC	6 cut(s)	124, 175, 615, 1615, 1774, 1847
PscI	ACATGT	1 cut(s)	885
PshAI	GACNNNNGTC	1 cut(s)	8
PshBI	ATTAAT	1 cut(s)	1344
Psp124BI	GAGCTC	2 cut(s)	1045, 1641
Psp6I	CCWGG	4 cut(s)	6, 590, 1519, 1618
PspFI	CCCAGC	1 cut(s)	1332
PspGI	CCWGG	4 cut(s)	6, 590, 1519, 1618
PspN4I	GGNNCC	4 cut(s)	24, 130, 1405, 1722
PspPI	GGNCC	5 cut(s)	123, 138, 704, 715, 782
PsrI	GAACNNNNNNTAC	2 cut(s)	342, 374
PstI	CTGCAG	1 cut(s)	1597
PstNI	CAGNNNCTG	1 cut(s)	1649
PsuI	RGATCY	1 cut(s)	1772
PvuII	CAGCTG	1 cut(s)	1544
RsaI	GTAC	5 cut(s)	825, 849, 1466, 1655, 1803
RsaNI	GTAC	5 cut(s)	824, 848, 1465, 1654, 1802
RseI	CAYNNNNRTG	3 cut(s)	360, 1398, 1734
SacI	GAGCTC	2 cut(s)	1045, 1641
SatI	GCNGC	6 cut(s)	41, 177, 396, 571, 1542, 1596
Sau3AI	GATC	5 cut(s)	94, 535, 553, 958, 1772
Sau96I	GGNCC	5 cut(s)	123, 138, 704, 715, 782
SchI	GAGTC	6 cut(s)	125, 175, 616, 1616, 1775, 1848
ScrFI	CCNGG	6 cut(s)	8, 145, 146, 592, 1521, 1620
SduI	GDGCHC	3 cut(s)	625, 1045, 1641
SfaNI	GCATC	4 cut(s)	340, 421, 952, 1297
SfcI	CTRYAG	3 cut(s)	721, 1325, 1593
SinI	GGWCC	2 cut(s)	715, 782
SmaI	CCCGGG	1 cut(s)	146
SmiMI	CAYNNNNRTG	3 cut(s)	360, 1398, 1734
SmlI	CTYRAG	4 cut(s)	335, 922, 1350, 1602
SmoI	CTYRAG	4 cut(s)	335, 922, 1350, 1602
Sse9I	AATT	8 cut(s)	47, 105, 636, 746, 1345, 1489, 1579, 1713
SsiI	CCGC	6 cut(s)	31, 71, 112, 136, 176, 1901
SspI	AATATT	2 cut(s)	764, 1342
SspMI	CTAG	3 cut(s)	698, 1052, 1770
SstI	GAGCTC	2 cut(s)	1045, 1641
StyD4I	CCNGG	6 cut(s)	6, 143, 144, 590, 1519, 1618
StyI	CCWWGG	4 cut(s)	982, 1286, 1301, 1373
TaaI	ACNGT	9 cut(s)	156, 313, 715, 878, 1153, 1196, 1329, 1823, 1830
TaiI	ACGT	2 cut(s)	240, 1466
TaqI	TCGA	4 cut(s)	957, 1015, 1842, 1912
TasI	AATT	8 cut(s)	47, 105, 636, 746, 1345, 1489, 1579, 1713
TatI	WGTACW	1 cut(s)	847
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	3 cut(s)	163, 1060, 1297
TscAI	CASTG	2 cut(s)	325, 331
TseFI	GTSAC	1 cut(s)	1275
TseI	GCWGC	5 cut(s)	40, 395, 570, 1541, 1595
Tsp45I	GTSAC	1 cut(s)	1275
TspDTI	ATGAA	9 cut(s)	350, 405, 677, 849, 1107, 1146, 1746, 1860, 1899
TspGWI	ACGGA	2 cut(s)	87, 1944
TspMI	CCCGGG	1 cut(s)	144
TspRI	CASTG	2 cut(s)	325, 331
Vha464I	CTTAAG	1 cut(s)	922
VpaK11BI	GGWCC	2 cut(s)	715, 782
VspI	ATTAAT	1 cut(s)	1344
XapI	RAATTY	2 cut(s)	47, 746
XbaI	TCTAGA	2 cut(s)	697, 1769
XceI	RCATGY	2 cut(s)	889, 1388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1813
XmaI	CCCGGG	1 cut(s)	144
XmiI	GTMKAC	1 cut(s)	882
XspI	CTAG	3 cut(s)	698, 1052, 1770
Zsp2I	ATGCAT	2 cut(s)	458, 1940

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.