Rorug06G0059100

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000452
Physical Location & Seq
Forward (+)
7950767 .. 7951981
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0059100.1

Sequence Viewer

Length: 249 bp
ATGAAGAGTGTGAAATCAGCAGAAGGGGAAATGCAGACCAAGCCTTTCTTGGAAGTCTGCAAGCAGATTTTGCCGGTTATAGAGAAGTTTGGAGCTGCTATGACTCTTGTTAAATCTGTTCAGGTGCTAATGCAACCTTTGGGCAATCGCGTTCATAGCGTACCACTTGAACAAATTTGGAACATAGGAAAAGAATCAGAAGACACAAAGCAAGCACACTTTAACATGGAATTAATGCTTCCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

82

Amino Acids

9.21

Weight (kDa)

6.72

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000452)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 150
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 1 cut(s) 170
AluBI AGCT 2 cut(s) 95, 245
AluI AGCT 2 cut(s) 95, 245
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 174
AseI ATTAAT 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 1 cut(s) 82
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BpiI GAAGAC 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 73
BseXI GCAGC 1 cut(s) 82
Bsh1236I CGCG 1 cut(s) 150
BsiSI CCGG 1 cut(s) 74
BspFNI CGCG 1 cut(s) 150
BsrFI RCCGGY 1 cut(s) 73
BssAI RCCGGY 1 cut(s) 73
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 2 cut(s) 62, 213
BstFNI CGCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 3 cut(s) 40, 70, 156
BstUI CGCG 1 cut(s) 150
BstV1I GCAGC 1 cut(s) 82
BstV2I GAAGAC 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 62, 213
Cfr10I RCCGGY 1 cut(s) 73
Csp6I GTAC 1 cut(s) 161
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 43, 95, 245
CviKI_1 RGCY 3 cut(s) 43, 95, 245
CviQI GTAC 1 cut(s) 161
FaeI CATG 1 cut(s) 229
FaiI YATR 5 cut(s) 80, 101, 156, 185, 227
FalI AAGNNNNNCTT 2 cut(s) 32, 64
FatI CATG 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 229
HinfI GANTC 2 cut(s) 103, 194
HpaII CCGG 1 cut(s) 74
Hpy188I TCNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 34, 60, 133
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 70, 156
Hsp92II CATG 1 cut(s) 229
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 2 cut(s) 87, 107
Lsp1109I GCAGC 1 cut(s) 82
MboII GAAGA 2 cut(s) 16, 212
MluCI AATT 2 cut(s) 174, 230
MlyI GAGTC 1 cut(s) 97
MseI TTAA 3 cut(s) 111, 222, 233
MspI CCGG 1 cut(s) 74
MvnI CGCG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 40, 70, 156
NlaIII CATG 1 cut(s) 229
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
PshBI ATTAAT 1 cut(s) 233
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SaqAI TTAA 3 cut(s) 111, 222, 233
SatI GCNGC 1 cut(s) 96
SchI GAGTC 1 cut(s) 97
SetI ASST 4 cut(s) 97, 126, 139, 247
Sse9I AATT 2 cut(s) 174, 230
TasI AATT 2 cut(s) 174, 230
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 3 cut(s) 111, 222, 233
Tru9I TTAA 3 cut(s) 111, 222, 233
TseI GCWGC 1 cut(s) 95
TspDTI ATGAA 2 cut(s) 17, 143
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 1 cut(s) 174
XcmI CCANNNNNNNNNTGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.