Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000452

Physical Location & Seq

Genomic Coordinates Reverse (-)

71142877 .. 71143935

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0524200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGTACACACAATCTTCTCTTCCACTCGCCCATGGCGGCGTGCCGTCGACGTCGTCATTCCTGCCGGAGCCGGAACCAGGTAGCATAGAAGACGCTCTGCTCCAATTGGTCCAGGACCACCATCACAACTCCCTCAAGCTTCGCGAACGCACAGATAGGGCGAAGAAGGACGCGATCAAGAAGGCGGCGCGTGCGGCGGAGCTGATGGTGGAGGCGGTGAACGGCGGCGTCCAAGAGTCGTTCGTAAACGAGAAGCGAATCGAGCTTGAGATTCGGGCTTTGGCGGCCACCATTACCCGATTCACCAAGCAAACGGATCAGTGGCTCACCGTCACTCATTCTATGAACACTGCCATCAAGGAAATTGGGGACTTTGAGAATTGGATGAAGATCATGGAGTTTGATTGTAAGAGCATCACTGCAGCTATACACAATATTCACCAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

149

Amino Acids

16.69

Weight (kDa)

6.15

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCN5L1	PF06320	36 - 148	7.8e-40	GCN5-like protein 1 (GCN5L1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000452)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0066100 Rorug01G0066100 Rorug01G0069900 Rorug01G0089700 Rorug01G0090100 Rorug01G0097600 Rorug01G0099600 Rorug01G0101900 Rorug01G0102400 Rorug01G0118300 Rorug01G0124800 Rorug01G0169500 Rorug01G0238100 Rorug01G0451600 Rorug02G0188700 Rorug02G0229300 Rorug02G0253000 Rorug02G0256200 Rorug02G0258900 Rorug02G0339200 Rorug02G0392100 Rorug02G0491500 Rorug03G0141200 Rorug03G0192500 Rorug03G0200300 Rorug03G0218600 Rorug03G0269500 Rorug03G0269700 Rorug03G0272400 Rorug03G0276400 Rorug03G0283800 Rorug03G0334100 Rorug03G0356200 Rorug04G0002200 Rorug04G0008300 Rorug04G0031200 Rorug04G0040800 Rorug04G0063000 Rorug04G0069500.1 Rorug04G0070200 Rorug04G0114400 Rorug04G0181100 Rorug04G0205700 Rorug05G0004000 Rorug05G0018000 Rorug05G0018100 Rorug05G0090500 Rorug05G0108800 Rorug05G0118900 Rorug05G0202300 Rorug05G0214200 Rorug05G0243800 Rorug05G0243900 Rorug05G0266300 Rorug05G0272500 Rorug05G0276400 Rorug05G0291500 Rorug05G0293800 Rorug05G0350400 Rorug05G0360900 Rorug05G0369500 Rorug05G0370100 Rorug05G0370500 Rorug05G0407800 Rorug05G0418900 Rorug05G0524200 Rorug05G0526800 Rorug05G0547200 Rorug06G0004100 Rorug06G0015000 Rorug06G0027300 Rorug06G0048200 Rorug06G0059100 Rorug06G0066200 Rorug06G0128100 Rorug06G0363800.1 Rorug07G0031500 Rorug07G0184700 Rorug07G0185600 Rorug07G0189600 Rorug07G0196500 Rorug07G0200700 Rorug07G0219700 Rorug07G0219900 Rorug07G0219900 Rorug07G0223000 Rorug07G0223000 Rorug07G0230800 Rorug07G0243500 Rorug07G0244700 Rorug07G0245700 Rorug07G0279800 Rorug07G0305800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	3 cut(s)	144, 173, 190
AciI	CCGC	7 cut(s)	36, 185, 194, 197, 215, 225, 284
AclWI	GGATC	1 cut(s)	324
AcoI	YGGCCR	1 cut(s)	285
AcyI	GRCGYC	2 cut(s)	50, 228
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	76, 111
AluBI	AGCT	5 cut(s)	139, 202, 265, 425, 446
AluI	AGCT	5 cut(s)	139, 202, 265, 425, 446
AlwI	GGATC	1 cut(s)	324
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	2 cut(s)	109, 115
AsuHPI	GGTGA	4 cut(s)	229, 295, 319, 431
AvaII	GGWCC	2 cut(s)	109, 115
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	3 cut(s)	129, 199, 362
BceAI	ACGGC	2 cut(s)	28, 238
BciT130I	CCWGG	2 cut(s)	78, 113
BfmI	CTRYAG	1 cut(s)	420
BisI	GCNGC	6 cut(s)	37, 186, 195, 226, 285, 423
BlsI	GCNGC	6 cut(s)	38, 187, 196, 227, 286, 424
Bme1390I	CCNGG	2 cut(s)	78, 113
Bme18I	GGWCC	2 cut(s)	109, 115
BmgT120I	GGNCC	2 cut(s)	109, 115
BmiI	GGNNCC	2 cut(s)	69, 75
BmrFI	CCNGG	2 cut(s)	78, 113
BmsI	GCATC	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	96
BpuEI	CTTGAG	2 cut(s)	119, 287
BsaBI	GATNNNNATC	1 cut(s)	389
BsaHI	GRCGYC	2 cut(s)	50, 228
BsaJI	CCNNGG	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	77
Bse8I	GATNNNNATC	1 cut(s)	389
BseBI	CCWGG	2 cut(s)	78, 113
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	1 cut(s)	390
BseJI	GATNNNNATC	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	434
Bsh1236I	CGCG	3 cut(s)	144, 173, 190
BshFI	GGCC	1 cut(s)	287
BsiSI	CCGG	2 cut(s)	65, 71
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	1 cut(s)	77
BsmFI	GGGAC	1 cut(s)	383
BsnI	GGCC	1 cut(s)	287
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	174, 316, 390
Bsp19I	CCATGG	1 cut(s)	31
Bsp68I	TCGCGA	1 cut(s)	144
BspACI	CCGC	7 cut(s)	36, 185, 194, 197, 215, 225, 284
BspANI	GGCC	1 cut(s)	287
BspFNI	CGCG	3 cut(s)	144, 173, 190
BspLI	GGNNCC	2 cut(s)	69, 75
BspMAI	CTGCAG	1 cut(s)	424
BspPI	GGATC	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	3 cut(s)	174, 316, 390
BssNI	GRCGYC	2 cut(s)	50, 228
BssT1I	CCWWGG	1 cut(s)	31
Bst2UI	CCWGG	2 cut(s)	78, 113
Bst4CI	ACNGT	1 cut(s)	331
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	2 cut(s)	50, 228
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	41, 192
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	3 cut(s)	144, 173, 190
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	3 cut(s)	177, 319, 393
BstMBI	GATC	3 cut(s)	174, 316, 390
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
BstNI	CCWGG	2 cut(s)	78, 113
BstSCI	CCNGG	2 cut(s)	76, 111
BstSFI	CTRYAG	1 cut(s)	420
BstUI	CGCG	3 cut(s)	144, 173, 190
BstV1I	GCAGC	1 cut(s)	434
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	390
BtsI	GCAGTG	2 cut(s)	348, 417
BtsIMutI	CAGTG	3 cut(s)	326, 348, 417
BtuMI	TCGCGA	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	41, 192
CfoI	GCGC	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	109, 115
CseI	GACGC	3 cut(s)	101, 179, 217
CsiI	ACCWGGT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	32, 394
CviJI	RGCY	9 cut(s)	70, 139, 202, 265, 278, 287, 325, 425, 446
CviKI_1	RGCY	9 cut(s)	70, 139, 202, 265, 278, 287, 325, 425, 446
CviQI	GTAC	1 cut(s)	4
DpnI	GATC	3 cut(s)	176, 318, 392
DpnII	GATC	3 cut(s)	174, 316, 390
EaeI	YGGCCR	1 cut(s)	285
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
EciI	GGCGGA	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	109, 115
EcoRII	CCWGG	2 cut(s)	76, 111
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	2 cut(s)	35, 397
FaiI	YATR	5 cut(s)	33, 86, 344, 395, 428
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	2 cut(s)	31, 393
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	6 cut(s)	37, 186, 195, 226, 285, 423
FokI	GGATG	1 cut(s)	397
Fsp4HI	GCNGC	6 cut(s)	37, 186, 195, 226, 285, 423
GlaI	GCGC	1 cut(s)	189
GluI	GCNGC	6 cut(s)	37, 186, 195, 226, 285, 423
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	2 cut(s)	65, 71
HgaI	GACGC	3 cut(s)	101, 179, 217
HhaI	GCGC	1 cut(s)	190
Hin1I	GRCGYC	2 cut(s)	50, 228
Hin1II	CATG	2 cut(s)	35, 397
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HindIII	AAGCTT	2 cut(s)	137, 444
HinfI	GANTC	4 cut(s)	236, 258, 271, 300
HpaII	CCGG	2 cut(s)	65, 71
HphI	GGTGA	4 cut(s)	229, 295, 319, 431
Hpy166II	GTNNAC	4 cut(s)	6, 48, 220, 247
Hpy188III	TCNNGA	2 cut(s)	143, 178
Hpy8I	GTNNAC	4 cut(s)	6, 48, 220, 247
Hpy99I	CGWCG	3 cut(s)	49, 52, 55
HpyAV	CCTTC	2 cut(s)	160, 175
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	422
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
HpySE526I	ACGT	1 cut(s)	50
Hsp92I	GRCGYC	2 cut(s)	50, 228
Hsp92II	CATG	2 cut(s)	35, 397
HspAI	GCGC	1 cut(s)	188
Kzo9I	GATC	3 cut(s)	174, 316, 390
LmnI	GCTCC	3 cut(s)	67, 105, 199
LpnPI	CCDG	7 cut(s)	63, 74, 78, 84, 90, 98, 125
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	1 cut(s)	423
MabI	ACCWGGT	1 cut(s)	76
MaeII	ACGT	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	3 cut(s)	176, 318, 392
MboI	GATC	3 cut(s)	174, 316, 390
MboII	GAAGA	5 cut(s)	6, 11, 101, 175, 400
MfeI	CAATTG	1 cut(s)	104
MluCI	AATT	3 cut(s)	104, 363, 379
MlyI	GAGTC	1 cut(s)	245
MnlI	CCTC	2 cut(s)	143, 205
MspI	CCGG	2 cut(s)	65, 71
MspR9I	CCNGG	2 cut(s)	78, 113
MunI	CAATTG	1 cut(s)	104
MvaI	CCWGG	2 cut(s)	78, 113
MvnI	CGCG	3 cut(s)	144, 173, 190
MwoI	GCNNNNNNNGC	4 cut(s)	191, 194, 262, 284
NcoI	CCATGG	1 cut(s)	31
NdeII	GATC	3 cut(s)	174, 316, 390
NlaIII	CATG	2 cut(s)	35, 397
NlaIV	GGNNCC	2 cut(s)	69, 75
NmuCI	GTSAC	1 cut(s)	331
NruI	TCGCGA	1 cut(s)	144
PfeI	GAWTC	3 cut(s)	258, 271, 300
PflFI	GACNNNGTC	1 cut(s)	52
PfoI	TCCNGGA	1 cut(s)	111
PkrI	GCNGC	6 cut(s)	38, 187, 196, 227, 286, 424
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	76, 111
PspGI	CCWGG	2 cut(s)	76, 111
PspN4I	GGNNCC	2 cut(s)	69, 75
PspPI	GGNCC	2 cut(s)	109, 115
PstI	CTGCAG	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	52
RruI	TCGCGA	1 cut(s)	144
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SalI	GTCGAC	1 cut(s)	46
SatI	GCNGC	6 cut(s)	37, 186, 195, 226, 285, 423
Sau3AI	GATC	3 cut(s)	174, 316, 390
Sau96I	GGNCC	2 cut(s)	109, 115
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	2 cut(s)	78, 113
SetI	ASST	7 cut(s)	53, 82, 141, 204, 267, 427, 448
SexAI	ACCWGGT	1 cut(s)	76
SfaNI	GCATC	1 cut(s)	423
SfcI	CTRYAG	1 cut(s)	420
SgrDI	CGTCGACG	1 cut(s)	46
SinI	GGWCC	2 cut(s)	109, 115
SmlI	CTYRAG	2 cut(s)	134, 266
SmoI	CTYRAG	2 cut(s)	134, 266
Sse9I	AATT	3 cut(s)	104, 363, 379
SsiI	CCGC	7 cut(s)	36, 185, 194, 197, 215, 225, 284
SspI	AATATT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	76, 111
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	47, 261
TasI	AATT	3 cut(s)	104, 363, 379
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	5 cut(s)	39, 188, 197, 228, 287
TfiI	GAWTC	3 cut(s)	258, 271, 300
TscAI	CASTG	3 cut(s)	326, 355, 424
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	422
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	359, 401
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	326, 355, 424
Tth111I	GACNNNGTC	1 cut(s)	52
VpaK11BI	GGWCC	2 cut(s)	109, 115
XmiI	GTMKAC	1 cut(s)	47
ZraI	GACGTC	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.