Rorug05G0547200

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
73645241 .. 73651174
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0547200.1

Sequence Viewer

Length: 1443 bp
ATGCTTATGGGTTCAAATTCAGTTGTGGATATGATAGAGGCCTCCTCGGGGGTTCATTTTTCTGGATTTCACATGGATGGTTTGCAGCAAAGACTGAAGATTGAGCAACCGACAACCTCAGCAAATGAAAACATGCATAAGCAGCCTTTTGTTATTGGGGTTGCTGGTGGGGCGGCTTCTGGTAAGACTACGGTTTGTGACATGATTATACAGCAGCTTCATGATCAGCGTGTAGTTCTTGTTAACCAGGACTCGTTTTATCATAATCTGACCAGCGAGGAACTTAAACGGGTTCATGAATACAACTTTGACCATCCTGATGCTTTTGACACAGAGAAACTATTATCTTATATGGACAAGTTGAAGCATGGGCAAGCGGTAGATATTCCAAACTATGATTTCAAAAGTTACAAAAATAATGTGTTTCCAGCTAGAAGGGTAAACCCTTCGGATGTCATAATTTTGGAAGGCATTCTTGTTTTCCATGATCCTCGTGTCCGAGAGTTGATGAATATGAAGATATTTGTTGATACAGATGCTGATGTGCGGTTGGCTAGGAGGATAAGGCGTGATACAGTTGAGAAGGGAAGGGATATTGGTACAGTTCTTGATCAGTATTCACAATTTGTAAAGCCTGCTTTTGATGATTTTATTCTTCCTACAAAGAAGTATGCCGATATCATCATACCTCGTGGTGGAGATAATCACATAGCTGTTGATTTGATTGTACAACATATCCGCACTAAGCTTGGTCAGCATGACCTCTGTAAAATATATCCTAACTTATATGTCATTCATTCAACCTTTCAGATAAGGGGTATGCATACCCTCATACGTGATTCTCAAACAACAAAGCATGATTTTGTTTTCTATTCTGACCGATTAATTCGTTTGGTTGTTGAGCATGGCCTGGGACACCTACCTTTTACTGAAAAGCAGGTCATCACTCCAACTGGGTCTGTGTATATTGGTGTGGATTTTTGTAAGAGGTTATGCGGTGTATCTGTCATTAGGAGTGGTGAGAGTATGGAGAATGCTTTGCGAGCATGTTGTAAAGGTATCAAGATTGGCAAGATTCTTATTCATAGAGAAGGTGACAATGGTCAGCAGCTAATTTATGAAAAGCTACCCAATGACATTTCAGAGAGGCATGTATTGCTGTTGGATCCTATCTTGGGAACAGGGAATTCGGCTGTTCAAGCTATTTCTCTACTTCTAAAGAAGGGCGTACCAGAGTCCAACATCATATTTCTCAATCTCATATCTGCACCTCAAGGTGTGCATGTGGTCTGCAAACGCTTCCCCAGAATAAAGATTGTGACATCTGAGATTGAAACTGGTCTGAATGAAGACTTTCGTGTCGTACCTGGCATGGGTGAGTTTGGGGATAGATATTTTGGAACTGATGACGATGATCAAGAAGGGGTGCCTCCATCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

54.12

Weight (kDa)

6.47

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRK PF00485 51 - 237 8.2e-48 Phosphoribulokinase / Uridine kinase family
UPRTase PF14681 267 - 468 2.1e-73 Uracil phosphoribosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1358
Acc36I ACCTGC 1 cut(s) 928
AccB1I GGYRCC 1 cut(s) 1426
AciI CCGC 5 cut(s) 173, 377, 547, 739, 996
AclWI GGATC 3 cut(s) 482, 1160, 1173
AcsI RAATTY 2 cut(s) 16, 1186
AcuI CTGAAG 1 cut(s) 116
AfaI GTAC 4 cut(s) 601, 729, 1230, 1365
AfiI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
AgsI TTSAA 6 cut(s) 15, 364, 403, 801, 1199, 1334
AjnI CCWGG 3 cut(s) 246, 909, 1366
AluBI AGCT 7 cut(s) 217, 431, 713, 748, 1111, 1126, 1202
AluI AGCT 7 cut(s) 217, 431, 713, 748, 1111, 1126, 1202
AlwI GGATC 3 cut(s) 482, 1160, 1173
AlwNI CAGNNNCTG 1 cut(s) 539
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 39, 907
ApeKI GCWGC 4 cut(s) 85, 142, 214, 1108
ApoI RAATTY 2 cut(s) 16, 1186
AseI ATTAAT 1 cut(s) 884
Asp700I GAANNNNTTC 2 cut(s) 471, 1353
AsuHPI GGTGA 3 cut(s) 1031, 1106, 1388
AvaI CYCGRG 1 cut(s) 46
BamHI GGATCC 1 cut(s) 1165
BanI GGYRCC 1 cut(s) 1426
BauI CACGAG 2 cut(s) 492, 690
BbsI GAAGAC 1 cut(s) 1356
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 4 cut(s) 97, 154, 226, 1120
BccI CCATC 3 cut(s) 71, 321, 1441
BciT130I CCWGG 3 cut(s) 248, 911, 1368
BclI TGATCA 3 cut(s) 223, 610, 1414
BfaI CTAG 2 cut(s) 432, 555
BfuAI ACCTGC 1 cut(s) 928
BisI GCNGC 5 cut(s) 86, 143, 174, 215, 1109
BlsI GCNGC 5 cut(s) 87, 144, 175, 216, 1110
Bme1390I CCNGG 3 cut(s) 248, 911, 1368
BmeT110I CYCGRG 1 cut(s) 46
BmiI GGNNCC 2 cut(s) 1167, 1428
BmrFI CCNGG 3 cut(s) 248, 911, 1368
BmrI ACTGGG 1 cut(s) 963
BmsI GCATC 2 cut(s) 310, 526
BmuI ACTGGG 1 cut(s) 963
BoxI GACNNNNGTC 1 cut(s) 1101
BpiI GAAGAC 1 cut(s) 1356
BplI GAGNNNNNCTC 2 cut(s) 29, 61
Bpu10I CCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 1257
BsaAI YACGTR 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 45, 910
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
Bse1I ACTGG 2 cut(s) 958, 1342
BseBI CCWGG 3 cut(s) 248, 911, 1368
BseDI CCNNGG 2 cut(s) 45, 910
BseGI GGATG 3 cut(s) 82, 313, 457
BseLI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
BseMII CTCAG 2 cut(s) 132, 1317
BseNI ACTGG 2 cut(s) 958, 1342
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 4 cut(s) 97, 154, 226, 1120
BsgI GTGCAG 1 cut(s) 1251
BshFI GGCC 2 cut(s) 41, 909
BshNI GGYRCC 1 cut(s) 1426
BsiHKCI CYCGRG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 4 cut(s) 48, 695, 1175, 1373
BsmFI GGGAC 1 cut(s) 927
BsmI GAATGC 2 cut(s) 471, 1039
BsnI GGCC 2 cut(s) 41, 909
BsoBI CYCGRG 1 cut(s) 46
Bsp1407I TGTACA 1 cut(s) 727
Bsp143I GATC 5 cut(s) 223, 487, 610, 1165, 1414
BspACI CCGC 5 cut(s) 173, 377, 547, 739, 996
BspANI GGCC 2 cut(s) 41, 909
BspCNI CTCAG 2 cut(s) 131, 1318
BspHI TCATGA 2 cut(s) 220, 295
BspLI GGNNCC 2 cut(s) 1167, 1428
BspMI ACCTGC 1 cut(s) 928
BspPI GGATC 3 cut(s) 482, 1160, 1173
BspT107I GGYRCC 1 cut(s) 1426
BsrGI TGTACA 1 cut(s) 727
BsrI ACTGG 2 cut(s) 958, 1342
BssECI CCNNGG 2 cut(s) 45, 910
BssMI GATC 5 cut(s) 223, 487, 610, 1165, 1414
BssSI CACGAG 2 cut(s) 492, 690
Bst2BI CACGAG 2 cut(s) 492, 690
Bst2UI CCWGG 3 cut(s) 248, 911, 1368
Bst4CI ACNGT 3 cut(s) 193, 577, 604
BstAPI GCANNNNNTGC 1 cut(s) 1156
BstAUI TGTACA 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 836
BstC8I GCNNGC 3 cut(s) 375, 636, 1044
BstDEI CTNAG 3 cut(s) 118, 744, 1326
BstF5I GGATG 3 cut(s) 82, 313, 457
BstKTI GATC 5 cut(s) 226, 490, 613, 1168, 1417
BstMBI GATC 5 cut(s) 223, 487, 610, 1165, 1414
BstMWI GCNNNNNNNGC 6 cut(s) 142, 170, 754, 1043, 1156, 1199
BstNI CCWGG 3 cut(s) 248, 911, 1368
BstNSI RCATGY 4 cut(s) 136, 1050, 1154, 1286
BstPAI GACNNNNGTC 1 cut(s) 1101
BstSCI CCNGG 3 cut(s) 246, 909, 1366
BstV1I GCAGC 4 cut(s) 97, 154, 226, 1120
BstV2I GAAGAC 1 cut(s) 1356
BstX2I RGATCY 1 cut(s) 1165
BstYI RGATCY 1 cut(s) 1165
BsuRI GGCC 2 cut(s) 41, 909
BtsCI GGATG 3 cut(s) 82, 313, 457
BveI ACCTGC 1 cut(s) 928
Cac8I GCNNGC 3 cut(s) 375, 636, 1044
CaiI CAGNNNCTG 1 cut(s) 539
CciI TCATGA 2 cut(s) 220, 295
Csp6I GTAC 4 cut(s) 600, 728, 1229, 1364
CviQI GTAC 4 cut(s) 600, 728, 1229, 1364
DdeI CTNAG 3 cut(s) 118, 744, 1326
DpnI GATC 5 cut(s) 225, 489, 612, 1167, 1416
DpnII GATC 5 cut(s) 223, 487, 610, 1165, 1414
DrdI GACNNNNNNGTC 1 cut(s) 1358
DseDI GACNNNNNNGTC 1 cut(s) 1358
Eco147I AGGCCT 1 cut(s) 41
Eco32I GATATC 1 cut(s) 679
Eco57I CTGAAG 1 cut(s) 116
Eco88I CYCGRG 1 cut(s) 46
EcoRI GAATTC 1 cut(s) 1186
EcoRII CCWGG 3 cut(s) 246, 909, 1366
EcoRV GATATC 1 cut(s) 679
EcoT22I ATGCAT 2 cut(s) 138, 825
FalI AAGNNNNNCTT 2 cut(s) 459, 491
FaqI GGGAC 1 cut(s) 927
FbaI TGATCA 3 cut(s) 223, 610, 1414
Fnu4HI GCNGC 5 cut(s) 86, 143, 174, 215, 1109
FokI GGATG 3 cut(s) 89, 300, 464
Fsp4HI GCNGC 5 cut(s) 86, 143, 174, 215, 1109
FspBI CTAG 2 cut(s) 432, 555
GluI GCNGC 5 cut(s) 86, 143, 174, 215, 1109
HaeIII GGCC 2 cut(s) 41, 909
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 4 cut(s) 251, 839, 1075, 1235
HpaI GTTAAC 1 cut(s) 244
HphI GGTGA 3 cut(s) 1031, 1106, 1388
Hpy166II GTNNAC 2 cut(s) 244, 442
Hpy188I TCNGA 8 cut(s) 270, 451, 500, 810, 877, 1144, 1327, 1344
Hpy188III TCNNGA 7 cut(s) 63, 221, 296, 317, 608, 1063, 1418
Hpy8I GTNNAC 2 cut(s) 244, 442
HpyAV CCTTC 8 cut(s) 429, 456, 461, 577, 582, 1085, 1216, 1415
HpyCH4III ACNGT 3 cut(s) 193, 577, 604
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 6 cut(s) 85, 136, 823, 1268, 1282, 1293
HpyF10VI GCNNNNNNNGC 6 cut(s) 142, 170, 754, 1043, 1156, 1199
HpyF3I CTNAG 3 cut(s) 118, 744, 1326
HpySE526I ACGT 1 cut(s) 835
Ksp22I TGATCA 3 cut(s) 223, 610, 1414
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 5 cut(s) 223, 487, 610, 1165, 1414
Lsp1109I GCAGC 4 cut(s) 97, 154, 226, 1120
LweI GCATC 2 cut(s) 310, 526
MaeI CTAG 2 cut(s) 432, 555
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 4 cut(s) 197, 407, 1094, 1318
MalI GATC 5 cut(s) 225, 489, 612, 1167, 1416
MboI GATC 5 cut(s) 223, 487, 610, 1165, 1414
MboII GAAGA 4 cut(s) 109, 529, 647, 1361
MflI RGATCY 1 cut(s) 1165
MluCI AATT 6 cut(s) 16, 459, 623, 885, 1113, 1186
MlyI GAGTC 2 cut(s) 245, 1244
MmeI TCCRAC 3 cut(s) 974, 1143, 1263
Mph1103I ATGCAT 2 cut(s) 138, 825
MroXI GAANNNNTTC 2 cut(s) 471, 1353
MseI TTAA 3 cut(s) 243, 285, 884
MslI CAYNNNNRTG 2 cut(s) 75, 318
MspR9I CCNGG 3 cut(s) 248, 911, 1368
Mva1269I GAATGC 2 cut(s) 471, 1039
MvaI CCWGG 3 cut(s) 248, 911, 1368
MwoI GCNNNNNNNGC 6 cut(s) 142, 170, 754, 1043, 1156, 1199
NdeII GATC 5 cut(s) 223, 487, 610, 1165, 1414
NlaIV GGNNCC 2 cut(s) 1167, 1428
NmuCI GTSAC 3 cut(s) 197, 1094, 1318
NsiI ATGCAT 2 cut(s) 138, 825
NspI RCATGY 4 cut(s) 136, 1050, 1154, 1286
PagI TCATGA 2 cut(s) 220, 295
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 2 cut(s) 471, 1039
PdmI GAANNNNTTC 2 cut(s) 471, 1353
PfeI GAWTC 2 cut(s) 839, 1075
PkrI GCNGC 5 cut(s) 87, 144, 175, 216, 1110
PleI GAGTC 2 cut(s) 245, 1243
PpsI GAGTC 2 cut(s) 245, 1243
Ppu21I YACGTR 1 cut(s) 836
PshAI GACNNNNGTC 1 cut(s) 1101
PshBI ATTAAT 1 cut(s) 884
Psp6I CCWGG 3 cut(s) 246, 909, 1366
PspGI CCWGG 3 cut(s) 246, 909, 1366
PspN4I GGNNCC 2 cut(s) 1167, 1428
PstNI CAGNNNCTG 1 cut(s) 539
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 4 cut(s) 601, 729, 1230, 1365
RsaNI GTAC 4 cut(s) 600, 728, 1229, 1364
RseI CAYNNNNRTG 2 cut(s) 75, 318
SaqAI TTAA 3 cut(s) 243, 285, 884
SatI GCNGC 5 cut(s) 86, 143, 174, 215, 1109
Sau3AI GATC 5 cut(s) 223, 487, 610, 1165, 1414
SchI GAGTC 2 cut(s) 245, 1244
ScrFI CCNGG 3 cut(s) 248, 911, 1368
SfaNI GCATC 2 cut(s) 310, 526
SmiMI CAYNNNNRTG 2 cut(s) 75, 318
SmlI CTYRAG 1 cut(s) 1272
SmoI CTYRAG 1 cut(s) 1272
Sse9I AATT 6 cut(s) 16, 459, 623, 885, 1113, 1186
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 5 cut(s) 173, 377, 547, 739, 996
SspMI CTAG 2 cut(s) 432, 555
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 246, 909, 1366
TaaI ACNGT 3 cut(s) 193, 577, 604
TaiI ACGT 1 cut(s) 838
TaqII GACCGA 1 cut(s) 894
TasI AATT 6 cut(s) 16, 459, 623, 885, 1113, 1186
TatI WGTACW 1 cut(s) 727
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 2 cut(s) 839, 1075
Tru1I TTAA 3 cut(s) 243, 285, 884
Tru9I TTAA 3 cut(s) 243, 285, 884
TseFI GTSAC 3 cut(s) 197, 1094, 1318
TseI GCWGC 4 cut(s) 85, 142, 214, 1108
Tsp45I GTSAC 3 cut(s) 197, 1094, 1318
VspI ATTAAT 1 cut(s) 884
XapI RAATTY 2 cut(s) 16, 1186
XceI RCATGY 4 cut(s) 136, 1050, 1154, 1286
XmnI GAANNNNTTC 2 cut(s) 471, 1353
XspI CTAG 2 cut(s) 432, 555
Zsp2I ATGCAT 2 cut(s) 138, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.