MD09G1174600.v1.1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
14810392 .. 14813413
3022 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1174600.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGCAAATTCAAGCTTCCAAGTCTCTTGTGTCTTTGTTTTTTGTACATGCCTTGGCCTTCTCGTCACAGCACAAAGCCGCGGCCAATTTGTGTTTGAAAAACCTGTACCCGTTTTCTTCTTTGGGGATTCATTTTTTGATGCTGGAAATAATAACTACGTCAACACTACTTTTCGGGCAAATTACTGGCCATATGGTGAAACCTTCTTCAAGAACCCAACCGGAAGATTTTCTGATGGTCGACTAATTTCAGATTTTATTGCTGAGTATGCAGAGTTGCCATTTATTCCACCGTATCTACAACCTGGTAATGATCAATTTACATATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTTTGGTCGAAACAAGCCAAGGTTTGGTGATAGATCTTCATTCTCAACTTTCATATTTCAAGAGCGTTAGGAAGTCGTTGAACCGGACACTAGGGGATGAACAAACCAAGACCCTGCTATCAAGAGCTGTTTACTTGTTTAGCGTCGGAGGCAACGATTACACTTTCCCTTTCGAGAAAAACTCCAGTGTGCTCGGACCCCAACCTCACGAGGAATTTGTTGGCCTTGTGATAGGAAATATCACTGCAGTGATCAAAGAAATATATAGAGAAGGAGGAAGGAATTTTGGGTTTCTTGGTCTTGATCCTCTTGCTTGTTTACCATATTCAAGAGCAGTTGTTGAGGGACAAAATGGTGGTGGCTGCTTTGACAAAATCACACCATACGTAAAACTACACAACAAATTACTTCCCAAACTCCTACAGAAGCTAGAGAGAGAATTCAAGGGATTCAGATTCTCACTTTCCCAAATCTATGAGTTTCTGACAGAAAGAATAAGTCACCCCTCTAAATATGGTTTTGAGGAAGGGAAAGTGGCATGCTGTGGAAGTGGTCCGTATCGAGGAATTTATAGCTGTGGAGGCAAGAGAGGAACCAAAGAGTATGACCTGTGTAAGAACGTCAGTGAATATGTCTACTTTGATTCTGGTCATCCAACTGAAAGGGTCTTTCAACAGATTGCCGACCAATTCTGGAATGGAACTCCCAACTCTACCGTGTCTTACAATTTGAAAACACTATTTGAAACTAAGTATTAA

Protein Analysis

372

Amino Acids

41.61

Weight (kDa)

7.5

Isoelectric Point (pI)

30.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 38 - 349 5.9e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 382
AccI GTMKAC 2 cut(s) 241, 993
AccII CGCG 1 cut(s) 81
AciI CCGC 2 cut(s) 79, 81
AclWI GGATC 1 cut(s) 656
AcoI YGGCCR 2 cut(s) 82, 188
AcsI RAATTY 5 cut(s) 7, 572, 640, 797, 924
AfaI GTAC 2 cut(s) 46, 108
AfiI CCNNNNNNNGG 2 cut(s) 382, 920
AjnI CCWGG 1 cut(s) 304
AleI CACNNNNGTG 1 cut(s) 605
AluBI AGCT 5 cut(s) 15, 353, 485, 787, 933
AluI AGCT 5 cut(s) 15, 353, 485, 787, 933
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 1 cut(s) 28
AlwI GGATC 1 cut(s) 656
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 4 cut(s) 55, 82, 188, 580
ApeKI GCWGC 1 cut(s) 720
ApoI RAATTY 5 cut(s) 7, 572, 640, 797, 924
Asp700I GAANNNNTTC 1 cut(s) 229
AspS9I GGNCC 2 cut(s) 554, 911
AsuHPI GGTGA 3 cut(s) 209, 397, 851
AvaII GGWCC 2 cut(s) 554, 911
BalI TGGCCA 1 cut(s) 190
BauI CACGAG 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 1 cut(s) 707
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 306
BclI TGATCA 2 cut(s) 313, 609
BcoDI GTCTC 1 cut(s) 28
BfaI CTAG 2 cut(s) 449, 788
BfmI CTRYAG 3 cut(s) 345, 603, 779
BglII AGATCT 1 cut(s) 391
BisI GCNGC 3 cut(s) 79, 82, 721
BlsI GCNGC 3 cut(s) 80, 83, 722
Bme1390I CCNGG 1 cut(s) 306
Bme18I GGWCC 2 cut(s) 554, 911
BmgT120I GGNCC 2 cut(s) 554, 911
BmiI GGNNCC 2 cut(s) 556, 952
BmrFI CCNGG 1 cut(s) 306
BmsI GCATC 2 cut(s) 130, 350
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 1 cut(s) 526
BsaAI YACGTR 1 cut(s) 745
BsaJI CCNNGG 3 cut(s) 52, 79, 376
BsaWI WCCGGW 2 cut(s) 221, 441
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 920
Bse1I ACTGG 2 cut(s) 191, 543
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 3 cut(s) 52, 79, 376
BseGI GGATG 2 cut(s) 460, 1009
BseLI CCNNNNNNNGG 2 cut(s) 382, 920
BseMII CTCAG 1 cut(s) 255
BseNI ACTGG 2 cut(s) 191, 543
BseXI GCAGC 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 81
BshFI GGCC 4 cut(s) 57, 84, 190, 582
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 2 cut(s) 222, 442
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 2 cut(s) 382, 920
BsmAI GTCTC 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 4 cut(s) 57, 84, 190, 582
Bsp1286I GDGCHC 1 cut(s) 552
Bsp1407I TGTACA 1 cut(s) 44
Bsp143I GATC 4 cut(s) 313, 391, 609, 661
BspACI CCGC 2 cut(s) 79, 81
BspANI GGCC 4 cut(s) 57, 84, 190, 582
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 556, 952
BspMAI CTGCAG 2 cut(s) 349, 607
BspPI GGATC 1 cut(s) 656
BsrGI TGTACA 1 cut(s) 44
BsrI ACTGG 2 cut(s) 191, 543
BssECI CCNNGG 3 cut(s) 52, 79, 376
BssMI GATC 4 cut(s) 313, 391, 609, 661
BssSI CACGAG 1 cut(s) 566
BssT1I CCWWGG 2 cut(s) 52, 376
Bst2BI CACGAG 1 cut(s) 566
Bst2UI CCWGG 1 cut(s) 306
Bst4CI ACNGT 2 cut(s) 294, 1075
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 745
BstC8I GCNNGC 1 cut(s) 898
BstDEI CTNAG 2 cut(s) 264, 1107
BstDSI CCRYGG 1 cut(s) 79
BstF5I GGATG 2 cut(s) 460, 1009
BstFNI CGCG 1 cut(s) 81
BstKTI GATC 4 cut(s) 316, 394, 612, 664
BstMAI GTCTC 1 cut(s) 28
BstMBI GATC 4 cut(s) 313, 391, 609, 661
BstMWI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 939
BstNI CCWGG 1 cut(s) 306
BstNSI RCATGY 2 cut(s) 51, 900
BstSCI CCNGG 1 cut(s) 304
BstSFI CTRYAG 3 cut(s) 345, 603, 779
BstSNI TACGTA 1 cut(s) 745
BstUI CGCG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 391
BstYI RGATCY 1 cut(s) 391
BsuRI GGCC 4 cut(s) 57, 84, 190, 582
BtgI CCRYGG 1 cut(s) 79
BtsCI GGATG 2 cut(s) 460, 1009
BtsI GCAGTG 2 cut(s) 600, 612
BtsIMutI CAGTG 4 cut(s) 550, 600, 612, 988
Cac8I GCNNGC 1 cut(s) 898
CaiI CAGNNNCTG 1 cut(s) 353
Cfr13I GGNCC 2 cut(s) 554, 911
Cfr42I CCGCGG 1 cut(s) 82
CseI GACGC 1 cut(s) 490
CsiI ACCWGGT 1 cut(s) 304
Csp6I GTAC 2 cut(s) 45, 107
CviAII CATG 2 cut(s) 48, 897
CviQI GTAC 2 cut(s) 45, 107
DdeI CTNAG 2 cut(s) 264, 1107
DpnI GATC 4 cut(s) 315, 393, 611, 663
DpnII GATC 4 cut(s) 313, 391, 609, 661
EaeI YGGCCR 2 cut(s) 82, 188
Eco105I TACGTA 1 cut(s) 745
Eco130I CCWWGG 2 cut(s) 52, 376
Eco47I GGWCC 2 cut(s) 554, 911
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 52, 376
ErhI CCWWGG 2 cut(s) 52, 376
FaeI CATG 2 cut(s) 51, 900
FaqI GGGAC 1 cut(s) 717
FatI CATG 2 cut(s) 47, 896
FauNDI CATATG 2 cut(s) 193, 325
FbaI TGATCA 2 cut(s) 313, 609
FblI GTMKAC 2 cut(s) 241, 993
Fnu4HI GCNGC 3 cut(s) 79, 82, 721
FokI GGATG 2 cut(s) 467, 996
Fsp4HI GCNGC 3 cut(s) 79, 82, 721
FspBI CTAG 2 cut(s) 449, 788
GluI GCNGC 3 cut(s) 79, 82, 721
GsuI CTGGAG 1 cut(s) 526
HaeIII GGCC 4 cut(s) 57, 84, 190, 582
HapII CCGG 2 cut(s) 222, 442
HgaI GACGC 1 cut(s) 490
Hin1II CATG 2 cut(s) 51, 900
HincII GTYRAC 2 cut(s) 163, 242
HindII GTYRAC 2 cut(s) 163, 242
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 4 cut(s) 128, 807, 813, 1001
HpaII CCGG 2 cut(s) 222, 442
HphI GGTGA 3 cut(s) 209, 397, 851
Hpy166II GTNNAC 5 cut(s) 163, 242, 490, 677, 994
Hpy188I TCNGA 6 cut(s) 235, 253, 506, 554, 812, 843
Hpy188III TCNNGA 8 cut(s) 211, 418, 480, 532, 566, 659, 687, 1051
Hpy8I GTNNAC 5 cut(s) 163, 242, 490, 677, 994
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 5 cut(s) 68, 214, 623, 630, 878
HpyCH4III ACNGT 2 cut(s) 294, 1075
HpyCH4IV ACGT 3 cut(s) 159, 744, 978
HpyCH4V TGCA 5 cut(s) 272, 332, 341, 347, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 939
HpyF3I CTNAG 2 cut(s) 264, 1107
HpySE526I ACGT 3 cut(s) 159, 744, 978
Hsp92II CATG 2 cut(s) 51, 900
Ksp22I TGATCA 2 cut(s) 313, 609
KspI CCGCGG 1 cut(s) 82
Kzo9I GATC 4 cut(s) 313, 391, 609, 661
LmnI GCTCC 1 cut(s) 350
Lsp1109I GCAGC 1 cut(s) 707
LweI GCATC 2 cut(s) 130, 350
MabI ACCWGGT 1 cut(s) 304
MaeI CTAG 2 cut(s) 449, 788
MaeII ACGT 3 cut(s) 159, 744, 978
MaeIII GTNAC 2 cut(s) 64, 857
MalI GATC 4 cut(s) 315, 393, 611, 663
MboI GATC 4 cut(s) 313, 391, 609, 661
MboII GAAGA 4 cut(s) 109, 199, 237, 386
MflI RGATCY 1 cut(s) 391
MhlI GDGCHC 1 cut(s) 552
MlsI TGGCCA 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 190
MmeI TCCRAC 2 cut(s) 484, 1037
Mox20I TGGCCA 1 cut(s) 190
MroXI GAANNNNTTC 1 cut(s) 229
MscI TGGCCA 1 cut(s) 190
MseI TTAA 1 cut(s) 1114
MslI CAYNNNNRTG 1 cut(s) 605
Msp20I TGGCCA 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 2 cut(s) 222, 442
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
MvnI CGCG 1 cut(s) 81
MwoI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 939
NdeI CATATG 2 cut(s) 193, 325
NdeII GATC 4 cut(s) 313, 391, 609, 661
NlaIII CATG 2 cut(s) 51, 900
NlaIV GGNNCC 2 cut(s) 556, 952
NmuCI GTSAC 2 cut(s) 64, 857
NspI RCATGY 2 cut(s) 51, 900
OliI CACNNNNGTG 1 cut(s) 605
PaeI GCATGC 1 cut(s) 900
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PdmI GAANNNNTTC 1 cut(s) 229
PfeI GAWTC 4 cut(s) 128, 807, 813, 1001
PflMI CCANNNNNTGG 1 cut(s) 382
PkrI GCNGC 3 cut(s) 80, 83, 722
Ppu21I YACGTR 1 cut(s) 745
Psp6I CCWGG 1 cut(s) 304
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 556, 952
PspPI GGNCC 2 cut(s) 554, 911
PstI CTGCAG 2 cut(s) 349, 607
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 391
RsaI GTAC 2 cut(s) 46, 108
RsaNI GTAC 2 cut(s) 45, 107
RseI CAYNNNNRTG 1 cut(s) 605
SacII CCGCGG 1 cut(s) 82
SalI GTCGAC 1 cut(s) 240
SaqAI TTAA 1 cut(s) 1114
SatI GCNGC 3 cut(s) 79, 82, 721
Sau3AI GATC 4 cut(s) 313, 391, 609, 661
Sau96I GGNCC 2 cut(s) 554, 911
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 1 cut(s) 552
SexAI ACCWGGT 1 cut(s) 304
SfaNI GCATC 2 cut(s) 130, 350
SfcI CTRYAG 3 cut(s) 345, 603, 779
Sfr303I CCGCGG 1 cut(s) 82
SgrBI CCGCGG 1 cut(s) 82
SinI GGWCC 2 cut(s) 554, 911
SmiMI CAYNNNNRTG 1 cut(s) 605
SnaBI TACGTA 1 cut(s) 745
SphI GCATGC 1 cut(s) 900
SsiI CCGC 2 cut(s) 79, 81
SspMI CTAG 2 cut(s) 449, 788
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 2 cut(s) 52, 376
TaaI ACNGT 2 cut(s) 294, 1075
TaiI ACGT 3 cut(s) 162, 747, 981
TaqI TCGA 4 cut(s) 241, 366, 531, 919
TatI WGTACW 1 cut(s) 44
TauI GCSGC 2 cut(s) 81, 84
TfiI GAWTC 4 cut(s) 128, 807, 813, 1001
Tru1I TTAA 1 cut(s) 1114
Tru9I TTAA 1 cut(s) 1114
TscAI CASTG 4 cut(s) 550, 607, 612, 988
TseFI GTSAC 2 cut(s) 64, 857
TseI GCWGC 1 cut(s) 720
Tsp45I GTSAC 2 cut(s) 64, 857
TspDTI ATGAA 4 cut(s) 120, 386, 399, 471
TspGWI ACGGA 1 cut(s) 903
TspRI CASTG 4 cut(s) 550, 607, 612, 988
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 2 cut(s) 554, 911
XapI RAATTY 5 cut(s) 7, 572, 640, 797, 924
XceI RCATGY 2 cut(s) 51, 900
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XmiI GTMKAC 2 cut(s) 241, 993
XmnI GAANNNNTTC 1 cut(s) 229
XspI CTAG 2 cut(s) 449, 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.