Prupe.3G032700_v2.0.a1

Belongs to the 'GDSL' lipolytic enzyme family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
2417580 .. 2419799
2220 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G032700.1

Sequence Viewer

Length: 1119 bp
ATGGCAAATATAAGCTTCCAAGTCTCTGTCTTCGCATTTTGTACAAGCATTAGCCTTCTTCTCATGGCAACCCAAAGCCAAGGCCATCTTGGGTTTGACAAACATGTACCCCTTTTCTTCTTTGGTGATTCATACTTTGATGCTGGGAATAACAACTATATCAACACTACTCTGCGGGCAAATTATTGGCCATATGGTGAAACTTTCTTCAAATACCCGACCGGTCGATTTTCGGACGGTCGTCTAATTTCAGATTTTATTGCTGAGTATGCAGAGTTGCCGTTTATTCCACCGTATCTACAACCCGGCAGTCATCAGTTTATATATGGAGCAAACTTTGCATCTGCAGGAGCTGGTGCTCTGGTTGAAACTAGCCAAGGTTTGGTGATAGACCTTCATTCTCAACTCTCATATTTCCAAAGGGTCAAGAGGTTGCTGAGGCAGAAACTAGGGGATGAAGAAGCCAAGGCTCTGCTCTCAAGAGCCGTTTACTTGTTTAGCGTCGGAGGCAACGATTATATTTTCCCATTCGAGACAAACTCCAGTGTGCTTCGATCCTACTCTCATGAGGAATTTGTAGGCCTGGTGATAGCCAACATCACTGCAGTAATCAAAGAAATATATAGGGAAGGAGGAAGGAATTTTGGGTTTCTTGGCCTTGATCCTCTTGGTTGTTTACCATATTCAAGAGCAATTGTATATGTACGGGGAGAAAGTGGTGCCTGCTTTGAAGGAATTACACCATACGTAAAACTACACAACAAAGCAATTTCCAAACTCCTGCAGAAGCTAGAGATTGAGCTCAAGGGATTCAGATACTCACTTTCCCAAATTTACGAGTTTTTAATAGAAAGAATAAATCATCCCTCTAAATATGGTTTTGAGGAAGGGAAAGTGGCATGCTGTGGAAGTGGTCCATATGGAGGCATTTATAGCTGTGGAGGGAAGAGAGAGGTGAAAGAGTATGACCTGTGTCATAATGCTAGTGAATATGTCTTCTTTGACTCTGGTCATCCAACTGAAAGGGTCTTTCAGCAGTTTGCCAAGCAATTCTGGAGGGGAACTTCCAATTCCACTACGTCTTACAATCTGAAAGCACTATTTGAAACTCAATATTAA

Protein Analysis

373

Amino Acids

41.93

Weight (kDa)

6.76

Isoelectric Point (pI)

38.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 719
AccB7I CCANNNNNTGG 1 cut(s) 382
AciI CCGC 1 cut(s) 175
AclWI GGATC 2 cut(s) 549, 656
AcoI YGGCCR 1 cut(s) 188
AcsI RAATTY 3 cut(s) 572, 640, 831
AfaI GTAC 3 cut(s) 43, 108, 705
AfiI CCNNNNNNNGG 2 cut(s) 382, 923
AflIII ACRYGT 1 cut(s) 103
AgeI ACCGGT 1 cut(s) 221
AgsI TTSAA 5 cut(s) 211, 368, 687, 731, 1106
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 5 cut(s) 15, 353, 790, 802, 936
AluI AGCT 5 cut(s) 15, 353, 790, 802, 936
Alw21I GWGCWC 2 cut(s) 361, 804
Alw26I GTCTC 2 cut(s) 28, 527
AlwI GGATC 2 cut(s) 549, 656
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 4 cut(s) 82, 188, 580, 655
ApoI RAATTY 3 cut(s) 572, 640, 831
AsiGI ACCGGT 1 cut(s) 221
AspS9I GGNCC 1 cut(s) 914
AsuC2I CCSGG 1 cut(s) 306
AsuHPI GGTGA 5 cut(s) 137, 209, 397, 598, 967
AvaII GGWCC 1 cut(s) 914
BalI TGGCCA 1 cut(s) 190
BanI GGYRCC 1 cut(s) 719
BanII GRGCYC 1 cut(s) 804
BbsI GAAGAC 2 cut(s) 22, 988
Bbv12I GWGCWC 2 cut(s) 361, 804
BbvCI CCTCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 93
BceAI ACGGC 2 cut(s) 265, 470
BciT130I CCWGG 1 cut(s) 584
BcnI CCSGG 1 cut(s) 306
BcoDI GTCTC 2 cut(s) 28, 527
BfaI CTAG 4 cut(s) 372, 449, 791, 984
BfmI CTRYAG 3 cut(s) 345, 603, 782
Bme1390I CCNGG 2 cut(s) 306, 584
Bme18I GGWCC 1 cut(s) 914
BmgT120I GGNCC 1 cut(s) 914
BmiI GGNNCC 1 cut(s) 721
BmrFI CCNGG 2 cut(s) 306, 584
BmsI GCATC 2 cut(s) 130, 350
BoxI GACNNNNGTC 3 cut(s) 240, 972, 1008
BpiI GAAGAC 2 cut(s) 22, 988
BplI GAGNNNNNCTC 2 cut(s) 524, 556
BpmI CTGGAG 2 cut(s) 526, 1075
Bpu10I CCTNAGC 1 cut(s) 437
BpuEI CTTGAG 2 cut(s) 463, 788
BpuMI CCSGG 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 748
BsaJI CCNNGG 3 cut(s) 79, 376, 465
BsaWI WCCGGW 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 923
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 543
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 3 cut(s) 79, 376, 465
BseGI GGATG 3 cut(s) 460, 862, 1012
BseLI CCNNNNNNNGG 2 cut(s) 382, 923
BseMII CTCAG 2 cut(s) 255, 428
BseNI ACTGG 1 cut(s) 543
BseYI CCCAGC 1 cut(s) 143
Bsh1285I CGRYCG 3 cut(s) 222, 226, 241
BshFI GGCC 4 cut(s) 84, 190, 582, 657
BshNI GGYRCC 1 cut(s) 719
BshTI ACCGGT 1 cut(s) 221
BsiEI CGRYCG 3 cut(s) 222, 226, 241
BsiHKAI GWGCWC 2 cut(s) 361, 804
BsiSI CCGG 2 cut(s) 222, 306
BslI CCNNNNNNNGG 2 cut(s) 382, 923
BsmAI GTCTC 2 cut(s) 28, 527
BsnI GGCC 4 cut(s) 84, 190, 582, 657
Bsp1286I GDGCHC 2 cut(s) 361, 804
Bsp1407I TGTACA 1 cut(s) 41
Bsp143I GATC 2 cut(s) 554, 661
BspACI CCGC 1 cut(s) 175
BspANI GGCC 4 cut(s) 84, 190, 582, 657
BspCNI CTCAG 2 cut(s) 256, 429
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 1 cut(s) 721
BspMAI CTGCAG 3 cut(s) 349, 607, 786
BspPI GGATC 2 cut(s) 549, 656
BspT107I GGYRCC 1 cut(s) 719
BsrFI RCCGGY 1 cut(s) 221
BsrGI TGTACA 1 cut(s) 41
BsrI ACTGG 1 cut(s) 543
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 3 cut(s) 79, 376, 465
BssMI GATC 2 cut(s) 554, 661
BssT1I CCWWGG 3 cut(s) 79, 376, 465
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 2 cut(s) 239, 294
Bst6I CTCTTC 1 cut(s) 941
BstAPI GCANNNNNTGC 1 cut(s) 338
BstAUI TGTACA 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 748
BstC8I GCNNGC 3 cut(s) 177, 724, 901
BstDEI CTNAG 2 cut(s) 264, 437
BstF5I GGATG 3 cut(s) 460, 862, 1012
BstKTI GATC 2 cut(s) 557, 664
BstMAI GTCTC 2 cut(s) 28, 527
BstMBI GATC 2 cut(s) 554, 661
BstMCI CGRYCG 3 cut(s) 222, 226, 241
BstMWI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 933
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 2 cut(s) 107, 903
BstPAI GACNNNNGTC 3 cut(s) 240, 972, 1008
BstSCI CCNGG 2 cut(s) 304, 582
BstSFI CTRYAG 3 cut(s) 345, 603, 782
BstSNI TACGTA 1 cut(s) 748
BstV2I GAAGAC 2 cut(s) 22, 988
BsuRI GGCC 4 cut(s) 84, 190, 582, 657
BtsCI GGATG 3 cut(s) 460, 862, 1012
BtsI GCAGTG 1 cut(s) 600
BtsIMutI CAGTG 2 cut(s) 550, 600
Cac8I GCNNGC 3 cut(s) 177, 724, 901
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 914
CseI GACGC 1 cut(s) 490
Csp6I GTAC 3 cut(s) 42, 107, 704
CspAI ACCGGT 1 cut(s) 221
CviAII CATG 4 cut(s) 64, 104, 566, 900
CviQI GTAC 3 cut(s) 42, 107, 704
DdeI CTNAG 2 cut(s) 264, 437
DpnI GATC 2 cut(s) 556, 663
DpnII GATC 2 cut(s) 554, 661
EaeI YGGCCR 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 941
EarI CTCTTC 1 cut(s) 941
Ecl136II GAGCTC 1 cut(s) 802
Eco105I TACGTA 1 cut(s) 748
Eco130I CCWWGG 3 cut(s) 79, 376, 465
Eco147I AGGCCT 1 cut(s) 582
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 1 cut(s) 914
Eco53kI GAGCTC 1 cut(s) 802
EcoICRI GAGCTC 1 cut(s) 802
EcoRII CCWGG 1 cut(s) 582
EcoT14I CCWWGG 3 cut(s) 79, 376, 465
EcoT38I GRGCYC 1 cut(s) 804
ErhI CCWWGG 3 cut(s) 79, 376, 465
FaeI CATG 4 cut(s) 67, 107, 569, 903
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FatI CATG 4 cut(s) 63, 103, 565, 899
FauI CCCGC 1 cut(s) 168
FauNDI CATATG 2 cut(s) 193, 919
FokI GGATG 3 cut(s) 467, 849, 999
FriOI GRGCYC 1 cut(s) 804
FspBI CTAG 4 cut(s) 372, 449, 791, 984
GsaI CCCAGC 1 cut(s) 147
GsuI CTGGAG 2 cut(s) 526, 1075
HaeIII GGCC 4 cut(s) 84, 190, 582, 657
HapII CCGG 2 cut(s) 222, 306
HgaI GACGC 1 cut(s) 490
Hin1II CATG 4 cut(s) 67, 107, 569, 903
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 3 cut(s) 128, 810, 1004
HpaII CCGG 2 cut(s) 222, 306
HphI GGTGA 5 cut(s) 137, 209, 397, 598, 967
Hpy166II GTNNAC 2 cut(s) 490, 677
Hpy188I TCNGA 5 cut(s) 235, 253, 506, 815, 1092
Hpy188III TCNNGA 6 cut(s) 427, 480, 532, 566, 687, 1054
Hpy8I GTNNAC 2 cut(s) 490, 677
Hpy99I CGWCG 1 cut(s) 506
HpyAV CCTTC 6 cut(s) 65, 404, 623, 630, 725, 881
HpyCH4III ACNGT 2 cut(s) 239, 294
HpyCH4IV ACGT 2 cut(s) 747, 1079
HpyCH4V TGCA 5 cut(s) 272, 341, 347, 605, 784
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 933
HpyF3I CTNAG 2 cut(s) 264, 437
HpySE526I ACGT 2 cut(s) 747, 1079
Hsp92II CATG 4 cut(s) 67, 107, 569, 903
Kzo9I GATC 2 cut(s) 554, 661
LmnI GCTCC 2 cut(s) 329, 350
LweI GCATC 2 cut(s) 130, 350
MaeI CTAG 4 cut(s) 372, 449, 791, 984
MaeII ACGT 2 cut(s) 747, 1079
MalI GATC 2 cut(s) 556, 663
MboI GATC 2 cut(s) 554, 661
MboII GAAGA 7 cut(s) 22, 50, 109, 199, 470, 958, 988
MfeI CAATTG 1 cut(s) 693
MhlI GDGCHC 2 cut(s) 361, 804
MlsI TGGCCA 1 cut(s) 190
MluNI TGGCCA 1 cut(s) 190
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 2 cut(s) 484, 1040
Mox20I TGGCCA 1 cut(s) 190
MscI TGGCCA 1 cut(s) 190
MseI TTAA 2 cut(s) 845, 1117
Msp20I TGGCCA 1 cut(s) 190
MspI CCGG 2 cut(s) 222, 306
MspR9I CCNGG 2 cut(s) 306, 584
MunI CAATTG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 584
MwoI GCNNNNNNNGC 4 cut(s) 269, 338, 507, 933
NciI CCSGG 1 cut(s) 306
NdeI CATATG 2 cut(s) 193, 919
NdeII GATC 2 cut(s) 554, 661
NlaIII CATG 4 cut(s) 67, 107, 569, 903
NlaIV GGNNCC 1 cut(s) 721
NspI RCATGY 2 cut(s) 107, 903
PaeI GCATGC 1 cut(s) 903
PagI TCATGA 1 cut(s) 565
PceI AGGCCT 1 cut(s) 582
PciI ACATGT 1 cut(s) 103
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PfeI GAWTC 2 cut(s) 128, 810
PflMI CCANNNNNTGG 1 cut(s) 382
PinAI ACCGGT 1 cut(s) 221
PleI GAGTC 1 cut(s) 998
PpsI GAGTC 1 cut(s) 998
Ppu21I YACGTR 1 cut(s) 748
PscI ACATGT 1 cut(s) 103
PshAI GACNNNNGTC 3 cut(s) 240, 972, 1008
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 1 cut(s) 582
PspFI CCCAGC 1 cut(s) 143
PspGI CCWGG 1 cut(s) 582
PspN4I GGNNCC 1 cut(s) 721
PspPI GGNCC 1 cut(s) 914
PstI CTGCAG 3 cut(s) 349, 607, 786
PstNI CAGNNNCTG 1 cut(s) 353
RsaI GTAC 3 cut(s) 43, 108, 705
RsaNI GTAC 3 cut(s) 42, 107, 704
SacI GAGCTC 1 cut(s) 804
SaqAI TTAA 2 cut(s) 845, 1117
Sau3AI GATC 2 cut(s) 554, 661
Sau96I GGNCC 1 cut(s) 914
SchI GAGTC 1 cut(s) 998
ScrFI CCNGG 2 cut(s) 306, 584
SduI GDGCHC 2 cut(s) 361, 804
SfaNI GCATC 2 cut(s) 130, 350
SfcI CTRYAG 3 cut(s) 345, 603, 782
SinI GGWCC 1 cut(s) 914
SmlI CTYRAG 2 cut(s) 478, 803
SmoI CTYRAG 2 cut(s) 478, 803
SnaBI TACGTA 1 cut(s) 748
SphI GCATGC 1 cut(s) 903
SseBI AGGCCT 1 cut(s) 582
SsiI CCGC 1 cut(s) 175
SspI AATATT 1 cut(s) 1115
SspMI CTAG 4 cut(s) 372, 449, 791, 984
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 582
StyD4I CCNGG 2 cut(s) 304, 582
StyI CCWWGG 3 cut(s) 79, 376, 465
TaaI ACNGT 2 cut(s) 239, 294
TaiI ACGT 2 cut(s) 750, 1082
TaqI TCGA 3 cut(s) 226, 531, 553
TatI WGTACW 1 cut(s) 41
TfiI GAWTC 2 cut(s) 128, 810
Tru1I TTAA 2 cut(s) 845, 1117
Tru9I TTAA 2 cut(s) 845, 1117
TscAI CASTG 2 cut(s) 550, 607
TspDTI ATGAA 3 cut(s) 120, 386, 471
TspRI CASTG 2 cut(s) 550, 607
Van91I CCANNNNNTGG 1 cut(s) 382
VpaK11BI GGWCC 1 cut(s) 914
XapI RAATTY 3 cut(s) 572, 640, 831
XceI RCATGY 2 cut(s) 107, 903
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XspI CTAG 4 cut(s) 372, 449, 791, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.