RchiOBHm_Chr2g0147161

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000193
Physical Location & Seq
Reverse (-)
64816703 .. 64817696
994 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51681

Sequence Viewer

Length: 474 bp
ATGGGTCTAATCCCGGATTTTATAGGCTTAAACACTCAATTGAGTTATTTCAAGAATGTGGAGAAGCAATTGAGGCACAAACTAGGTGATGGAGAAGCCTACACATTTCTTTCTAAAGCTGTTTACCTAATTAGCATTGGAACCAATGATTATTATACCCCTCTTATGAAAAATTACAGCTCGACTCAAGATGATGAATATGTTGGCATGGTGATTGGCAACCTCACAGATGTGATCAGAGAAATATATAAGGTAGGTGGAAGGAAATTCGGGTTTGCAAACGTGTTACCTCTGGGTTGTTTACCAAGCTTTAGAATAAAGAATCCAGAAAACAGTGGAGCCTGTATGAAAGAAGCTATGTCACTGGTGAGATCTCACAATAAAGAACTTGCTAAAGTGCTCCTAAAGTTGAAGAGCCAGCTCCAAGGATTCAAATATTCCAATGCCGATTTCTACACGTACATTCGTAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

157

Amino Acids

17.8

Weight (kDa)

9.24

Isoelectric Point (pI)

31.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 35 - 153 4.3e-11 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 266
AfaI GTAC 1 cut(s) 461
AflIII ACRYGT 2 cut(s) 282, 456
AgsI TTSAA 3 cut(s) 52, 412, 433
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 5 cut(s) 119, 180, 309, 356, 421
AluI AGCT 5 cut(s) 119, 180, 309, 356, 421
Alw21I GWGCWC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 14
AsuHPI GGTGA 3 cut(s) 98, 223, 379
Bbv12I GWGCWC 1 cut(s) 402
BccI CCATC 1 cut(s) 83
BclI TGATCA 1 cut(s) 234
BcnI CCSGG 1 cut(s) 14
BfaI CTAG 1 cut(s) 83
BglII AGATCT 1 cut(s) 371
Bme1390I CCNGG 1 cut(s) 14
BmiI GGNNCC 2 cut(s) 142, 340
BmrFI CCNGG 1 cut(s) 14
BpuEI CTTGAG 1 cut(s) 171
BpuMI CCSGG 1 cut(s) 14
BsaAI YACGTR 1 cut(s) 459
BsaJI CCNNGG 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 369
BseDI CCNNGG 1 cut(s) 424
BseNI ACTGG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 402
BsiSI CCGG 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 402
Bsp143I GATC 2 cut(s) 234, 371
BspLI GGNNCC 2 cut(s) 142, 340
BspQI GCTCTTC 1 cut(s) 407
BsrI ACTGG 1 cut(s) 369
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 2 cut(s) 234, 371
BssT1I CCWWGG 1 cut(s) 424
Bst4CI ACNGT 1 cut(s) 335
Bst6I CTCTTC 1 cut(s) 407
BstBAI YACGTR 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 419
BstKTI GATC 2 cut(s) 237, 374
BstMBI GATC 2 cut(s) 234, 371
BstMWI GCNNNNNNNGC 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 12
BstX2I RGATCY 1 cut(s) 371
BstYI RGATCY 1 cut(s) 371
BtsIMutI CAGTG 2 cut(s) 340, 362
Cac8I GCNNGC 1 cut(s) 419
Csp6I GTAC 1 cut(s) 460
CviAII CATG 1 cut(s) 208
CviJI RGCY 9 cut(s) 27, 98, 119, 180, 309, 341, 356, 417, 421
CviKI_1 RGCY 9 cut(s) 27, 98, 119, 180, 309, 341, 356, 417, 421
CviQI GTAC 1 cut(s) 460
DpnI GATC 2 cut(s) 236, 373
DpnII GATC 2 cut(s) 234, 371
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
Eco130I CCWWGG 1 cut(s) 424
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 211
FaiI YATR 9 cut(s) 23, 156, 167, 201, 209, 247, 249, 347, 359
FatI CATG 1 cut(s) 207
FbaI TGATCA 1 cut(s) 234
FspBI CTAG 1 cut(s) 83
HapII CCGG 1 cut(s) 14
Hin1II CATG 1 cut(s) 211
HindIII AAGCTT 1 cut(s) 307
HinfI GANTC 3 cut(s) 184, 322, 429
HpaII CCGG 1 cut(s) 14
HphI GGTGA 3 cut(s) 98, 223, 379
Hpy166II GTNNAC 2 cut(s) 124, 302
Hpy188I TCNGA 1 cut(s) 239
Hpy188III TCNNGA 3 cut(s) 52, 188, 326
Hpy8I GTNNAC 2 cut(s) 124, 302
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 335
HpyCH4IV ACGT 2 cut(s) 282, 458
HpyCH4V TGCA 1 cut(s) 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 73
HpySE526I ACGT 2 cut(s) 282, 458
Hsp92II CATG 1 cut(s) 211
Ksp22I TGATCA 1 cut(s) 234
Kzo9I GATC 2 cut(s) 234, 371
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 338, 405, 426
LpnPI CCDG 6 cut(s) 27, 278, 339, 350, 355, 431
MaeI CTAG 1 cut(s) 83
MaeII ACGT 2 cut(s) 282, 458
MaeIII GTNAC 3 cut(s) 285, 360, 467
MalI GATC 2 cut(s) 236, 373
MboI GATC 2 cut(s) 234, 371
MboII GAAGA 1 cut(s) 424
MfeI CAATTG 2 cut(s) 38, 68
MflI RGATCY 1 cut(s) 371
MhlI GDGCHC 1 cut(s) 402
MluCI AATT 5 cut(s) 38, 68, 129, 172, 266
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 4 cut(s) 66, 171, 233, 300
MseI TTAA 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 14
MunI CAATTG 2 cut(s) 38, 68
MwoI GCNNNNNNNGC 1 cut(s) 73
NciI CCSGG 1 cut(s) 14
NdeII GATC 2 cut(s) 234, 371
NlaIII CATG 1 cut(s) 211
NlaIV GGNNCC 2 cut(s) 142, 340
NmuCI GTSAC 1 cut(s) 360
OliI CACNNNNGTG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 322, 429
PfoI TCCNGGA 1 cut(s) 12
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 142, 340
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
RseI CAYNNNNRTG 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 29
Sau3AI GATC 2 cut(s) 234, 371
SchI GAGTC 1 cut(s) 178
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 402
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 186
SmoI CTYRAG 1 cut(s) 186
Sse9I AATT 5 cut(s) 38, 68, 129, 172, 266
SspI AATATT 1 cut(s) 437
SspMI CTAG 1 cut(s) 83
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 335
TaiI ACGT 2 cut(s) 285, 461
TaqI TCGA 1 cut(s) 182
TasI AATT 5 cut(s) 38, 68, 129, 172, 266
TfiI GAWTC 2 cut(s) 322, 429
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 2 cut(s) 340, 369
TseFI GTSAC 1 cut(s) 360
Tsp45I GTSAC 1 cut(s) 360
TspDTI ATGAA 3 cut(s) 182, 210, 362
TspRI CASTG 2 cut(s) 340, 369
XapI RAATTY 1 cut(s) 266
XspI CTAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.