Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000538.1

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

1797 .. 5957

Gene Structure 4161 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000538.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atggtgttttgggaagctaaatggggaagtataatattgccatcagtgatcaggcagtggtactgcgactggggacagtgttggatcttgcaatatgataatgtggagtttgaaacagctgagtacgcaaaactacctattattccaccgtatctacaacccggcaatcagcaatttacatatggtgcaaattttgcatctgcaggagctggtgctctggttgaaactttccacggtttggtgatagaccttaattctcaactttcaaattttgagcgagttcatgagtcattgaggaagaatttaggggatgaagaagccaacactttgatatcaagagctgtttacttatttagtgtcggaggcaacgattactcatacatattcgggacaaactccagcatccagcatcctcacagggaatttgtaggaactgttctaggcaacataactgcagcgatcaaagaagtatacaacaaaggaggaagaaaatttgggtttcttaaccttgatcctcttggttgtataccatactcaagagcacttgagaagaaacaaaaagatggatgctttgaagagattacaccgtatgtagaactccacaatgaagaacttcccaaactccttcaaaagctggagactgaactcaagggatttagatactcgctttccaactataatgagtttctgagtgataggataaataacccttctaaacatggttttaaggaggggaaggtggcatgttgtggaagtggtccgtatagaggaactttcagctgcggaggccaaagaggtactaaagagtatgatttatgcccgaatgcaagtgaatatgtcttctttgactctggtcatccaacagaaggggtcaatcagcaatttgctacgctattttggagtggaactcccaatttcactgctccttacaatctcaaggcactatttgaaagcccaatctctaatttagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

324

Amino Acids

36.43

Weight (kDa)

5.58

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	238
AccI	GTMKAC	2 cut(s)	471, 526
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	2 cut(s)	92, 506
AcsI	RAATTY	5 cut(s)	190, 268, 301, 422, 491
AfaI	GTAC	3 cut(s)	62, 125, 799
AfiI	CCNNNNNNNGG	3 cut(s)	238, 767, 866
AgsI	TTSAA	6 cut(s)	113, 224, 267, 575, 629, 950
AluBI	AGCT	6 cut(s)	17, 119, 209, 341, 634, 780
AluI	AGCT	6 cut(s)	17, 119, 209, 341, 634, 780
Alw21I	GWGCWC	2 cut(s)	217, 544
Alw26I	GTCTC	1 cut(s)	632
AlwI	GGATC	2 cut(s)	92, 506
AlwNI	CAGNNNCTG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	787
ApeKI	GCWGC	2 cut(s)	455, 780
ApoI	RAATTY	5 cut(s)	190, 268, 301, 422, 491
Asp700I	GAANNNNTTC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	758
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	758
BbsI	GAAGAC	1 cut(s)	832
Bbv12I	GWGCWC	2 cut(s)	217, 544
BbvI	GCAGC	2 cut(s)	467, 767
BccI	CCATC	2 cut(s)	49, 557
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	632
BfaI	CTAG	1 cut(s)	440
BfmI	CTRYAG	2 cut(s)	201, 453
BisI	GCNGC	2 cut(s)	456, 781
BlsI	GCNGC	2 cut(s)	457, 782
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	758
BmgT120I	GGNCC	1 cut(s)	758
BmrFI	CCNGG	1 cut(s)	162
BmrI	ACTGGG	1 cut(s)	79
BmsI	GCATC	4 cut(s)	206, 411, 418, 557
BmuI	ACTGGG	1 cut(s)	79
BoxI	GACNNNNGTC	1 cut(s)	852
BpiI	GAAGAC	1 cut(s)	832
BplI	GAGNNNNNCTC	2 cut(s)	892, 924
BpmI	CTGGAG	2 cut(s)	382, 656
BpuEI	CTTGAG	4 cut(s)	520, 566, 632, 920
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 767, 866
Bse1I	ACTGG	1 cut(s)	74
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	5 cut(s)	316, 402, 409, 572, 856
BseLI	CCNNNNNNNGG	3 cut(s)	238, 767, 866
BseMII	CTCAG	2 cut(s)	111, 680
BseNI	ACTGG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	467, 767
BshFI	GGCC	1 cut(s)	789
BsiHKAI	GWGCWC	2 cut(s)	217, 544
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	87, 403
BslI	CCNNNNNNNGG	3 cut(s)	238, 767, 866
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	87, 403
BsmI	GAATGC	1 cut(s)	829
BsnI	GGCC	1 cut(s)	789
Bsp1286I	GDGCHC	2 cut(s)	217, 544
Bsp143I	GATC	4 cut(s)	48, 84, 459, 511
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	1 cut(s)	789
BspCNI	CTCAG	2 cut(s)	112, 681
BspHI	TCATGA	1 cut(s)	283
BspMAI	CTGCAG	2 cut(s)	205, 457
BspPI	GGATC	2 cut(s)	92, 506
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	4 cut(s)	48, 84, 459, 511
BssNAI	GTATAC	2 cut(s)	472, 527
Bst1107I	GTATAC	2 cut(s)	472, 527
Bst4CI	ACNGT	5 cut(s)	78, 150, 236, 436, 588
Bst6I	CTCTTC	1 cut(s)	570
BstAPI	GCANNNNNTGC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	120, 689
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	5 cut(s)	316, 402, 409, 572, 856
BstKTI	GATC	4 cut(s)	51, 87, 462, 514
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	4 cut(s)	48, 84, 459, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 194, 786
BstNSI	RCATGY	1 cut(s)	747
BstPAI	GACNNNNGTC	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	2 cut(s)	201, 453
BstV1I	GCAGC	2 cut(s)	467, 767
BstV2I	GAAGAC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZ17I	GTATAC	2 cut(s)	472, 527
BsuRI	GGCC	1 cut(s)	789
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	5 cut(s)	316, 402, 409, 572, 856
BtsI	GCAGTG	2 cut(s)	62, 918
BtsIMutI	CAGTG	4 cut(s)	51, 62, 83, 918
CaiI	CAGNNNCTG	1 cut(s)	209
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	758
Csp6I	GTAC	3 cut(s)	61, 124, 798
CviAII	CATG	3 cut(s)	284, 719, 744
CviJI	RGCY	9 cut(s)	17, 119, 209, 320, 341, 634, 780, 789, 954
CviKI_1	RGCY	9 cut(s)	17, 119, 209, 320, 341, 634, 780, 789, 954
CviQI	GTAC	3 cut(s)	61, 124, 798
DdeI	CTNAG	2 cut(s)	120, 689
DpnI	GATC	4 cut(s)	50, 86, 461, 513
DpnII	GATC	4 cut(s)	48, 84, 459, 511
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	333
Eco47I	GGWCC	1 cut(s)	758
EcoRV	GATATC	1 cut(s)	333
FaeI	CATG	3 cut(s)	287, 722, 747
FaqI	GGGAC	2 cut(s)	87, 403
FatI	CATG	3 cut(s)	283, 718, 743
FauNDI	CATATG	1 cut(s)	181
FbaI	TGATCA	1 cut(s)	48
FblI	GTMKAC	2 cut(s)	471, 526
Fnu4HI	GCNGC	2 cut(s)	456, 781
FokI	GGATG	5 cut(s)	323, 389, 396, 579, 843
Fsp4HI	GCNGC	2 cut(s)	456, 781
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	2 cut(s)	456, 781
GsuI	CTGGAG	2 cut(s)	382, 656
HaeIII	GGCC	1 cut(s)	789
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	287, 722, 747
HinfI	GANTC	2 cut(s)	287, 848
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	253
Hpy166II	GTNNAC	3 cut(s)	346, 472, 527
Hpy188I	TCNGA	2 cut(s)	362, 690
Hpy188III	TCNNGA	4 cut(s)	284, 336, 388, 537
Hpy8I	GTNNAC	3 cut(s)	346, 472, 527
HpyAV	CCTTC	4 cut(s)	635, 720, 730, 860
HpyCH4III	ACNGT	5 cut(s)	78, 150, 236, 436, 588
HpyCH4V	TGCA	6 cut(s)	91, 188, 197, 203, 455, 827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 194, 786
HpyF3I	CTNAG	2 cut(s)	120, 689
Hsp92II	CATG	3 cut(s)	287, 722, 747
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	4 cut(s)	48, 84, 459, 511
LmnI	GCTCC	2 cut(s)	206, 928
Lsp1109I	GCAGC	2 cut(s)	467, 767
LweI	GCATC	4 cut(s)	206, 411, 418, 557
MaeI	CTAG	1 cut(s)	440
MalI	GATC	4 cut(s)	50, 86, 461, 513
MboI	GATC	4 cut(s)	48, 84, 459, 511
MboII	GAAGA	7 cut(s)	310, 326, 498, 562, 587, 620, 832
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	217, 544
MlyI	GAGTC	2 cut(s)	296, 842
MmeI	TCCRAC	4 cut(s)	62, 340, 696, 884
MnlI	CCTC	9 cut(s)	288, 356, 423, 476, 525, 724, 761, 779, 788
MroXI	GAANNNNTTC	1 cut(s)	612
MseI	TTAA	3 cut(s)	252, 504, 726
MspA1I	CMGCKG	2 cut(s)	119, 780
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	162
Mva1269I	GAATGC	1 cut(s)	829
MwoI	GCNNNNNNNGC	3 cut(s)	125, 194, 786
NciI	CCSGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	181
NdeII	GATC	4 cut(s)	48, 84, 459, 511
NlaIII	CATG	3 cut(s)	287, 722, 747
NspI	RCATGY	1 cut(s)	747
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	366
PctI	GAATGC	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	612
PflMI	CCANNNNNTGG	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	457, 782
PleI	GAGTC	2 cut(s)	295, 842
PpsI	GAGTC	2 cut(s)	295, 842
PshAI	GACNNNNGTC	1 cut(s)	852
PspPI	GGNCC	1 cut(s)	758
PsrI	GAACNNNNNNTAC	2 cut(s)	420, 452
PstI	CTGCAG	2 cut(s)	205, 457
PstNI	CAGNNNCTG	1 cut(s)	209
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	2 cut(s)	119, 780
RsaI	GTAC	3 cut(s)	62, 125, 799
RsaNI	GTAC	3 cut(s)	61, 124, 798
SaqAI	TTAA	3 cut(s)	252, 504, 726
SatI	GCNGC	2 cut(s)	456, 781
Sau3AI	GATC	4 cut(s)	48, 84, 459, 511
Sau96I	GGNCC	1 cut(s)	758
SchI	GAGTC	2 cut(s)	296, 842
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	2 cut(s)	217, 544
SfaNI	GCATC	4 cut(s)	206, 411, 418, 557
SfcI	CTRYAG	2 cut(s)	201, 453
SinI	GGWCC	1 cut(s)	758
SmlI	CTYRAG	4 cut(s)	535, 545, 647, 935
SmoI	CTYRAG	4 cut(s)	535, 545, 647, 935
SsiI	CCGC	1 cut(s)	783
SspI	AATATT	1 cut(s)	36
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	5 cut(s)	78, 150, 236, 436, 588
Tru1I	TTAA	3 cut(s)	252, 504, 726
Tru9I	TTAA	3 cut(s)	252, 504, 726
TscAI	CASTG	4 cut(s)	51, 62, 83, 925
TseI	GCWGC	2 cut(s)	455, 780
TspDTI	ATGAA	3 cut(s)	272, 327, 621
TspGWI	ACGGA	1 cut(s)	750
TspRI	CASTG	4 cut(s)	51, 62, 83, 925
Van91I	CCANNNNNTGG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	758
XapI	RAATTY	5 cut(s)	190, 268, 301, 422, 491
XceI	RCATGY	1 cut(s)	747
XmiI	GTMKAC	2 cut(s)	471, 526
XmnI	GAANNNNTTC	1 cut(s)	612
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.