Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

60573674 .. 60609378

Gene Structure 35705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG447300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGACAAACTCCAGCTTTCAGAACTTTATCTTTGGTTTCTGTACAAGCCTTCTTATCATCACAACCCTAAGCCATATCGGGCGTGGGTTGTCATCGAAGGAACATGCACCCCTTTTCATCTTCGGGGATTCAATATATGATGCTGGAAACAATAACTATATAAACACTAGTTATCGGGCAAATTTTCGGCCATATGGTGAAACCTTTTTTAAGAACCCAACAGGAAGATTTTCAGACGGTCGTCTAATTTCAGATTTTATAGCTGAGTACGCAAAACTACCTATTATTCCACCGTATCTACAACCCGGCAATCAGCAATTTACATATGGTGCAAATTTTGCATCTGCAGGAGCTGGTGCTCTGGTTGAAACTTTCCACGGTTTGGTGATAGACCTTAATTCTCAACTTTCAAATTTTGAGCGAGTTCATGAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCCAACACTTTGATATCAAGAGCTGTTTACTTATTTAGTGTCGGAGGCAACGATTACTCATACATATTCGGGACAAACTCCAGCATCCAGCATCCTCACAGGGAATTTGTAGGAACTGTTCTAGGCAACATAACTGCAGCGATCAAAGAAGTATACAACAAAGGAGGAAGAAAATTTGGGTTTCTTAACCTTGATCCTCTTGGTTGTACACCGTACTCAAGAGCACTTGAGAAGAAACAAAAAGATGGATGCTTTGAAGAGATTACAGCGTATGTAGAACTCCACAATGAAGAACTTCCCAAACTCCTTCAAAAGCTGGAGACTGAACTCAAGGGATTTAGATACTCGCTTTCCAACTATAATGAGTTTCTGAGTGATAGGATAAATAACCCTTCTAAATATGTTGTGGGCTGCAAATTCAGCAGCTATTCAGCAGCCCTTGCACCTCCATGCCCATCAAATACACCAAAAAACGCCTGCAAACATGAATCTAGAGCATATCAAATTTCAATTCTCCAGCCACTCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

330

Amino Acids

36.84

Weight (kDa)

7.62

Isoelectric Point (pI)

29.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	38 - 277	3.2e-26	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	615
AclWI	GGATC	1 cut(s)	650
AcoI	YGGCCR	1 cut(s)	188
AcsI	RAATTY	8 cut(s)	181, 334, 412, 445, 566, 635, 878, 966
AfaI	GTAC	4 cut(s)	43, 269, 670, 677
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	6 cut(s)	132, 368, 411, 719, 773, 972
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	6 cut(s)	15, 263, 353, 485, 778, 888
AluI	AGCT	6 cut(s)	15, 263, 353, 485, 778, 888
Alw21I	GWGCWC	2 cut(s)	361, 688
Alw26I	GTCTC	1 cut(s)	776
AlwI	GGATC	1 cut(s)	650
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	4 cut(s)	599, 873, 885, 896
ApoI	RAATTY	8 cut(s)	181, 334, 412, 445, 566, 635, 878, 966
Asp700I	GAANNNNTTC	2 cut(s)	229, 756
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	209, 397
Bbv12I	GWGCWC	2 cut(s)	361, 688
BbvI	GCAGC	4 cut(s)	611, 860, 897, 908
BccI	CCATC	2 cut(s)	701, 925
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	776
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	3 cut(s)	168, 584, 954
BfmI	CTRYAG	2 cut(s)	345, 597
BisI	GCNGC	4 cut(s)	600, 874, 886, 897
BlsI	GCNGC	4 cut(s)	601, 875, 887, 898
Bme1390I	CCNGG	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	306
BmsI	GCATC	5 cut(s)	130, 350, 555, 562, 701
BoxI	GACNNNNGTC	1 cut(s)	240
BpmI	CTGGAG	3 cut(s)	526, 800, 962
Bpu10I	CCTNAGC	1 cut(s)	68
BpuEI	CTTGAG	3 cut(s)	664, 710, 776
BpuMI	CCSGG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	376
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
BseDI	CCNNGG	1 cut(s)	376
BseGI	GGATG	4 cut(s)	460, 546, 553, 716
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	2 cut(s)	255, 824
BseXI	GCAGC	4 cut(s)	611, 860, 897, 908
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	241
BsiHKAI	GWGCWC	2 cut(s)	361, 688
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	547
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	776
BsmFI	GGGAC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	361, 688
Bsp1407I	TGTACA	2 cut(s)	41, 668
Bsp143I	GATC	2 cut(s)	603, 655
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	2 cut(s)	256, 825
BspHI	TCATGA	1 cut(s)	427
BspMAI	CTGCAG	2 cut(s)	349, 601
BspPI	GGATC	1 cut(s)	650
BsrGI	TGTACA	2 cut(s)	41, 668
BssECI	CCNNGG	1 cut(s)	376
BssMI	GATC	2 cut(s)	603, 655
BssNAI	GTATAC	1 cut(s)	616
Bst1107I	GTATAC	1 cut(s)	616
Bst4CI	ACNGT	5 cut(s)	239, 294, 380, 580, 675
Bst6I	CTCTTC	1 cut(s)	714
BstAPI	GCANNNNNTGC	2 cut(s)	338, 902
BstAUI	TGTACA	2 cut(s)	41, 668
BstC8I	GCNNGC	1 cut(s)	940
BstDEI	CTNAG	3 cut(s)	68, 264, 833
BstDSI	CCRYGG	1 cut(s)	376
BstF5I	GGATG	4 cut(s)	460, 546, 553, 716
BstKTI	GATC	2 cut(s)	606, 658
BstMAI	GTCTC	1 cut(s)	776
BstMBI	GATC	2 cut(s)	603, 655
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 338, 882, 902
BstNSI	RCATGY	1 cut(s)	107
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	1 cut(s)	304
BstSFI	CTRYAG	2 cut(s)	345, 597
BstV1I	GCAGC	4 cut(s)	611, 860, 897, 908
BstZ17I	GTATAC	1 cut(s)	616
BsuRI	GGCC	1 cut(s)	190
BtgI	CCRYGG	1 cut(s)	376
BtsCI	GGATG	4 cut(s)	460, 546, 553, 716
Cac8I	GCNNGC	1 cut(s)	940
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	1 cut(s)	427
Csp6I	GTAC	4 cut(s)	42, 268, 669, 676
CviAII	CATG	4 cut(s)	104, 428, 912, 947
CviQI	GTAC	4 cut(s)	42, 268, 669, 676
DdeI	CTNAG	3 cut(s)	68, 264, 833
DpnI	GATC	2 cut(s)	605, 657
DpnII	GATC	2 cut(s)	603, 655
EaeI	YGGCCR	1 cut(s)	188
Eam1104I	CTCTTC	1 cut(s)	714
EarI	CTCTTC	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	477
EcoRV	GATATC	1 cut(s)	477
FaeI	CATG	4 cut(s)	107, 431, 915, 950
FaqI	GGGAC	1 cut(s)	547
FatI	CATG	4 cut(s)	103, 427, 911, 946
FauNDI	CATATG	2 cut(s)	193, 325
FblI	GTMKAC	1 cut(s)	615
Fnu4HI	GCNGC	4 cut(s)	600, 874, 886, 897
FokI	GGATG	4 cut(s)	467, 533, 540, 723
Fsp4HI	GCNGC	4 cut(s)	600, 874, 886, 897
FspBI	CTAG	3 cut(s)	168, 584, 954
GluI	GCNGC	4 cut(s)	600, 874, 886, 897
GsuI	CTGGAG	3 cut(s)	526, 800, 962
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	4 cut(s)	107, 431, 915, 950
HinfI	GANTC	3 cut(s)	128, 431, 950
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	209, 397
Hpy166II	GTNNAC	3 cut(s)	490, 616, 671
Hpy188I	TCNGA	5 cut(s)	21, 235, 253, 506, 834
Hpy188III	TCNNGA	5 cut(s)	428, 480, 532, 681, 954
Hpy8I	GTNNAC	3 cut(s)	490, 616, 671
HpyAV	CCTTC	4 cut(s)	59, 91, 779, 864
HpyCH4III	ACNGT	5 cut(s)	239, 294, 380, 580, 675
HpyCH4V	TGCA	8 cut(s)	107, 332, 341, 347, 599, 876, 905, 942
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 338, 882, 902
HpyF3I	CTNAG	3 cut(s)	68, 264, 833
Hsp92II	CATG	4 cut(s)	107, 431, 915, 950
Kzo9I	GATC	2 cut(s)	603, 655
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	4 cut(s)	611, 860, 897, 908
LweI	GCATC	5 cut(s)	130, 350, 555, 562, 701
MaeI	CTAG	3 cut(s)	168, 584, 954
MalI	GATC	2 cut(s)	605, 657
MboI	GATC	2 cut(s)	603, 655
MboII	GAAGA	8 cut(s)	112, 237, 454, 470, 642, 706, 731, 764
MhlI	GDGCHC	2 cut(s)	361, 688
MlyI	GAGTC	1 cut(s)	440
MmeI	TCCRAC	2 cut(s)	484, 840
MnlI	CCTC	6 cut(s)	432, 500, 567, 620, 669, 918
MroXI	GAANNNNTTC	2 cut(s)	229, 756
MseI	TTAA	4 cut(s)	210, 396, 648, 991
MslI	CAYNNNNRTG	1 cut(s)	910
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	269, 338, 882, 902
NciI	CCSGG	1 cut(s)	306
NdeI	CATATG	2 cut(s)	193, 325
NdeII	GATC	2 cut(s)	603, 655
NlaIII	CATG	4 cut(s)	107, 431, 915, 950
NspI	RCATGY	1 cut(s)	107
PagI	TCATGA	1 cut(s)	427
PcsI	WCGNNNNNNNCGW	1 cut(s)	510
PdmI	GAANNNNTTC	2 cut(s)	229, 756
PfeI	GAWTC	2 cut(s)	128, 950
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	4 cut(s)	601, 875, 887, 898
PleI	GAGTC	1 cut(s)	439
PpsI	GAGTC	1 cut(s)	439
PshAI	GACNNNNGTC	1 cut(s)	240
PsrI	GAACNNNNNNTAC	2 cut(s)	564, 596
PstI	CTGCAG	2 cut(s)	349, 601
PstNI	CAGNNNCTG	1 cut(s)	353
RsaI	GTAC	4 cut(s)	43, 269, 670, 677
RsaNI	GTAC	4 cut(s)	42, 268, 669, 676
RseI	CAYNNNNRTG	1 cut(s)	910
SaqAI	TTAA	4 cut(s)	210, 396, 648, 991
SatI	GCNGC	4 cut(s)	600, 874, 886, 897
Sau3AI	GATC	2 cut(s)	603, 655
SchI	GAGTC	1 cut(s)	440
ScrFI	CCNGG	1 cut(s)	306
SduI	GDGCHC	2 cut(s)	361, 688
SfaNI	GCATC	5 cut(s)	130, 350, 555, 562, 701
SfcI	CTRYAG	2 cut(s)	345, 597
SmiMI	CAYNNNNRTG	1 cut(s)	910
SmlI	CTYRAG	3 cut(s)	679, 689, 791
SmoI	CTYRAG	3 cut(s)	679, 689, 791
SpeI	ACTAGT	1 cut(s)	167
SspMI	CTAG	3 cut(s)	168, 584, 954
StyD4I	CCNGG	1 cut(s)	304
TaaI	ACNGT	5 cut(s)	239, 294, 380, 580, 675
TaqI	TCGA	1 cut(s)	95
TatI	WGTACW	2 cut(s)	41, 668
TfiI	GAWTC	2 cut(s)	128, 950
Tru1I	TTAA	4 cut(s)	210, 396, 648, 991
Tru9I	TTAA	4 cut(s)	210, 396, 648, 991
TseI	GCWGC	4 cut(s)	599, 873, 885, 896
TspDTI	ATGAA	5 cut(s)	106, 416, 471, 765, 963
Van91I	CCANNNNNTGG	1 cut(s)	382
XapI	RAATTY	8 cut(s)	181, 334, 412, 445, 566, 635, 878, 966
XbaI	TCTAGA	1 cut(s)	953
XceI	RCATGY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	615
XmnI	GAANNNNTTC	2 cut(s)	229, 756
XspI	CTAG	3 cut(s)	168, 584, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.