Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

67704070 .. 67711229

Gene Structure 7160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG460400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAACAGGCGCCCTTGGCTCCTCCCCATCCCGATAATGTCCTCAGTCTCAGTTTCACAGAACAAATATCCATAGAAGATGATGATGTAAGAAACTCAGAATTGATCTCTACTGAGTACGCAAAACTACCTATTATTCCACCGTATCTACAACCCGGCAATCAGCAATTTACATATGGTGCAAATTTTGCATCTGCAGGAGCTGGTGCTCTGGTTGAAACTTTCCACGGTCTGGTGATAGACCTTAATTCTCAACTTTCAAATTTTGAGCGAGTTCATGAGTCATTGAGGAAGAATTTAGGGAATGAGGAAGCCAACACTTTGATATCAAGAGCTGTTAACTTATTTAGTGTCGGAGGCAACGATTACTCATACATATTCGGGACAAACTCCAGCATCCAGCATCCTCACAGGGAATTTGTAGGAACTGTTCTAGGCAACACAACTGCAGCAATCCAAGAAATATACAACAAAGGAGGAAGAAAATTTGGGTTTCTTAGTCTTGATCCTCTTGGTTGTATACCATACTCAAGAGCACTTGAGAAGGGACATAAAGATGGATGCTTTGAAGAGATTACACCGTATGTAGAACTCCACAATGAAGAACTTTCCAAACTCCTTCAAAAGCTGGAGACTGAACTCAAGGGATTTAGATACTCGCTTTCCAACTATAATGAGTTTCTGAGTGCTAGGATAAATAACCCTTCTAAATATGAGAGAAAAGGAAGCAGAAGCAGGACACTATTCACAGTGGAACCCCTTGGCTTTTATCAGCACAAGGAACTCAGTGACCTTCTCCACCGACTCCCGGCGGCCAATGACTTCAAACACACCCACGTAGCATATAAAGTGAGGCTTCATCCCCTTATCCATCATTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

293

Amino Acids

33.05

Weight (kDa)

6.27

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	30 - 235	4.2e-14	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	10
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	520
AciI	CCGC	1 cut(s)	812
AclWI	GGATC	1 cut(s)	500
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	5 cut(s)	184, 262, 295, 416, 485
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	232, 808
AgsI	TTSAA	5 cut(s)	218, 261, 569, 623, 826
AluBI	AGCT	3 cut(s)	203, 335, 628
AluI	AGCT	3 cut(s)	203, 335, 628
Alw21I	GWGCWC	2 cut(s)	211, 538
Alw26I	GTCTC	2 cut(s)	53, 626
AlwI	GGATC	1 cut(s)	500
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	813
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	5 cut(s)	184, 262, 295, 416, 485
AspLEI	GCGC	1 cut(s)	13
AsuC2I	CCSGG	2 cut(s)	156, 809
AsuHPI	GGTGA	1 cut(s)	247
BanI	GGYRCC	1 cut(s)	10
Bbv12I	GWGCWC	2 cut(s)	211, 538
BbvI	GCAGC	1 cut(s)	461
BccI	CCATC	3 cut(s)	36, 551, 879
BcnI	CCSGG	2 cut(s)	156, 809
BcoDI	GTCTC	2 cut(s)	53, 626
BfaI	CTAG	3 cut(s)	434, 690, 880
BfmI	CTRYAG	2 cut(s)	195, 447
BfoI	RGCGCY	1 cut(s)	14
BisI	GCNGC	2 cut(s)	450, 813
BlsI	GCNGC	2 cut(s)	451, 814
Bme1390I	CCNGG	2 cut(s)	156, 809
BmiI	GGNNCC	3 cut(s)	12, 21, 756
BmrFI	CCNGG	2 cut(s)	156, 809
BmsI	GCATC	4 cut(s)	200, 405, 412, 551
BpmI	CTGGAG	2 cut(s)	376, 650
BpuEI	CTTGAG	3 cut(s)	514, 560, 626
BpuMI	CCSGG	2 cut(s)	156, 809
BsaAI	YACGTR	1 cut(s)	838
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	15, 226, 760
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 808
BseDI	CCNNGG	3 cut(s)	15, 226, 760
BseGI	GGATG	5 cut(s)	28, 396, 403, 566, 859
BseLI	CCNNNNNNNGG	2 cut(s)	232, 808
BseMII	CTCAG	6 cut(s)	58, 64, 105, 111, 674, 799
BseRI	GAGGAG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	461
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	211, 538
BsiSI	CCGG	2 cut(s)	156, 809
BslFI	GGGAC	2 cut(s)	397, 561
BslI	CCNNNNNNNGG	2 cut(s)	232, 808
BsmAI	GTCTC	2 cut(s)	53, 626
BsmFI	GGGAC	2 cut(s)	397, 561
BsnI	GGCC	1 cut(s)	815
Bsp1286I	GDGCHC	2 cut(s)	211, 538
Bsp143I	GATC	2 cut(s)	105, 505
BspACI	CCGC	1 cut(s)	812
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	6 cut(s)	57, 63, 106, 110, 675, 798
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	3 cut(s)	12, 21, 756
BspMAI	CTGCAG	2 cut(s)	199, 451
BspPI	GGATC	1 cut(s)	500
BspT107I	GGYRCC	1 cut(s)	10
BssECI	CCNNGG	3 cut(s)	15, 226, 760
BssMI	GATC	2 cut(s)	105, 505
BssNAI	GTATAC	1 cut(s)	521
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	15, 760
Bst1107I	GTATAC	1 cut(s)	521
Bst4CI	ACNGT	5 cut(s)	144, 230, 430, 582, 751
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	11
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBAI	YACGTR	1 cut(s)	838
BstDEI	CTNAG	7 cut(s)	44, 50, 97, 114, 497, 683, 785
BstDSI	CCRYGG	1 cut(s)	226
BstF5I	GGATG	5 cut(s)	28, 396, 403, 566, 859
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	2 cut(s)	108, 508
BstMAI	GTCTC	2 cut(s)	53, 626
BstMBI	GATC	2 cut(s)	105, 505
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 17, 188
BstSCI	CCNGG	2 cut(s)	154, 807
BstSFI	CTRYAG	2 cut(s)	195, 447
BstV1I	GCAGC	1 cut(s)	461
BstZ17I	GTATAC	1 cut(s)	521
BsuRI	GGCC	1 cut(s)	815
BtgI	CCRYGG	1 cut(s)	226
BtsCI	GGATG	5 cut(s)	28, 396, 403, 566, 859
BtsIMutI	CAGTG	2 cut(s)	756, 793
CaiI	CAGNNNCTG	1 cut(s)	203
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	8 cut(s)	20, 203, 314, 335, 628, 765, 815, 856
CviKI_1	RGCY	8 cut(s)	20, 203, 314, 335, 628, 765, 815, 856
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	7 cut(s)	44, 50, 97, 114, 497, 683, 785
DinI	GGCGCC	1 cut(s)	12
DpnI	GATC	2 cut(s)	107, 507
DpnII	GATC	2 cut(s)	105, 505
EaeI	YGGCCR	1 cut(s)	813
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
Eco130I	CCWWGG	2 cut(s)	15, 760
Eco32I	GATATC	1 cut(s)	327
EcoRV	GATATC	1 cut(s)	327
EcoT14I	CCWWGG	2 cut(s)	15, 760
EgeI	GGCGCC	1 cut(s)	12
EheI	GGCGCC	1 cut(s)	12
ErhI	CCWWGG	2 cut(s)	15, 760
FaeI	CATG	1 cut(s)	281
FalI	AAGNNNNNCTT	2 cut(s)	840, 872
FaqI	GGGAC	2 cut(s)	397, 561
FatI	CATG	1 cut(s)	277
FauNDI	CATATG	1 cut(s)	175
FblI	GTMKAC	1 cut(s)	520
Fnu4HI	GCNGC	2 cut(s)	450, 813
FokI	GGATG	5 cut(s)	15, 383, 390, 573, 846
Fsp4HI	GCNGC	2 cut(s)	450, 813
FspBI	CTAG	3 cut(s)	434, 690, 880
GlaI	GCGC	1 cut(s)	12
GluI	GCNGC	2 cut(s)	450, 813
GsuI	CTGGAG	2 cut(s)	376, 650
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	2 cut(s)	156, 809
HhaI	GCGC	1 cut(s)	13
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	2 cut(s)	281, 804
HpaI	GTTAAC	1 cut(s)	340
HpaII	CCGG	2 cut(s)	156, 809
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	340, 521
Hpy188I	TCNGA	3 cut(s)	100, 356, 684
Hpy188III	TCNNGA	6 cut(s)	32, 278, 330, 382, 503, 531
Hpy8I	GTNNAC	2 cut(s)	340, 521
HpyAV	CCTTC	4 cut(s)	538, 629, 714, 803
HpyCH4III	ACNGT	5 cut(s)	144, 230, 430, 582, 751
HpyCH4IV	ACGT	1 cut(s)	837
HpyCH4V	TGCA	5 cut(s)	4, 182, 191, 197, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 17, 188
HpyF3I	CTNAG	7 cut(s)	44, 50, 97, 114, 497, 683, 785
HpySE526I	ACGT	1 cut(s)	837
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	1 cut(s)	11
KasI	GGCGCC	1 cut(s)	10
KspAI	GTTAAC	1 cut(s)	340
Kzo9I	GATC	2 cut(s)	105, 505
LmnI	GCTCC	2 cut(s)	25, 200
Lsp1109I	GCAGC	1 cut(s)	461
LweI	GCATC	4 cut(s)	200, 405, 412, 551
MaeI	CTAG	3 cut(s)	434, 690, 880
MaeII	ACGT	1 cut(s)	837
MaeIII	GTNAC	1 cut(s)	788
MalI	GATC	2 cut(s)	107, 507
MboI	GATC	2 cut(s)	105, 505
MboII	GAAGA	5 cut(s)	89, 304, 492, 581, 614
MhlI	GDGCHC	2 cut(s)	211, 538
MluCI	AATT	8 cut(s)	101, 167, 184, 247, 262, 295, 416, 485
Mly113I	GGCGCC	1 cut(s)	11
MlyI	GAGTC	2 cut(s)	290, 798
MmeI	TCCRAC	2 cut(s)	334, 690
MnlI	CCTC	9 cut(s)	33, 53, 282, 301, 350, 417, 470, 519, 846
MseI	TTAA	2 cut(s)	246, 339
MslI	CAYNNNNRTG	1 cut(s)	555
MspI	CCGG	2 cut(s)	156, 809
MspR9I	CCNGG	2 cut(s)	156, 809
MwoI	GCNNNNNNNGC	3 cut(s)	10, 17, 188
NarI	GGCGCC	1 cut(s)	11
NciI	CCSGG	2 cut(s)	156, 809
NdeI	CATATG	1 cut(s)	175
NdeII	GATC	2 cut(s)	105, 505
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	3 cut(s)	12, 21, 756
NmuCI	GTSAC	1 cut(s)	788
PagI	TCATGA	1 cut(s)	277
PcsI	WCGNNNNNNNCGW	1 cut(s)	360
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	2 cut(s)	451, 814
PleI	GAGTC	2 cut(s)	289, 798
PluTI	GGCGCC	1 cut(s)	14
PpsI	GAGTC	2 cut(s)	289, 798
Ppu21I	YACGTR	1 cut(s)	838
PspN4I	GGNNCC	3 cut(s)	12, 21, 756
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PstI	CTGCAG	2 cut(s)	199, 451
PstNI	CAGNNNCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	2 cut(s)	246, 339
SatI	GCNGC	2 cut(s)	450, 813
Sau3AI	GATC	2 cut(s)	105, 505
SchI	GAGTC	2 cut(s)	290, 798
ScrFI	CCNGG	2 cut(s)	156, 809
SduI	GDGCHC	2 cut(s)	211, 538
SetI	ASST	7 cut(s)	133, 205, 246, 337, 630, 795, 840
SfaNI	GCATC	4 cut(s)	200, 405, 412, 551
SfcI	CTRYAG	2 cut(s)	195, 447
SfoI	GGCGCC	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	555
SmlI	CTYRAG	3 cut(s)	529, 539, 641
SmoI	CTYRAG	3 cut(s)	529, 539, 641
Sse9I	AATT	8 cut(s)	101, 167, 184, 247, 262, 295, 416, 485
SsiI	CCGC	1 cut(s)	812
SspDI	GGCGCC	1 cut(s)	10
SspMI	CTAG	3 cut(s)	434, 690, 880
StyD4I	CCNGG	2 cut(s)	154, 807
StyI	CCWWGG	2 cut(s)	15, 760
TaaI	ACNGT	5 cut(s)	144, 230, 430, 582, 751
TaiI	ACGT	1 cut(s)	840
TasI	AATT	8 cut(s)	101, 167, 184, 247, 262, 295, 416, 485
TauI	GCSGC	1 cut(s)	815
Tru1I	TTAA	2 cut(s)	246, 339
Tru9I	TTAA	2 cut(s)	246, 339
TscAI	CASTG	2 cut(s)	756, 793
TseFI	GTSAC	1 cut(s)	788
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	788
TspDTI	ATGAA	3 cut(s)	266, 615, 848
TspRI	CASTG	2 cut(s)	756, 793
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	5 cut(s)	184, 262, 295, 416, 485
XmiI	GTMKAC	1 cut(s)	520
XspI	CTAG	3 cut(s)	434, 690, 880

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.