RchiOBHm_Chr2g0147441

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000193
Physical Location & Seq
Reverse (-)
65063179 .. 65064365
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51706

Sequence Viewer

Length: 558 bp
ATGGCAACTTCAAGGTTTCAAATATATATCCTGGCCTTTTATGCAAGCCTTCTTGTTCTAAAATGTAGCTGCCTTGGCAATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTTGGTGATGCACTATTTGATAATGGAAACAATAACTACTTAAACACTACTACTAAATATCAATCAAATTTCTGGCCCTATGGGGAAACCTTCTTCAACCACTCAACTGGTAGATTTTCAGATGGGCGTCTAATCTCTGATTTCATTGCTGAGTATGCTAAGTTGCCACTTATACCACCATATTTACAACCTGGGTCCAAAGACTATACTTACGGGATCAACTTTGCATCTTCGGCTGCTGGTGCTCTAGCCGACACTCATCCAGGATTTGTGATAGACCTTACAACTCAACTAAGTTTTTTCAAGAAGGTGGAGAAGCACTTGAGGCACAAGCTAGGTGATGATGATGCTCACACATTGCTGTCCGAAGCGGTTTACTTAATTAGCATCGGAGGCAATGATTATTTTGCACCCTTTGTAAAAAAACTCCAGTTTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

185

Amino Acids

20.79

Weight (kDa)

7.79

Isoelectric Point (pI)

23.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 178 1.2e-11 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 244
AgsI TTSAA 4 cut(s) 12, 20, 214, 421
AjnI CCWGG 3 cut(s) 30, 307, 379
AluBI AGCT 2 cut(s) 69, 451
AluI AGCT 2 cut(s) 69, 451
Alw21I GWGCWC 1 cut(s) 364
AlwI GGATC 1 cut(s) 341
AoxI GGCC 2 cut(s) 33, 191
ApeKI GCWGC 3 cut(s) 69, 104, 353
ApoI RAATTY 1 cut(s) 184
AspS9I GGNCC 2 cut(s) 192, 312
AsuHPI GGTGA 2 cut(s) 134, 467
AvaII GGWCC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 364
BbvI GCAGC 3 cut(s) 56, 116, 340
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 3 cut(s) 32, 309, 381
BfaI CTAG 2 cut(s) 365, 452
BisI GCNGC 3 cut(s) 70, 105, 354
BlsI GCNGC 3 cut(s) 71, 106, 355
Bme1390I CCNGG 3 cut(s) 32, 309, 381
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 2 cut(s) 192, 312
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 32, 309, 381
BmsI GCATC 5 cut(s) 97, 115, 353, 454, 513
BpmI CTGGAG 1 cut(s) 530
BpuEI CTTGAG 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 244
BsaJI CCNNGG 2 cut(s) 73, 308
Bse1I ACTGG 2 cut(s) 229, 547
Bse3DI GCAATG 3 cut(s) 261, 473, 520
BseBI CCWGG 3 cut(s) 32, 309, 381
BseDI CCNNGG 2 cut(s) 73, 308
BseGI GGATG 1 cut(s) 376
BseMI GCAATG 3 cut(s) 261, 473, 520
BseMII CTCAG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 229, 547
BseXI GCAGC 3 cut(s) 56, 116, 340
BshFI GGCC 2 cut(s) 35, 193
BsiHKAI GWGCWC 1 cut(s) 364
BsnI GGCC 2 cut(s) 35, 193
Bsp1286I GDGCHC 1 cut(s) 364
Bsp143I GATC 1 cut(s) 333
BspACI CCGC 1 cut(s) 488
BspANI GGCC 2 cut(s) 35, 193
BspCNI CTCAG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 1 cut(s) 341
BsrDI GCAATG 3 cut(s) 261, 473, 520
BsrI ACTGG 2 cut(s) 229, 547
BssECI CCNNGG 2 cut(s) 73, 308
BssMI GATC 1 cut(s) 333
BssNI GRCGYC 1 cut(s) 244
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 3 cut(s) 32, 309, 381
BstACI GRCGYC 1 cut(s) 244
BstC8I GCNNGC 1 cut(s) 46
BstDEI CTNAG 3 cut(s) 267, 276, 410
BstF5I GGATG 1 cut(s) 376
BstKTI GATC 1 cut(s) 336
BstMBI GATC 1 cut(s) 333
BstMWI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
BstNI CCWGG 3 cut(s) 32, 309, 381
BstNSI RCATGY 1 cut(s) 104
BstSCI CCNGG 3 cut(s) 30, 307, 379
BstV1I GCAGC 3 cut(s) 56, 116, 340
BstXI CCANNNNNNTGG 1 cut(s) 224
BsuRI GGCC 2 cut(s) 35, 193
BtsCI GGATG 1 cut(s) 376
Cac8I GCNNGC 1 cut(s) 46
Cfr13I GGNCC 2 cut(s) 192, 312
CseI GACGC 1 cut(s) 233
CviAII CATG 1 cut(s) 101
CviJI RGCY 8 cut(s) 35, 48, 69, 107, 193, 353, 368, 451
CviKI_1 RGCY 8 cut(s) 35, 48, 69, 107, 193, 353, 368, 451
DdeI CTNAG 3 cut(s) 267, 276, 410
DpnI GATC 1 cut(s) 335
DpnII GATC 1 cut(s) 333
Eco130I CCWWGG 1 cut(s) 73
Eco47I GGWCC 1 cut(s) 312
EcoRII CCWGG 3 cut(s) 30, 307, 379
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 104
FatI CATG 1 cut(s) 100
Fnu4HI GCNGC 3 cut(s) 70, 105, 354
FokI GGATG 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 70, 105, 354
FspBI CTAG 2 cut(s) 365, 452
GluI GCNGC 3 cut(s) 70, 105, 354
GsuI CTGGAG 1 cut(s) 530
HaeIII GGCC 2 cut(s) 35, 193
HgaI GACGC 1 cut(s) 233
Hin1I GRCGYC 1 cut(s) 244
Hin1II CATG 1 cut(s) 104
HphI GGTGA 2 cut(s) 134, 467
Hpy166II GTNNAC 1 cut(s) 493
Hpy188I TCNGA 5 cut(s) 93, 238, 256, 484, 509
Hpy188III TCNNGA 1 cut(s) 421
Hpy8I GTNNAC 1 cut(s) 493
HpyAV CCTTC 3 cut(s) 59, 217, 418
HpyCH4V TGCA 6 cut(s) 44, 88, 104, 128, 344, 527
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
HpyF3I CTNAG 3 cut(s) 267, 276, 410
Hsp92I GRCGYC 1 cut(s) 244
Hsp92II CATG 1 cut(s) 104
Kzo9I GATC 1 cut(s) 333
LpnPI CCDG 9 cut(s) 17, 44, 175, 210, 294, 321, 342, 366, 393
Lsp1109I GCAGC 3 cut(s) 56, 116, 340
LweI GCATC 5 cut(s) 97, 115, 353, 454, 513
MaeI CTAG 2 cut(s) 365, 452
MalI GATC 1 cut(s) 335
MboI GATC 1 cut(s) 333
MboII GAAGA 2 cut(s) 202, 339
MhlI GDGCHC 1 cut(s) 364
MluCI AATT 3 cut(s) 79, 184, 498
MnlI CCTC 2 cut(s) 435, 503
MseI TTAA 2 cut(s) 158, 497
MspR9I CCNGG 3 cut(s) 32, 309, 381
MvaI CCWGG 3 cut(s) 32, 309, 381
MwoI GCNNNNNNNGC 7 cut(s) 41, 75, 272, 350, 359, 442, 510
NdeII GATC 1 cut(s) 333
NlaIII CATG 1 cut(s) 104
NlaIV GGNNCC 1 cut(s) 313
NspI RCATGY 1 cut(s) 104
PfoI TCCNGGA 1 cut(s) 379
PkrI GCNGC 3 cut(s) 71, 106, 355
Psp6I CCWGG 3 cut(s) 30, 307, 379
PspGI CCWGG 3 cut(s) 30, 307, 379
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 192, 312
SaqAI TTAA 2 cut(s) 158, 497
SatI GCNGC 3 cut(s) 70, 105, 354
Sau3AI GATC 1 cut(s) 333
Sau96I GGNCC 2 cut(s) 192, 312
ScrFI CCNGG 3 cut(s) 32, 309, 381
SduI GDGCHC 1 cut(s) 364
SetI ASST 8 cut(s) 17, 71, 209, 310, 399, 429, 453, 457
SfaNI GCATC 5 cut(s) 97, 115, 353, 454, 513
SinI GGWCC 1 cut(s) 312
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 3 cut(s) 79, 184, 498
SsiI CCGC 1 cut(s) 488
SspMI CTAG 2 cut(s) 365, 452
StyD4I CCNGG 3 cut(s) 30, 307, 379
StyI CCWWGG 1 cut(s) 73
TasI AATT 3 cut(s) 79, 184, 498
Tru1I TTAA 2 cut(s) 158, 497
Tru9I TTAA 2 cut(s) 158, 497
TseI GCWGC 3 cut(s) 69, 104, 353
TspDTI ATGAA 2 cut(s) 103, 250
VpaK11BI GGWCC 1 cut(s) 312
XapI RAATTY 1 cut(s) 184
XceI RCATGY 1 cut(s) 104
XspI CTAG 2 cut(s) 365, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.