Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

10257928 .. 10258695

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG051600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGTGATTGGCAACATAACACATGTGGTCAAAGAAATATACAAGAAAGGAGGAAGGAAATTTGGGTTTTTAAGCTTGGGACCAATTGGTTGTCACCCAGCTTTGCTAGCATTTCGGCCAGAAAAAATAGGATTTTGCATGGAAGAACTCACAGAAGAAGCACAAATACACAATAAGGCAATTTTGAAAGTCCTCCATGCGCTAGAGATCAAGCTGAAAGGATTAAGATATTCGTACTTCGACTTTTATACTTCCATGAGTGAAAGATTGAATAACCCAACAAAATACGGTTTCAAGGAAGGGAAGAAGGCATGCTGTGGAAGTGGTCCATACAGAGCCATTAACTGTGGAGGACAGGGGCCAGAGAAAGAGTATGAACTATGTGACAATCCTAAGGACTGTGTGTTCTTCGATGGCGGTCATCCTACAGAAAGAACTAACCAGCAATTTTCCAAGCTAATGTGGAGTGGAAATTCCAATGTCACATGGCCTTGCAATATTCAAGAACTATTTGGAACTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

8.58

Isoelectric Point (pI)

36.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	11 - 152	7.9e-13	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	116
AcsI	RAATTY	2 cut(s)	59, 472
AfaI	GTAC	1 cut(s)	236
AflIII	ACRYGT	1 cut(s)	22
AgsI	TTSAA	4 cut(s)	187, 271, 295, 503
AloI	GAACNNNNNNTCC	2 cut(s)	389, 421
AluBI	AGCT	4 cut(s)	75, 101, 214, 457
AluI	AGCT	4 cut(s)	75, 101, 214, 457
AoxI	GGCC	3 cut(s)	116, 359, 488
ApoI	RAATTY	2 cut(s)	59, 472
AspLEI	GCGC	1 cut(s)	202
AspS9I	GGNCC	3 cut(s)	80, 326, 359
AsuHPI	GGTGA	2 cut(s)	16, 86
AsuNHI	GCTAGC	1 cut(s)	106
AvaII	GGWCC	2 cut(s)	80, 326
AxyI	CCTNAGG	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	150, 182
BccI	CCATC	1 cut(s)	407
BfaI	CTAG	2 cut(s)	107, 203
BfmI	CTRYAG	1 cut(s)	426
Bme18I	GGWCC	2 cut(s)	80, 326
BmgT120I	GGNCC	3 cut(s)	80, 326, 359
BmiI	GGNNCC	2 cut(s)	81, 360
BmtI	GCTAGC	1 cut(s)	110
Bse21I	CCTNAGG	1 cut(s)	393
BseGI	GGATG	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	3 cut(s)	118, 361, 490
BslFI	GGGAC	1 cut(s)	93
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	3 cut(s)	118, 361, 490
Bsp143I	GATC	1 cut(s)	207
BspACI	CCGC	1 cut(s)	417
BspANI	GGCC	3 cut(s)	118, 361, 490
BspLI	GGNNCC	2 cut(s)	81, 360
BspOI	GCTAGC	1 cut(s)	110
BssMI	GATC	1 cut(s)	207
Bst4CI	ACNGT	3 cut(s)	290, 347, 401
BstC8I	GCNNGC	2 cut(s)	108, 313
BstDEI	CTNAG	1 cut(s)	393
BstF5I	GGATG	1 cut(s)	421
BstHHI	GCGC	1 cut(s)	202
BstKTI	GATC	1 cut(s)	210
BstMBI	GATC	1 cut(s)	207
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstNSI	RCATGY	2 cut(s)	26, 315
BstSFI	CTRYAG	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	118, 361, 490
BtsCI	GGATG	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	108, 313
CfoI	GCGC	1 cut(s)	202
Cfr13I	GGNCC	3 cut(s)	80, 326, 359
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	6 cut(s)	23, 139, 197, 256, 312, 486
CviJI	RGCY	8 cut(s)	75, 101, 118, 214, 338, 361, 457, 490
CviKI_1	RGCY	8 cut(s)	75, 101, 118, 214, 338, 361, 457, 490
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	209
DpnII	GATC	1 cut(s)	207
EaeI	YGGCCR	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	80, 326
Eco81I	CCTNAGG	1 cut(s)	393
FaeI	CATG	6 cut(s)	26, 142, 200, 259, 315, 489
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	6 cut(s)	22, 138, 196, 255, 311, 485
FokI	GGATG	1 cut(s)	408
FspBI	CTAG	2 cut(s)	107, 203
GlaI	GCGC	1 cut(s)	201
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	3 cut(s)	118, 361, 490
HhaI	GCGC	1 cut(s)	202
Hin1II	CATG	6 cut(s)	26, 142, 200, 259, 315, 489
Hin6I	GCGC	1 cut(s)	200
HinP1I	GCGC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	73
HphI	GGTGA	2 cut(s)	16, 86
Hpy188III	TCNNGA	1 cut(s)	503
HpyAV	CCTTC	3 cut(s)	48, 293, 301
HpyCH4III	ACNGT	3 cut(s)	290, 347, 401
HpyCH4V	TGCA	2 cut(s)	138, 495
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	6 cut(s)	26, 142, 200, 259, 315, 489
HspAI	GCGC	1 cut(s)	200
Kzo9I	GATC	1 cut(s)	207
LpnPI	CCDG	5 cut(s)	111, 132, 341, 375, 455
MaeI	CTAG	2 cut(s)	107, 203
MaeIII	GTNAC	3 cut(s)	92, 383, 481
MalI	GATC	1 cut(s)	209
MboI	GATC	1 cut(s)	207
MboII	GAAGA	4 cut(s)	155, 167, 316, 400
MfeI	CAATTG	1 cut(s)	84
MluCI	AATT	5 cut(s)	59, 84, 180, 446, 472
MnlI	CCTC	3 cut(s)	44, 203, 344
MseI	TTAA	3 cut(s)	71, 224, 342
MunI	CAATTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	107
NdeII	GATC	1 cut(s)	207
NheI	GCTAGC	1 cut(s)	106
NlaIII	CATG	6 cut(s)	26, 142, 200, 259, 315, 489
NlaIV	GGNNCC	2 cut(s)	81, 360
NmuCI	GTSAC	3 cut(s)	92, 383, 481
NspI	RCATGY	2 cut(s)	26, 315
PaeI	GCATGC	1 cut(s)	315
PciI	ACATGT	1 cut(s)	22
PscI	ACATGT	1 cut(s)	22
PspFI	CCCAGC	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	81, 360
PspPI	GGNCC	3 cut(s)	80, 326, 359
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SaqAI	TTAA	3 cut(s)	71, 224, 342
Sau3AI	GATC	1 cut(s)	207
Sau96I	GGNCC	3 cut(s)	80, 326, 359
SetI	ASST	4 cut(s)	77, 103, 216, 459
SfcI	CTRYAG	1 cut(s)	426
SinI	GGWCC	2 cut(s)	80, 326
SphI	GCATGC	1 cut(s)	315
Sse9I	AATT	5 cut(s)	59, 84, 180, 446, 472
SsiI	CCGC	1 cut(s)	417
SspI	AATATT	1 cut(s)	499
SspMI	CTAG	2 cut(s)	107, 203
TaaI	ACNGT	3 cut(s)	290, 347, 401
TaqI	TCGA	2 cut(s)	240, 411
TasI	AATT	5 cut(s)	59, 84, 180, 446, 472
Tru1I	TTAA	3 cut(s)	71, 224, 342
Tru9I	TTAA	3 cut(s)	71, 224, 342
TseFI	GTSAC	3 cut(s)	92, 383, 481
Tsp45I	GTSAC	3 cut(s)	92, 383, 481
TspDTI	ATGAA	1 cut(s)	390
VpaK11BI	GGWCC	2 cut(s)	80, 326
XapI	RAATTY	2 cut(s)	59, 472
XceI	RCATGY	2 cut(s)	26, 315
XspI	CTAG	2 cut(s)	107, 203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.