Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Forward (+)

21178829 .. 21180839

Gene Structure 2011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAAACACCAGCTTCCACTTTATCTTTGGTTTCTGTACAAGCCTTCTCATCATCACAACCCTTAGCCACAGTGAGCGTGGGTTGTCGAAGAAGGAACATGCACCTATTTTCATCTTCGGGGATTCAATATTTGATGCTGGAAACAATAACTACATCAACACTAGTTTGCGGGCAAATTTTCGGCCATATGGTGATGTCTTTTTTAAATATCCAACGGGAAGATTTTCGAATGGTCGTTTAATTTCAGATTTTATAGCTGAGTATGCAAAACTACCTATTATTCCACCATATCTACAACCCGGCAACCATCAATTTACATATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTCTAGTTGAAACTAGCCAAGGTTTGGTGATAGACCTTACTTCTCAGCTTTCATATTTTGAGCAAGTTCGTAAGTCGTTGAGGAAGAATTTAGGGGATGAAGAAGCTAAGACTCTGATATCAAGAGCTATTTACTTGTTTAGTGTCGGAGGCAATGATTACTCATACATATTTGGTACAAACTCTAGCATCCTTCGAACCTACTCTCGTAGGGAATTTGTAGGAACAGTTCTAGGCAACATAACTGCAGCAATCAAAGAAATATACAAGAAAGGAGGAAGAAATTTTGGGTTTCTTAGCCTTGATCCTCTTGGTTGTTTACCGTTCGCAAGAGCAGTTGAGCAGGAACAAAAAGGTCATGGATGCTTTGAAGAAATTACACCGTATGTAAAACTCCACAACAAAGCACTTCCAAAACTCCTTCAGACGCTGGAGACTAAACTCAAGGGATTCAGATACTCACTTTCTGACTATAATGAGTTTCTGAGAGAGAGGATGAATCACCCTTCTAAATATGGTTTTGAGGAGGGGAAGGTGGCATGTTGTGGAAGTGGTCCATATAGAGGAATTTTAAGCTGCGGAGGCGAGAGAGGTATCAAAGAGTATTATTTGTGCCCTAATGCAAGTAAATATGTCTTCTTTGACTCTGCCCATCCAACAGAAAGGGTCAATCAGCAATTTGCTAGGCTATTCTGGAGTGGAACTCCCAATTCCACTGCTCCTTACAATCTCAAAGCACTATTCGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

368

Amino Acids

41.3

Weight (kDa)

9.05

Isoelectric Point (pI)

28.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	37 - 348	4.3e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	379
AciI	CCGC	2 cut(s)	172, 933
AclWI	GGATC	1 cut(s)	653
AcoI	YGGCCR	1 cut(s)	185
AcsI	RAATTY	5 cut(s)	178, 442, 569, 637, 921
AcuI	CTGAAG	1 cut(s)	761
AfaI	GTAC	2 cut(s)	40, 532
AfiI	CCNNNNNNNGG	2 cut(s)	379, 917
AgsI	TTSAA	3 cut(s)	129, 365, 725
AhlI	ACTAGT	1 cut(s)	164
AluBI	AGCT	7 cut(s)	15, 260, 350, 403, 461, 482, 930
AluI	AGCT	7 cut(s)	15, 260, 350, 403, 461, 482, 930
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	782
AlwI	GGATC	1 cut(s)	653
AlwNI	CAGNNNCTG	2 cut(s)	350, 784
AoxI	GGCC	1 cut(s)	185
ApeKI	GCWGC	2 cut(s)	602, 930
ApoI	RAATTY	5 cut(s)	178, 442, 569, 637, 921
Asp700I	GAANNNNTTC	1 cut(s)	226
AspS9I	GGNCC	1 cut(s)	908
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	206, 394, 848
AsuII	TTCGAA	3 cut(s)	230, 550, 1098
AvaII	GGWCC	1 cut(s)	908
BaeGI	GKGCMC	1 cut(s)	971
BbsI	GAAGAC	1 cut(s)	982
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	2 cut(s)	614, 917
BccI	CCATC	2 cut(s)	318, 1014
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	782
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	6 cut(s)	165, 359, 369, 540, 587, 1038
BfmI	CTRYAG	2 cut(s)	342, 600
BisI	GCNGC	2 cut(s)	603, 931
BlsI	GCNGC	2 cut(s)	604, 932
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	908
BmgT120I	GGNCC	1 cut(s)	908
BmrFI	CCNGG	1 cut(s)	303
BmsI	GCATC	4 cut(s)	127, 347, 552, 707
BpiI	GAAGAC	1 cut(s)	982
BplI	GAGNNNNNCTC	2 cut(s)	1042, 1074
BpmI	CTGGAG	2 cut(s)	806, 1069
Bpu10I	CCTNAGC	1 cut(s)	65
Bpu14I	TTCGAA	3 cut(s)	230, 550, 1098
BpuEI	CTTGAG	1 cut(s)	782
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 917
Bse3DI	GCAATG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	5 cut(s)	457, 543, 722, 855, 1006
BseLI	CCNNNNNNNGG	2 cut(s)	379, 917
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	3 cut(s)	252, 413, 830
BseRI	GAGGAG	1 cut(s)	893
BseSI	GKGCMC	1 cut(s)	971
BseXI	GCAGC	2 cut(s)	614, 917
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	379, 917
BsmAI	GTCTC	1 cut(s)	782
BsnI	GGCC	1 cut(s)	187
Bsp119I	TTCGAA	3 cut(s)	230, 550, 1098
Bsp1286I	GDGCHC	2 cut(s)	358, 971
Bsp1407I	TGTACA	1 cut(s)	38
Bsp143I	GATC	1 cut(s)	658
BspACI	CCGC	2 cut(s)	172, 933
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	3 cut(s)	253, 412, 831
BspMAI	CTGCAG	2 cut(s)	346, 604
BspPI	GGATC	1 cut(s)	653
BspT104I	TTCGAA	3 cut(s)	230, 550, 1098
BsrDI	GCAATG	1 cut(s)	514
BsrGI	TGTACA	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	658
BssT1I	CCWWGG	1 cut(s)	373
Bst4CI	ACNGT	4 cut(s)	74, 583, 678, 738
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	1 cut(s)	38
BstBI	TTCGAA	3 cut(s)	230, 550, 1098
BstC8I	GCNNGC	1 cut(s)	174
BstDEI	CTNAG	6 cut(s)	65, 261, 399, 462, 650, 839
BstF5I	GGATG	5 cut(s)	457, 543, 722, 855, 1006
BstKTI	GATC	1 cut(s)	661
BstMAI	GTCTC	1 cut(s)	782
BstMBI	GATC	1 cut(s)	658
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 335, 936
BstNSI	RCATGY	2 cut(s)	104, 897
BstSCI	CCNGG	1 cut(s)	301
BstSFI	CTRYAG	2 cut(s)	342, 600
BstSLI	GKGCMC	1 cut(s)	971
BstV1I	GCAGC	2 cut(s)	614, 917
BstV2I	GAAGAC	1 cut(s)	982
BsuRI	GGCC	1 cut(s)	187
BtsCI	GGATG	5 cut(s)	457, 543, 722, 855, 1006
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	2 cut(s)	79, 1068
Cac8I	GCNNGC	1 cut(s)	174
CaiI	CAGNNNCTG	2 cut(s)	350, 784
Cfr13I	GGNCC	1 cut(s)	908
CseI	GACGC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	39, 531
CviAII	CATG	3 cut(s)	101, 713, 894
CviQI	GTAC	2 cut(s)	39, 531
DdeI	CTNAG	6 cut(s)	65, 261, 399, 462, 650, 839
DpnI	GATC	1 cut(s)	660
DpnII	GATC	1 cut(s)	658
DraI	TTTAAA	1 cut(s)	208
EaeI	YGGCCR	1 cut(s)	185
Eco130I	CCWWGG	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	908
Eco57I	CTGAAG	1 cut(s)	761
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	3 cut(s)	104, 716, 897
FatI	CATG	3 cut(s)	100, 712, 893
FauI	CCCGC	1 cut(s)	165
FauNDI	CATATG	2 cut(s)	190, 322
Fnu4HI	GCNGC	2 cut(s)	603, 931
FokI	GGATG	5 cut(s)	464, 530, 729, 862, 993
Fsp4HI	GCNGC	2 cut(s)	603, 931
FspBI	CTAG	6 cut(s)	165, 359, 369, 540, 587, 1038
GluI	GCNGC	2 cut(s)	603, 931
GsuI	CTGGAG	2 cut(s)	806, 1069
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	790
Hin1II	CATG	3 cut(s)	104, 716, 897
HinfI	GANTC	5 cut(s)	125, 466, 804, 853, 998
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	3 cut(s)	206, 394, 848
Hpy166II	GTNNAC	1 cut(s)	674
Hpy188I	TCNGA	7 cut(s)	250, 471, 503, 780, 809, 823, 840
Hpy188III	TCNNGA	2 cut(s)	477, 1048
Hpy8I	GTNNAC	1 cut(s)	674
HpyAV	CCTTC	6 cut(s)	56, 88, 557, 785, 870, 880
HpyCH4III	ACNGT	4 cut(s)	74, 583, 678, 738
HpyCH4V	TGCA	7 cut(s)	104, 269, 329, 338, 344, 602, 977
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 335, 936
HpyF3I	CTNAG	6 cut(s)	65, 261, 399, 462, 650, 839
Hsp92II	CATG	3 cut(s)	104, 716, 897
Kzo9I	GATC	1 cut(s)	658
LmnI	GCTCC	2 cut(s)	347, 1078
LpnPI	CCDG	8 cut(s)	25, 126, 316, 330, 336, 683, 770, 1033
Lsp1109I	GCAGC	2 cut(s)	614, 917
LweI	GCATC	4 cut(s)	127, 347, 552, 707
MaeI	CTAG	6 cut(s)	165, 359, 369, 540, 587, 1038
MalI	GATC	1 cut(s)	660
MboI	GATC	1 cut(s)	658
MboII	GAAGA	8 cut(s)	103, 109, 234, 451, 467, 645, 737, 982
MhlI	GDGCHC	2 cut(s)	358, 971
MlyI	GAGTC	2 cut(s)	460, 992
MmeI	TCCRAC	3 cut(s)	239, 481, 1034
MroXI	GAANNNNTTC	1 cut(s)	226
MseI	TTAA	3 cut(s)	207, 242, 926
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	3 cut(s)	266, 335, 936
NciI	CCSGG	1 cut(s)	303
NdeI	CATATG	2 cut(s)	190, 322
NdeII	GATC	1 cut(s)	658
NlaIII	CATG	3 cut(s)	104, 716, 897
NspI	RCATGY	2 cut(s)	104, 897
NspV	TTCGAA	3 cut(s)	230, 550, 1098
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	125, 804, 853
PflMI	CCANNNNNTGG	1 cut(s)	379
PkrI	GCNGC	2 cut(s)	604, 932
PleI	GAGTC	2 cut(s)	460, 992
PpsI	GAGTC	2 cut(s)	460, 992
PspPI	GGNCC	1 cut(s)	908
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PstI	CTGCAG	2 cut(s)	346, 604
PstNI	CAGNNNCTG	2 cut(s)	350, 784
RsaI	GTAC	2 cut(s)	40, 532
RsaNI	GTAC	2 cut(s)	39, 531
SaqAI	TTAA	3 cut(s)	207, 242, 926
SatI	GCNGC	2 cut(s)	603, 931
Sau3AI	GATC	1 cut(s)	658
Sau96I	GGNCC	1 cut(s)	908
SchI	GAGTC	2 cut(s)	460, 992
ScrFI	CCNGG	1 cut(s)	303
SduI	GDGCHC	2 cut(s)	358, 971
SfaNI	GCATC	4 cut(s)	127, 347, 552, 707
SfcI	CTRYAG	2 cut(s)	342, 600
SfuI	TTCGAA	3 cut(s)	230, 550, 1098
SinI	GGWCC	1 cut(s)	908
SmlI	CTYRAG	1 cut(s)	797
SmoI	CTYRAG	1 cut(s)	797
SpeI	ACTAGT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	172, 933
SspI	AATATT	1 cut(s)	132
SspMI	CTAG	6 cut(s)	165, 359, 369, 540, 587, 1038
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	4 cut(s)	74, 583, 678, 738
TaqI	TCGA	4 cut(s)	89, 230, 550, 1098
TatI	WGTACW	1 cut(s)	38
TfiI	GAWTC	3 cut(s)	125, 804, 853
Tru1I	TTAA	3 cut(s)	207, 242, 926
Tru9I	TTAA	3 cut(s)	207, 242, 926
TscAI	CASTG	2 cut(s)	79, 1075
TseI	GCWGC	2 cut(s)	602, 930
TspDTI	ATGAA	4 cut(s)	103, 396, 468, 866
TspRI	CASTG	2 cut(s)	79, 1075
Van91I	CCANNNNNTGG	1 cut(s)	379
VpaK11BI	GGWCC	1 cut(s)	908
XapI	RAATTY	5 cut(s)	178, 442, 569, 637, 921
XceI	RCATGY	2 cut(s)	104, 897
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 77
XmnI	GAANNNNTTC	1 cut(s)	226
XspI	CTAG	6 cut(s)	165, 359, 369, 540, 587, 1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.