Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

69301578 .. 69310754

Gene Structure 9177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG479500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTGGCAGAGGAGCAGACGGAAGTTGAGAATTCCTTGGGTGGAAATTCAGAAGAGATTCTTTTTTATGAAAAGAAGAAATCCTTTGTATCTGCTGCTGAGTATGCAAAACTACCTATTATTCCACCATATCTACAACCCGGCAACCATCAATTTACATATGGTGCAAACTTTGCATCTGCAGGAGCTGGTGCTCTAGTTGAAACTAGCCAAGGTTTGGTGATAGACCTTACTTCCCAGCTTTCATATTTTGAGCAAGTTCGTAAGTCATTGAGGAAGAATTTAGGGGATGAAGAAGCTAAGACTCTGATATCAAGAGCTATTTACTTGTTTAGTGTCGGAGGCAACGATTATTCATACATATTTGGTACAAACTCCAGCATCCTTCGAACCTACTCTCATAGGGAATTTGTAGGAACAGTTCTAGGCAACATAACTGCAGCAATCGAAGAAATATACAAGAAAGGAGGAAGAAATTTTGGGTTTCTTAGCCTTGATCCTCTTGGTTGTTTACCGTTCGCAAGAGCAGTTGAGCAGGAACAAAAAGGTCATGGATGCTTTGAAGAAATTACGCCGTATGTAAAACTCCACAACAAAGCACTTCCAAAACTCCTTCAGAAGCTAGAGACGAAACTCAAGGGATTCAGATATTCACTTTCTGACTATAATGAGTTTCTGAGAGATAGGATGAATCACCCTTCTAAATATGGTTTTGAGGAGGGGAAGGTGGCATGTTGTGGAAGTGGTCCATATAGAGGAATTTTAAGCTGCGGAGGCGAAAGAGGTATCAAAGAGTATTATTTGTGCCCTAATGCAAGTAAATATGTCTTCTTTGACTCTGCCCATCCAACAGAAAGGGTCAATCAGCAATTTGCTAGGCTATTCTGGAGTGGAACTCCCAATTCCACTGCCCCTTACAATCTCAAAGCACTATTCGAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

314

Amino Acids

35.14

Weight (kDa)

7.58

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	36 - 294	5.1e-20	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	217
AciI	CCGC	1 cut(s)	771
AclWI	GGATC	1 cut(s)	491
AcsI	RAATTY	6 cut(s)	31, 46, 280, 407, 475, 759
AcuI	CTGAAG	1 cut(s)	599
AfaI	GTAC	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	217, 755
AgsI	TTSAA	2 cut(s)	203, 563
AluBI	AGCT	6 cut(s)	188, 241, 299, 320, 622, 768
AluI	AGCT	6 cut(s)	188, 241, 299, 320, 622, 768
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	620
AlwI	GGATC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	188
ApeKI	GCWGC	3 cut(s)	95, 440, 768
ApoI	RAATTY	6 cut(s)	31, 46, 280, 407, 475, 759
Asp700I	GAANNNNTTC	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	746
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	2 cut(s)	232, 686
AsuII	TTCGAA	2 cut(s)	388, 936
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	809
BbsI	GAAGAC	1 cut(s)	820
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	3 cut(s)	82, 452, 755
BccI	CCATC	2 cut(s)	156, 852
BceAI	ACGGC	1 cut(s)	559
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	620
BfaI	CTAG	5 cut(s)	197, 207, 425, 623, 876
BfmI	CTRYAG	2 cut(s)	180, 438
BisI	GCNGC	3 cut(s)	96, 441, 769
BlsI	GCNGC	3 cut(s)	97, 442, 770
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	746
BmgT120I	GGNCC	1 cut(s)	746
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	3 cut(s)	185, 390, 545
BpiI	GAAGAC	1 cut(s)	820
BplI	GAGNNNNNCTC	2 cut(s)	880, 912
BpmI	CTGGAG	2 cut(s)	361, 907
Bpu14I	TTCGAA	2 cut(s)	388, 936
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	141
BsaJI	CCNNGG	2 cut(s)	36, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	217, 755
BseDI	CCNNGG	2 cut(s)	36, 211
BseGI	GGATG	5 cut(s)	295, 381, 560, 693, 844
BseLI	CCNNNNNNNGG	2 cut(s)	217, 755
BseMII	CTCAG	2 cut(s)	90, 668
BseRI	GAGGAG	2 cut(s)	26, 731
BseSI	GKGCMC	1 cut(s)	809
BseXI	GCAGC	3 cut(s)	82, 452, 755
BseYI	CCCAGC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	141
BslI	CCNNNNNNNGG	2 cut(s)	217, 755
BsmAI	GTCTC	1 cut(s)	620
BsmBI	CGTCTC	1 cut(s)	620
Bsp119I	TTCGAA	2 cut(s)	388, 936
Bsp1286I	GDGCHC	2 cut(s)	196, 809
Bsp143I	GATC	1 cut(s)	496
BspACI	CCGC	1 cut(s)	771
BspCNI	CTCAG	2 cut(s)	91, 669
BspMAI	CTGCAG	2 cut(s)	184, 442
BspPI	GGATC	1 cut(s)	491
BspT104I	TTCGAA	2 cut(s)	388, 936
BssECI	CCNNGG	2 cut(s)	36, 211
BssMI	GATC	1 cut(s)	496
BssT1I	CCWWGG	2 cut(s)	36, 211
Bst4CI	ACNGT	2 cut(s)	421, 516
Bst6I	CTCTTC	1 cut(s)	48
BstAPI	GCANNNNNTGC	1 cut(s)	173
BstBI	TTCGAA	2 cut(s)	388, 936
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	4 cut(s)	99, 300, 488, 677
BstF5I	GGATG	5 cut(s)	295, 381, 560, 693, 844
BstKTI	GATC	1 cut(s)	499
BstMAI	GTCTC	1 cut(s)	620
BstMBI	GATC	1 cut(s)	496
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 173, 774
BstNSI	RCATGY	1 cut(s)	735
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	2 cut(s)	180, 438
BstSLI	GKGCMC	1 cut(s)	809
BstV1I	GCAGC	3 cut(s)	82, 452, 755
BstV2I	GAAGAC	1 cut(s)	820
BtsCI	GGATG	5 cut(s)	295, 381, 560, 693, 844
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	1 cut(s)	906
Cac8I	GCNNGC	1 cut(s)	6
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	1 cut(s)	746
Csp6I	GTAC	1 cut(s)	369
CviAII	CATG	2 cut(s)	551, 732
CviJI	RGCY	9 cut(s)	188, 210, 241, 299, 320, 492, 622, 768, 880
CviKI_1	RGCY	9 cut(s)	188, 210, 241, 299, 320, 492, 622, 768, 880
CviQI	GTAC	1 cut(s)	369
DdeI	CTNAG	4 cut(s)	99, 300, 488, 677
DpnI	GATC	1 cut(s)	498
DpnII	GATC	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	2 cut(s)	36, 211
Eco32I	GATATC	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	746
Eco57I	CTGAAG	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	31
EcoRV	GATATC	1 cut(s)	312
EcoT14I	CCWWGG	2 cut(s)	36, 211
ErhI	CCWWGG	2 cut(s)	36, 211
Esp3I	CGTCTC	1 cut(s)	620
FaeI	CATG	2 cut(s)	554, 735
FalI	AAGNNNNNCTT	4 cut(s)	45, 77, 68, 100
FatI	CATG	2 cut(s)	550, 731
FauNDI	CATATG	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	96, 441, 769
FokI	GGATG	5 cut(s)	302, 368, 567, 700, 831
Fsp4HI	GCNGC	3 cut(s)	96, 441, 769
FspBI	CTAG	5 cut(s)	197, 207, 425, 623, 876
GluI	GCNGC	3 cut(s)	96, 441, 769
GsaI	CCCAGC	1 cut(s)	241
GsuI	CTGGAG	2 cut(s)	361, 907
HapII	CCGG	1 cut(s)	141
Hin1II	CATG	2 cut(s)	554, 735
HinfI	GANTC	5 cut(s)	58, 304, 642, 691, 836
HpaII	CCGG	1 cut(s)	141
HphI	GGTGA	2 cut(s)	232, 686
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	7 cut(s)	52, 309, 341, 618, 647, 661, 678
Hpy188III	TCNNGA	2 cut(s)	315, 886
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	4 cut(s)	395, 623, 708, 718
HpyCH4III	ACNGT	2 cut(s)	421, 516
HpyCH4V	TGCA	6 cut(s)	107, 167, 176, 182, 440, 815
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 173, 774
HpyF3I	CTNAG	4 cut(s)	99, 300, 488, 677
Hsp92II	CATG	2 cut(s)	554, 735
Kzo9I	GATC	1 cut(s)	496
LmnI	GCTCC	2 cut(s)	13, 185
LpnPI	CCDG	7 cut(s)	154, 168, 174, 251, 391, 521, 871
Lsp1109I	GCAGC	3 cut(s)	82, 452, 755
LweI	GCATC	3 cut(s)	185, 390, 545
MaeI	CTAG	5 cut(s)	197, 207, 425, 623, 876
MalI	GATC	1 cut(s)	498
MboI	GATC	1 cut(s)	496
MboII	GAAGA	8 cut(s)	65, 88, 289, 305, 461, 483, 575, 820
MhlI	GDGCHC	2 cut(s)	196, 809
MlyI	GAGTC	2 cut(s)	298, 830
MmeI	TCCRAC	2 cut(s)	319, 872
MroXI	GAANNNNTTC	1 cut(s)	57
MseI	TTAA	2 cut(s)	764, 943
MspI	CCGG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	104, 173, 774
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	160
NdeII	GATC	1 cut(s)	496
NlaIII	CATG	2 cut(s)	554, 735
NspI	RCATGY	1 cut(s)	735
NspV	TTCGAA	2 cut(s)	388, 936
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	58, 642, 691
PflMI	CCANNNNNTGG	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	97, 442, 770
PleI	GAGTC	2 cut(s)	298, 830
PpsI	GAGTC	2 cut(s)	298, 830
PspFI	CCCAGC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	746
PsrI	GAACNNNNNNTAC	2 cut(s)	405, 437
PstI	CTGCAG	2 cut(s)	184, 442
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	370
RsaNI	GTAC	1 cut(s)	369
SaqAI	TTAA	2 cut(s)	764, 943
SatI	GCNGC	3 cut(s)	96, 441, 769
Sau3AI	GATC	1 cut(s)	496
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	2 cut(s)	298, 830
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	2 cut(s)	196, 809
SfaNI	GCATC	3 cut(s)	185, 390, 545
SfcI	CTRYAG	2 cut(s)	180, 438
SfuI	TTCGAA	2 cut(s)	388, 936
SinI	GGWCC	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	635
SmoI	CTYRAG	1 cut(s)	635
SsiI	CCGC	1 cut(s)	771
SspMI	CTAG	5 cut(s)	197, 207, 425, 623, 876
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	36, 211
TaaI	ACNGT	2 cut(s)	421, 516
TaqI	TCGA	3 cut(s)	388, 447, 936
TfiI	GAWTC	3 cut(s)	58, 642, 691
Tru1I	TTAA	2 cut(s)	764, 943
Tru9I	TTAA	2 cut(s)	764, 943
TscAI	CASTG	1 cut(s)	913
TseI	GCWGC	3 cut(s)	95, 440, 768
TspDTI	ATGAA	5 cut(s)	84, 234, 306, 345, 704
TspGWI	ACGGA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	913
Van91I	CCANNNNNTGG	1 cut(s)	217
VpaK11BI	GGWCC	1 cut(s)	746
XapI	RAATTY	6 cut(s)	31, 46, 280, 407, 475, 759
XceI	RCATGY	1 cut(s)	735
XmnI	GAANNNNTTC	1 cut(s)	57
XspI	CTAG	5 cut(s)	197, 207, 425, 623, 876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.