RchiOBHm_Chr2g0147311

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000193
Physical Location & Seq
Reverse (-)
64958779 .. 64960482
1704 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51696

Sequence Viewer

Length: 1122 bp
ATGGCAACTTCTTCAAGATTTCAAGTATATGTCCTGGCTTTTTGTGCAACCCTTCTTATTCAAGGTGGCTGTTATGGCCATTCTGTGCATCAGAGAAAACATGCAGCCTTGTTCATCTTCGGGGATTCACTATTTGATGTTGGAAATAATAACTACATAAACACTTCCACTAACTTTCAAGCAAATTTCTTCCCATATGGGGAAACCTTCTTCGGCCACCCGACTGGTAGGGTCTCCGATGGTCGTCTAATGACAGATATCATTGCTGAATATGCAAACTTGCCAATGATTCCACCGTACTTACAACCGGGGTTCGACAACTATACTAATGGTGTGAACTTTGCATCTGCTGGGGCTGGTGCTGCTGGTGCTCTAGCTGAAACGTTTCAAGGATTTGTGTTGGACCTTAAAACTCAACTGGGTTATTTCAAGAATGTGGAGAAGCAGTTGAGGCACAGACTAGGTGAAGCAGAAGCTCACAGATTTTTGTCCGAAGCTGTTTACTTGATTAGCATTGGAAGCAATGATTACATTGCCCCATTCATAACGAATTCAAGTTTGTTCGAGTCTCACTCACATGAAGAATATGTTGGCATGGTCACAGGAAACCTGACAAATGTGATCAAAGAAATATACAAGAAAGGAGGAAGAAAATTTGGGATTGCAGGCATGGAGCCGTTGGGTTGTACACCGGGCATGAGAACAGATAAACCAGGAAACACAAGCACCTGTAAAGAAGAAGTAAATGCAATTTCAAAACTCCACAATAGAGTACTTGCTAAAGTCCTCCTGAAGCTCAAAGGACAGCTCCAAGATTTCATATACTCGAATCCAAATTTCTACAATTACCTAAATGACATAGTTCATAATCCATCAAAACATGGTTTCAAGGAAGGAAAGATGGCATGCTGTGGCTCTGGTCCATACAGAGGAATTATGAGCTGCGGAGGGAAGCGAGGTGTGACTGAGTATCAGTTATGTGACAATGTTACTGACTATGTCTTTTTTGATTCCGGCCATGCAACGGAAAGGGTATACCAGAAAGTTTCCAAGTTATGGTGGAGCCATACTCCTGATGTCACAGCACGTTACATCAATTTGAAAGAGCTATTCGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

373

Amino Acids

41.51

Weight (kDa)

8.03

Isoelectric Point (pI)

20.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 37 - 352 5.1e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1056
AccI GTMKAC 1 cut(s) 1035
AciI CCGC 1 cut(s) 945
AclI AACGTT 1 cut(s) 383
AcoI YGGCCR 3 cut(s) 76, 214, 1015
AcsI RAATTY 4 cut(s) 184, 550, 653, 835
AcuI CTGAAG 1 cut(s) 812
AfaI GTAC 3 cut(s) 299, 688, 774
AfiI CCNNNNNNNGG 4 cut(s) 199, 929, 1024, 1056
AjnI CCWGG 2 cut(s) 33, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 573, 605
AluBI AGCT 7 cut(s) 377, 476, 497, 796, 808, 942, 1108
AluI AGCT 7 cut(s) 377, 476, 497, 796, 808, 942, 1108
Alw21I GWGCWC 1 cut(s) 373
Alw26I GTCTC 2 cut(s) 238, 573
AoxI GGCC 3 cut(s) 76, 214, 1015
ApeKI GCWGC 3 cut(s) 104, 362, 942
ApoI RAATTY 4 cut(s) 184, 550, 653, 835
Asp700I GAANNNNTTC 1 cut(s) 384
AspS9I GGNCC 2 cut(s) 403, 920
AsuC2I CCSGG 2 cut(s) 309, 693
AsuHPI GGTGA 1 cut(s) 476
AsuII TTCGAA 1 cut(s) 1113
AvaII GGWCC 2 cut(s) 403, 920
BalI TGGCCA 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 3 cut(s) 116, 349, 929
BccI CCATC 3 cut(s) 233, 880, 895
BceAI ACGGC 1 cut(s) 661
BciT130I CCWGG 2 cut(s) 35, 714
BclI TGATCA 1 cut(s) 621
BcnI CCSGG 2 cut(s) 309, 693
BcoDI GTCTC 2 cut(s) 238, 573
BfaI CTAG 2 cut(s) 374, 461
BisI GCNGC 3 cut(s) 105, 363, 943
BlsI GCNGC 3 cut(s) 106, 364, 944
BmcAI AGTACT 1 cut(s) 774
Bme1390I CCNGG 4 cut(s) 35, 309, 693, 714
Bme18I GGWCC 2 cut(s) 403, 920
BmgT120I GGNCC 2 cut(s) 403, 920
BmiI GGNNCC 2 cut(s) 675, 1064
BmrFI CCNGG 4 cut(s) 35, 309, 693, 714
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 2 cut(s) 97, 353
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 4 cut(s) 557, 589, 1054, 1086
Bpu14I TTCGAA 1 cut(s) 1113
BpuMI CCSGG 2 cut(s) 309, 693
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 308
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 4 cut(s) 199, 929, 1024, 1056
Bse1I ACTGG 2 cut(s) 229, 423
Bse3DI GCAATG 3 cut(s) 261, 529, 531
BseBI CCWGG 2 cut(s) 35, 714
BseDI CCNNGG 1 cut(s) 308
BseLI CCNNNNNNNGG 4 cut(s) 199, 929, 1024, 1056
BseMI GCAATG 3 cut(s) 261, 529, 531
BseMII CTCAG 1 cut(s) 957
BseNI ACTGG 2 cut(s) 229, 423
BseXI GCAGC 3 cut(s) 116, 349, 929
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 3 cut(s) 78, 216, 1017
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 3 cut(s) 308, 692, 1014
BslI CCNNNNNNNGG 4 cut(s) 199, 929, 1024, 1056
BsmAI GTCTC 2 cut(s) 238, 573
BsnI GGCC 3 cut(s) 78, 216, 1017
Bso31I GGTCTC 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 1113
Bsp1286I GDGCHC 1 cut(s) 373
Bsp1407I TGTACA 1 cut(s) 686
Bsp143I GATC 1 cut(s) 621
BspACI CCGC 1 cut(s) 945
BspANI GGCC 3 cut(s) 78, 216, 1017
BspCNI CTCAG 1 cut(s) 958
BspLI GGNNCC 2 cut(s) 675, 1064
BspT104I TTCGAA 1 cut(s) 1113
BspTNI GGTCTC 1 cut(s) 238
BsrDI GCAATG 3 cut(s) 261, 529, 531
BsrGI TGTACA 1 cut(s) 686
BsrI ACTGG 2 cut(s) 229, 423
BssECI CCNNGG 1 cut(s) 308
BssMI GATC 1 cut(s) 621
BssNAI GTATAC 1 cut(s) 1036
Bst1107I GTATAC 1 cut(s) 1036
Bst2UI CCWGG 2 cut(s) 35, 714
Bst4CI ACNGT 1 cut(s) 297
BstAUI TGTACA 1 cut(s) 686
BstBI TTCGAA 1 cut(s) 1113
BstC8I GCNNGC 2 cut(s) 667, 907
BstDEI CTNAG 1 cut(s) 966
BstKTI GATC 1 cut(s) 624
BstMAI GTCTC 2 cut(s) 238, 573
BstMBI GATC 1 cut(s) 621
BstMWI GCNNNNNNNGC 7 cut(s) 44, 75, 272, 362, 368, 451, 519
BstNI CCWGG 2 cut(s) 35, 714
BstNSI RCATGY 2 cut(s) 104, 909
BstSCI CCNGG 4 cut(s) 33, 307, 691, 712
BstV1I GCAGC 3 cut(s) 116, 349, 929
BstXI CCANNNNNNTGG 1 cut(s) 224
BstZ17I GTATAC 1 cut(s) 1036
BsuRI GGCC 3 cut(s) 78, 216, 1017
Cac8I GCNNGC 2 cut(s) 667, 907
Cfr13I GGNCC 2 cut(s) 403, 920
Csp6I GTAC 3 cut(s) 298, 687, 773
CviAII CATG 8 cut(s) 101, 578, 595, 670, 697, 881, 906, 1019
CviQI GTAC 3 cut(s) 298, 687, 773
DdeI CTNAG 1 cut(s) 966
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
EaeI YGGCCR 3 cut(s) 76, 214, 1015
Eco31I GGTCTC 1 cut(s) 238
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 403, 920
Eco57I CTGAAG 1 cut(s) 812
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 33, 712
EcoRV GATATC 1 cut(s) 259
FaeI CATG 8 cut(s) 104, 581, 598, 673, 700, 884, 909, 1022
FatI CATG 8 cut(s) 100, 577, 594, 669, 696, 880, 905, 1018
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 621
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 3 cut(s) 105, 363, 943
Fsp4HI GCNGC 3 cut(s) 105, 363, 943
FspBI CTAG 2 cut(s) 374, 461
GluI GCNGC 3 cut(s) 105, 363, 943
GsaI CCCAGC 1 cut(s) 354
HaeIII GGCC 3 cut(s) 78, 216, 1017
HapII CCGG 3 cut(s) 308, 692, 1014
Hin1II CATG 8 cut(s) 104, 581, 598, 673, 700, 884, 909, 1022
HinfI GANTC 5 cut(s) 125, 289, 566, 829, 1010
HpaII CCGG 3 cut(s) 308, 692, 1014
HphI GGTGA 1 cut(s) 476
Hpy166II GTNNAC 4 cut(s) 337, 502, 689, 1036
Hpy188I TCNGA 3 cut(s) 93, 238, 493
Hpy188III TCNNGA 4 cut(s) 15, 430, 790, 1073
Hpy8I GTNNAC 4 cut(s) 337, 502, 689, 1036
HpyAV CCTTC 3 cut(s) 62, 217, 887
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 2 cut(s) 383, 1087
HpyCH4V TGCA 8 cut(s) 47, 88, 104, 275, 344, 665, 749, 1022
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 75, 272, 362, 368, 451, 519
HpyF3I CTNAG 1 cut(s) 966
HpySE526I ACGT 2 cut(s) 383, 1087
Hsp92II CATG 8 cut(s) 104, 581, 598, 673, 700, 884, 909, 1022
Ksp22I TGATCA 1 cut(s) 621
Kzo9I GATC 1 cut(s) 621
LmnI GCTCC 3 cut(s) 673, 813, 1062
Lsp1109I GCAGC 3 cut(s) 116, 349, 929
LweI GCATC 2 cut(s) 97, 353
MaeI CTAG 2 cut(s) 374, 461
MaeII ACGT 2 cut(s) 383, 1087
MaeIII GTNAC 6 cut(s) 598, 961, 980, 988, 1078, 1088
MalI GATC 1 cut(s) 623
MboI GATC 1 cut(s) 621
MboII GAAGA 7 cut(s) 3, 109, 181, 202, 593, 660, 749
MhlI GDGCHC 1 cut(s) 373
MlsI TGGCCA 1 cut(s) 78
MluCI AATT 8 cut(s) 184, 550, 653, 750, 835, 844, 933, 1096
MluNI TGGCCA 1 cut(s) 78
MlyI GAGTC 1 cut(s) 575
MmeI TCCRAC 2 cut(s) 121, 381
MnlI CCTC 6 cut(s) 444, 638, 797, 923, 941, 950
Mox20I TGGCCA 1 cut(s) 78
MroXI GAANNNNTTC 1 cut(s) 384
MscI TGGCCA 1 cut(s) 78
MseI TTAA 1 cut(s) 408
MslI CAYNNNNRTG 1 cut(s) 576
Msp20I TGGCCA 1 cut(s) 78
MspI CCGG 3 cut(s) 308, 692, 1014
MspR9I CCNGG 4 cut(s) 35, 309, 693, 714
MvaI CCWGG 2 cut(s) 35, 714
MwoI GCNNNNNNNGC 7 cut(s) 44, 75, 272, 362, 368, 451, 519
NciI CCSGG 2 cut(s) 309, 693
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 621
NlaIII CATG 8 cut(s) 104, 581, 598, 673, 700, 884, 909, 1022
NlaIV GGNNCC 2 cut(s) 675, 1064
NmuCI GTSAC 4 cut(s) 598, 961, 980, 1078
NspI RCATGY 2 cut(s) 104, 909
NspV TTCGAA 1 cut(s) 1113
PaeI GCATGC 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 384
PfeI GAWTC 4 cut(s) 125, 289, 829, 1010
PflFI GACNNNGTC 1 cut(s) 998
PflMI CCANNNNNTGG 1 cut(s) 1056
PkrI GCNGC 3 cut(s) 106, 364, 944
PleI GAGTC 1 cut(s) 574
PpsI GAGTC 1 cut(s) 574
Psp1406I AACGTT 1 cut(s) 383
Psp6I CCWGG 2 cut(s) 33, 712
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 2 cut(s) 33, 712
PspN4I GGNNCC 2 cut(s) 675, 1064
PspPI GGNCC 2 cut(s) 403, 920
PsyI GACNNNGTC 1 cut(s) 998
RsaI GTAC 3 cut(s) 299, 688, 774
RsaNI GTAC 3 cut(s) 298, 687, 773
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 1 cut(s) 408
SatI GCNGC 3 cut(s) 105, 363, 943
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 2 cut(s) 403, 920
ScaI AGTACT 1 cut(s) 774
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 4 cut(s) 35, 309, 693, 714
SduI GDGCHC 1 cut(s) 373
SfaNI GCATC 2 cut(s) 97, 353
SfuI TTCGAA 1 cut(s) 1113
SinI GGWCC 2 cut(s) 403, 920
SmiMI CAYNNNNRTG 1 cut(s) 576
SphI GCATGC 1 cut(s) 909
Sse9I AATT 8 cut(s) 184, 550, 653, 750, 835, 844, 933, 1096
SsiI CCGC 1 cut(s) 945
SspMI CTAG 2 cut(s) 374, 461
StyD4I CCNGG 4 cut(s) 33, 307, 691, 712
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 2 cut(s) 386, 1090
TaqI TCGA 4 cut(s) 315, 564, 827, 1113
TasI AATT 8 cut(s) 184, 550, 653, 750, 835, 844, 933, 1096
TatI WGTACW 2 cut(s) 686, 772
TfiI GAWTC 4 cut(s) 125, 289, 829, 1010
Tru1I TTAA 1 cut(s) 408
Tru9I TTAA 1 cut(s) 408
TseFI GTSAC 4 cut(s) 598, 961, 980, 1078
TseI GCWGC 3 cut(s) 104, 362, 942
Tsp45I GTSAC 4 cut(s) 598, 961, 980, 1078
TspDTI ATGAA 5 cut(s) 103, 532, 594, 808, 854
TspGWI ACGGA 1 cut(s) 1040
Tth111I GACNNNGTC 1 cut(s) 998
Van91I CCANNNNNTGG 1 cut(s) 1056
VpaK11BI GGWCC 2 cut(s) 403, 920
XapI RAATTY 4 cut(s) 184, 550, 653, 835
XceI RCATGY 2 cut(s) 104, 909
XmiI GTMKAC 1 cut(s) 1035
XmnI GAANNNNTTC 1 cut(s) 384
XspI CTAG 2 cut(s) 374, 461
ZrmI AGTACT 1 cut(s) 774
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.