RLG00000020261

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000193
Physical Location & Seq
Reverse (-)
62979027 .. 62979981
955 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020261

Sequence Viewer

Length: 699 bp
ATGATAGACCATACAACTCAACTAAGTTTTTTCAAGAAGGTGGAGAAGCACTTGAGGCACAAGCTAGGTGATGATAATGCTCACACATTGCTGTCCGAAGCGGTTTACTTAAGTAGCATCGGAGGCAATGATTATTTTGCACCCTTCGTAAAAAACTCCAGTTTTTATGAGACTCAATCACCAGAAAAATTTGTTGGCATGGGAATATATAAGAAAGGAGGAAGGAAATTTGGGTTTGCAAATGGAATCCCTCTTGGTTGTGTACCAATGATGAGGGCAACAAAGCCGGGAAACCCAGGCACCTGTGTGGATGAGATTACTGCAGTATTGAAACCGCACAATAAAGTACTTGCTAAAGTCCTCCTCAAGCTTAAAAGACAGCTTCATGGATTTCAATATTCAAATCCAAATGTCTACTCTTACCTGGATGGAATCATTAAGAATCCATCACAACATGGCTTCAAGGAAGGAAAGGTATCATGTTGTGGCTCTGGTCCATACAGAGGAACTATGAGCTGTGGAGGAAAGAGAGGTGTGACCGAGTATCAATTATGTGACAATGTTAACGATTATGTCTTCTTCGACTCTGCTCAACCAACCGACAGGGCTAACGAGCAGGTTTCCAAGTATTGGTGGAGCCATACTACTCCTAATGTGAAAGTGCCTCACGTTTATCTGAAAGAGCTATTCGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

233

Amino Acids

26.0

Weight (kDa)

9.17

Isoelectric Point (pI)

22.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 33 - 210 2.1e-06 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 299
AccB7I CCANNNNNTGG 1 cut(s) 630
AccI GTMKAC 1 cut(s) 414
AciI CCGC 2 cut(s) 101, 335
AcsI RAATTY 2 cut(s) 188, 227
AfaI GTAC 2 cut(s) 264, 348
AfiI CCNNNNNNNGG 2 cut(s) 503, 630
AflII CTTAAG 1 cut(s) 109
AgsI TTSAA 5 cut(s) 34, 331, 395, 402, 463
AjnI CCWGG 2 cut(s) 295, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 177, 209
AleI CACNNNNGTG 1 cut(s) 305
AluBI AGCT 5 cut(s) 64, 370, 382, 516, 685
AluI AGCT 5 cut(s) 64, 370, 382, 516, 685
Alw26I GTCTC 1 cut(s) 164
ApoI RAATTY 2 cut(s) 188, 227
AspS9I GGNCC 1 cut(s) 494
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 2 cut(s) 80, 171
AsuII TTCGAA 1 cut(s) 690
AvaII GGWCC 1 cut(s) 494
BanI GGYRCC 1 cut(s) 299
BbsI GAAGAC 1 cut(s) 568
BccI CCATC 2 cut(s) 422, 454
BciT130I CCWGG 2 cut(s) 297, 425
BcnI CCSGG 1 cut(s) 288
BcoDI GTCTC 1 cut(s) 164
BfaI CTAG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 321
BfrI CTTAAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 607
BmcAI AGTACT 1 cut(s) 348
Bme1390I CCNGG 3 cut(s) 288, 297, 425
Bme18I GGWCC 1 cut(s) 494
BmgT120I GGNCC 1 cut(s) 494
BmiI GGNNCC 2 cut(s) 301, 638
BmrFI CCNGG 3 cut(s) 288, 297, 425
BmsI GCATC 1 cut(s) 126
BpiI GAAGAC 1 cut(s) 568
BpmI CTGGAG 1 cut(s) 142
Bpu14I TTCGAA 1 cut(s) 690
BpuEI CTTGAG 2 cut(s) 73, 350
BpuMI CCSGG 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 630
Bse1I ACTGG 1 cut(s) 159
Bse3DI GCAATG 2 cut(s) 86, 133
BseBI CCWGG 2 cut(s) 297, 425
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 2 cut(s) 316, 433
BseLI CCNNNNNNNGG 2 cut(s) 503, 630
BseMI GCAATG 2 cut(s) 86, 133
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 353
BshNI GGYRCC 1 cut(s) 299
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 2 cut(s) 503, 630
BsmAI GTCTC 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 690
BspACI CCGC 2 cut(s) 101, 335
BspLI GGNNCC 2 cut(s) 301, 638
BspMAI CTGCAG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 607
BspT104I TTCGAA 1 cut(s) 690
BspT107I GGYRCC 1 cut(s) 299
BspTI CTTAAG 1 cut(s) 109
BsrDI GCAATG 2 cut(s) 86, 133
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 1 cut(s) 295
Bst2UI CCWGG 2 cut(s) 297, 425
BstAFI CTTAAG 1 cut(s) 109
BstBI TTCGAA 1 cut(s) 690
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 316, 433
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 2 cut(s) 55, 123
BstNI CCWGG 2 cut(s) 297, 425
BstSCI CCNGG 3 cut(s) 286, 295, 423
BstSFI CTRYAG 1 cut(s) 321
BstV2I GAAGAC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 316, 433
BveI ACCTGC 1 cut(s) 607
Cfr13I GGNCC 1 cut(s) 494
Csp6I GTAC 2 cut(s) 263, 347
CviAII CATG 4 cut(s) 199, 386, 455, 480
CviQI GTAC 2 cut(s) 263, 347
DdeI CTNAG 1 cut(s) 23
Eco47I GGWCC 1 cut(s) 494
EcoRII CCWGG 2 cut(s) 295, 423
FaeI CATG 4 cut(s) 202, 389, 458, 483
FatI CATG 4 cut(s) 198, 385, 454, 479
FblI GTMKAC 1 cut(s) 414
FokI GGATG 2 cut(s) 323, 440
FspBI CTAG 1 cut(s) 65
GsuI CTGGAG 1 cut(s) 142
HapII CCGG 1 cut(s) 287
Hin1II CATG 4 cut(s) 202, 389, 458, 483
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 5 cut(s) 172, 246, 432, 442, 584
HpaI GTTAAC 1 cut(s) 565
HpaII CCGG 1 cut(s) 287
HphI GGTGA 2 cut(s) 80, 171
Hpy166II GTNNAC 4 cut(s) 106, 263, 415, 565
Hpy188I TCNGA 3 cut(s) 97, 122, 678
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 4 cut(s) 106, 263, 415, 565
HpyAV CCTTC 4 cut(s) 31, 154, 216, 461
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 3 cut(s) 140, 239, 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 123
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 669
Hsp92II CATG 4 cut(s) 202, 389, 458, 483
KspAI GTTAAC 1 cut(s) 565
LmnI GCTCC 1 cut(s) 636
LweI GCATC 1 cut(s) 126
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 535, 554
MboII GAAGA 2 cut(s) 568, 571
MluCI AATT 3 cut(s) 188, 227, 548
MlyI GAGTC 2 cut(s) 166, 578
MseI TTAA 4 cut(s) 110, 372, 438, 564
MslI CAYNNNNRTG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 109
MspI CCGG 1 cut(s) 287
MspR9I CCNGG 3 cut(s) 288, 297, 425
MvaI CCWGG 2 cut(s) 297, 425
MwoI GCNNNNNNNGC 2 cut(s) 55, 123
NciI CCSGG 1 cut(s) 288
NlaIII CATG 4 cut(s) 202, 389, 458, 483
NlaIV GGNNCC 2 cut(s) 301, 638
NmuCI GTSAC 2 cut(s) 535, 554
NspV TTCGAA 1 cut(s) 690
OliI CACNNNNGTG 1 cut(s) 305
PfeI GAWTC 3 cut(s) 246, 432, 442
PflMI CCANNNNNTGG 1 cut(s) 630
PleI GAGTC 2 cut(s) 166, 578
PpsI GAGTC 2 cut(s) 166, 578
Psp6I CCWGG 2 cut(s) 295, 423
PspGI CCWGG 2 cut(s) 295, 423
PspN4I GGNNCC 2 cut(s) 301, 638
PspPI GGNCC 1 cut(s) 494
PstI CTGCAG 1 cut(s) 325
RsaI GTAC 2 cut(s) 264, 348
RsaNI GTAC 2 cut(s) 263, 347
RseI CAYNNNNRTG 1 cut(s) 305
SaqAI TTAA 4 cut(s) 110, 372, 438, 564
Sau96I GGNCC 1 cut(s) 494
ScaI AGTACT 1 cut(s) 348
SchI GAGTC 2 cut(s) 166, 578
ScrFI CCNGG 3 cut(s) 288, 297, 425
SfaNI GCATC 1 cut(s) 126
SfcI CTRYAG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 690
SinI GGWCC 1 cut(s) 494
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 3 cut(s) 52, 109, 365
SmoI CTYRAG 3 cut(s) 52, 109, 365
Sse9I AATT 3 cut(s) 188, 227, 548
SsiI CCGC 2 cut(s) 101, 335
SspI AATATT 1 cut(s) 398
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 3 cut(s) 286, 295, 423
TaiI ACGT 1 cut(s) 672
TaqI TCGA 2 cut(s) 582, 690
TaqII GACCGA 1 cut(s) 554
TasI AATT 3 cut(s) 188, 227, 548
TatI WGTACW 1 cut(s) 346
TfiI GAWTC 3 cut(s) 246, 432, 442
Tru1I TTAA 4 cut(s) 110, 372, 438, 564
Tru9I TTAA 4 cut(s) 110, 372, 438, 564
TseFI GTSAC 2 cut(s) 535, 554
Tsp45I GTSAC 2 cut(s) 535, 554
TspDTI ATGAA 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 630
Vha464I CTTAAG 1 cut(s) 109
VpaK11BI GGWCC 1 cut(s) 494
XapI RAATTY 2 cut(s) 188, 227
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 65
ZrmI AGTACT 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.