pycom09g09220

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000193
Physical Location & Seq
Forward (+)
7403375 .. 7405065
1691 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g09220.1

Sequence Viewer

Length: 999 bp
ATGGCCATTCTGTGCTTCAGAAAAAGCATGCAGCCCTATTCATCTTTGGTGATTCATTTTATGATCGATCCTGGAAATAATAACTACATAAACACCAGCACTGATTTCCAGGCCAATTGGTTCCCATATGGTGAGACCTTCTTCAAGTATCCAACTGGCAGATTTTGCGATGGACGTTTAATCCCAGATTTTCTTGCTCAGTATGCCAAGTTACCAATTATACCAGCATATTTACAACCTGGGTTGAACAACTATACTAATGGGGTGAACTTTGCTTCTGGCGGAGCTGGTGCTCTAGTTGAAAGTCATCAGGGACTTGTGATAGACCTTAAAACTCAAATAAGTCAATTCAGGATGGTGGAGAAGCTGTTGAGGCACAAACAAGGTGATGCAGAAGCCTACACAGTGCTCTCCAAAGCTGTTTACATAATTAGCATTGGAGCCAATGACTATATTTCGCCATTAGCATCCAATTTTAGCAATGAAGAATATGTTGGCTTGGTTATTGGCAACCTGACAATTTGGATCAAAGAAATATACAAGAAAGGAGGAAGGAAATTTGGATTTTCAACCTTGCCGCCTCTCAATGAAATACCGAGCCTGAGAGTAAAAAAATCAGGGGACACAAGCCCCTCAGCGGAAGAAGTTATACCACTAGTGAAACTACACAATAAAGCACTTGGAAAACTGCTCCTAAAGCTGAAGAGAGAGCTCGAAGGATTCAAATACTCAACCATTGATGTCCATACATACCTAAAACAAATTATAAATCGTCCATCAAAATATGGCTTCGGTGAAGGAAAGACGGCATGTTGTGGCTCTGGTCCATACGGAGCAATTGATTCTTGTGGAGGGAAGAGAGGAGTGACTAAGTATCAGTTGTGTGACAATGTTGCTGAATACGTATTTTTCGACTCTTTCCATCCAACCGAAAAGGTTTACAGGAAACTATCCAAGTTATGGTGGAGGCATAACTTGAAGGAGCTATTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

333

Amino Acids

37.36

Weight (kDa)

9.19

Isoelectric Point (pI)

27.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 46 - 320 7.1e-27 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AccB7I CCANNNNNTGG 1 cut(s) 960
AciI CCGC 3 cut(s) 282, 578, 638
AclWI GGATC 2 cut(s) 62, 533
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 1 cut(s) 722
AfiI CCNNNNNNNGG 2 cut(s) 637, 960
AgsI TTSAA 7 cut(s) 145, 247, 302, 570, 724, 979, 992
AhlI ACTAGT 1 cut(s) 655
AjnI CCWGG 3 cut(s) 70, 108, 238
AjuI GAANNNNNNNTTGG 2 cut(s) 477, 509
AluBI AGCT 6 cut(s) 287, 367, 419, 700, 712, 985
AluI AGCT 6 cut(s) 287, 367, 419, 700, 712, 985
Alw21I GWGCWC 3 cut(s) 295, 411, 714
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 2 cut(s) 62, 533
AoxI GGCC 2 cut(s) 3, 111
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 557
AspS9I GGNCC 1 cut(s) 824
AsuHPI GGTGA 5 cut(s) 61, 143, 277, 398, 806
AvaII GGWCC 1 cut(s) 824
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 714
BarI GAAGNNNNNNTAC 2 cut(s) 633, 665
Bbv12I GWGCWC 3 cut(s) 295, 411, 714
BbvCI CCTCAGC 1 cut(s) 634
BbvI GCAGC 1 cut(s) 43
BccI CCATC 4 cut(s) 164, 349, 784, 930
BceAI ACGGC 1 cut(s) 822
BciT130I CCWGG 3 cut(s) 72, 110, 240
BciVI GTATCC 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 128
BcuI ACTAGT 1 cut(s) 655
BfaI CTAG 2 cut(s) 296, 656
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 2 cut(s) 32, 578
BlsI GCNGC 2 cut(s) 33, 579
Bme1390I CCNGG 3 cut(s) 72, 110, 240
Bme18I GGWCC 1 cut(s) 824
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 2 cut(s) 122, 442
BmrFI CCNGG 3 cut(s) 72, 110, 240
BmsI GCATC 2 cut(s) 379, 476
Bpu10I CCTNAGC 1 cut(s) 634
Bsa29I ATCGAT 1 cut(s) 66
BsaAI YACGTR 1 cut(s) 904
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 239
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 637, 960
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 1 cut(s) 487
BseBI CCWGG 3 cut(s) 72, 110, 240
BseCI ATCGAT 1 cut(s) 66
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 3 cut(s) 360, 467, 922
BseLI CCNNNNNNNGG 2 cut(s) 637, 960
BseMI GCAATG 1 cut(s) 487
BseMII CTCAG 3 cut(s) 212, 593, 648
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 876
BseXI GCAGC 1 cut(s) 43
BshFI GGCC 2 cut(s) 5, 113
BshVI ATCGAT 1 cut(s) 66
BsiHKAI GWGCWC 3 cut(s) 295, 411, 714
BslFI GGGAC 2 cut(s) 327, 635
BslI CCNNNNNNNGG 2 cut(s) 637, 960
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 2 cut(s) 327, 635
BsnI GGCC 2 cut(s) 5, 113
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 295, 411, 714
Bsp143I GATC 3 cut(s) 63, 67, 525
BspACI CCGC 3 cut(s) 282, 578, 638
BspANI GGCC 2 cut(s) 5, 113
BspCNI CTCAG 3 cut(s) 211, 594, 647
BspDI ATCGAT 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 122, 442
BspPI GGATC 2 cut(s) 62, 533
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 487
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 3 cut(s) 63, 67, 525
Bst2UI CCWGG 3 cut(s) 72, 110, 240
Bst4CI ACNGT 1 cut(s) 406
Bst6I CTCTTC 2 cut(s) 698, 851
BstAPI GCANNNNNTGC 1 cut(s) 165
BstBAI YACGTR 1 cut(s) 904
BstC8I GCNNGC 1 cut(s) 29
BstDEI CTNAG 4 cut(s) 198, 602, 634, 870
BstF5I GGATG 3 cut(s) 360, 467, 922
BstKTI GATC 3 cut(s) 66, 70, 528
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 63, 67, 525
BstMWI GCNNNNNNNGC 4 cut(s) 165, 203, 373, 697
BstNI CCWGG 3 cut(s) 72, 110, 240
BstNSI RCATGY 2 cut(s) 31, 813
BstSCI CCNGG 3 cut(s) 70, 108, 238
BstSNI TACGTA 1 cut(s) 904
BstV1I GCAGC 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 66
BsuI GTATCC 1 cut(s) 159
BsuRI GGCC 2 cut(s) 5, 113
BsuTUI ATCGAT 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 183
BtsCI GGATG 3 cut(s) 360, 467, 922
BtsIMutI CAGTG 2 cut(s) 99, 411
Cac8I GCNNGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 824
ClaI ATCGAT 1 cut(s) 66
CviAII CATG 2 cut(s) 28, 810
DdeI CTNAG 4 cut(s) 198, 602, 634, 870
DpnI GATC 3 cut(s) 65, 69, 527
DpnII GATC 3 cut(s) 63, 67, 525
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 698, 851
EarI CTCTTC 2 cut(s) 698, 851
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 712
Eco105I TACGTA 1 cut(s) 904
Eco24I GRGCYC 1 cut(s) 714
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 712
Eco57I CTGAAG 1 cut(s) 722
EcoICRI GAGCTC 1 cut(s) 712
EcoRII CCWGG 3 cut(s) 70, 108, 238
EcoT38I GRGCYC 1 cut(s) 714
FaeI CATG 2 cut(s) 31, 813
FaqI GGGAC 2 cut(s) 327, 635
FatI CATG 2 cut(s) 27, 809
FauNDI CATATG 1 cut(s) 127
Fnu4HI GCNGC 2 cut(s) 32, 578
FokI GGATG 3 cut(s) 367, 454, 909
FriOI GRGCYC 1 cut(s) 714
Fsp4HI GCNGC 2 cut(s) 32, 578
FspBI CTAG 2 cut(s) 296, 656
GluI GCNGC 2 cut(s) 32, 578
HaeIII GGCC 2 cut(s) 5, 113
Hin1II CATG 2 cut(s) 31, 813
HinfI GANTC 4 cut(s) 52, 720, 842, 914
HphI GGTGA 5 cut(s) 61, 143, 277, 398, 806
Hpy166II GTNNAC 3 cut(s) 268, 424, 940
Hpy188I TCNGA 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 3 cut(s) 268, 424, 940
HpyAV CCTTC 5 cut(s) 148, 546, 710, 791, 973
HpyCH4III ACNGT 1 cut(s) 406
HpyCH4IV ACGT 2 cut(s) 175, 903
HpyCH4V TGCA 2 cut(s) 31, 392
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 203, 373, 697
HpyF3I CTNAG 4 cut(s) 198, 602, 634, 870
HpySE526I ACGT 2 cut(s) 175, 903
Hsp92II CATG 2 cut(s) 31, 813
Kzo9I GATC 3 cut(s) 63, 67, 525
LmnI GCTCC 5 cut(s) 284, 440, 696, 833, 982
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 379, 476
MaeI CTAG 2 cut(s) 296, 656
MaeII ACGT 2 cut(s) 175, 903
MaeIII GTNAC 3 cut(s) 210, 865, 884
MalI GATC 3 cut(s) 65, 69, 527
MboI GATC 3 cut(s) 63, 67, 525
MboII GAAGA 5 cut(s) 133, 497, 653, 715, 868
MfeI CAATTG 2 cut(s) 115, 837
MhlI GDGCHC 3 cut(s) 295, 411, 714
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 9 cut(s) 115, 216, 347, 429, 472, 519, 557, 762, 837
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 908
MmeI TCCRAC 2 cut(s) 176, 950
MnlI CCTC 7 cut(s) 366, 542, 591, 643, 845, 854, 960
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 179, 330
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 638
MspR9I CCNGG 3 cut(s) 72, 110, 240
MunI CAATTG 2 cut(s) 115, 837
MvaI CCWGG 3 cut(s) 72, 110, 240
MwoI GCNNNNNNNGC 4 cut(s) 165, 203, 373, 697
NdeI CATATG 1 cut(s) 127
NdeII GATC 3 cut(s) 63, 67, 525
NlaIII CATG 2 cut(s) 31, 813
NlaIV GGNNCC 2 cut(s) 122, 442
NmuCI GTSAC 2 cut(s) 865, 884
NspI RCATGY 2 cut(s) 31, 813
PaeI GCATGC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 909
PfeI GAWTC 3 cut(s) 52, 720, 842
PflMI CCANNNNNTGG 1 cut(s) 960
PfoI TCCNGGA 1 cut(s) 70
PkrI GCNGC 2 cut(s) 33, 579
PleI GAGTC 1 cut(s) 908
PpsI GAGTC 1 cut(s) 908
Ppu21I YACGTR 1 cut(s) 904
PsiI TTATAA 1 cut(s) 767
Psp124BI GAGCTC 1 cut(s) 714
Psp6I CCWGG 3 cut(s) 70, 108, 238
PspGI CCWGG 3 cut(s) 70, 108, 238
PspN4I GGNNCC 2 cut(s) 122, 442
PspPI GGNCC 1 cut(s) 824
SacI GAGCTC 1 cut(s) 714
SaqAI TTAA 2 cut(s) 179, 330
SatI GCNGC 2 cut(s) 32, 578
Sau3AI GATC 3 cut(s) 63, 67, 525
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 1 cut(s) 908
ScrFI CCNGG 3 cut(s) 72, 110, 240
SduI GDGCHC 3 cut(s) 295, 411, 714
SfaNI GCATC 2 cut(s) 379, 476
SinI GGWCC 1 cut(s) 824
SnaBI TACGTA 1 cut(s) 904
SpeI ACTAGT 1 cut(s) 655
SphI GCATGC 1 cut(s) 31
Sse9I AATT 9 cut(s) 115, 216, 347, 429, 472, 519, 557, 762, 837
SsiI CCGC 3 cut(s) 282, 578, 638
SspMI CTAG 2 cut(s) 296, 656
SstI GAGCTC 1 cut(s) 714
StyD4I CCNGG 3 cut(s) 70, 108, 238
TaaI ACNGT 1 cut(s) 406
TaiI ACGT 2 cut(s) 178, 906
TaqI TCGA 3 cut(s) 66, 714, 912
TasI AATT 9 cut(s) 115, 216, 347, 429, 472, 519, 557, 762, 837
TauI GCSGC 1 cut(s) 580
TfiI GAWTC 3 cut(s) 52, 720, 842
Tru1I TTAA 2 cut(s) 179, 330
Tru9I TTAA 2 cut(s) 179, 330
TscAI CASTG 2 cut(s) 106, 411
TseFI GTSAC 2 cut(s) 865, 884
TseI GCWGC 1 cut(s) 31
Tsp45I GTSAC 2 cut(s) 865, 884
TspDTI ATGAA 4 cut(s) 30, 44, 498, 603
TspGWI ACGGA 1 cut(s) 846
TspRI CASTG 2 cut(s) 106, 411
Van91I CCANNNNNTGG 1 cut(s) 960
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 1 cut(s) 557
XceI RCATGY 2 cut(s) 31, 813
XspI CTAG 2 cut(s) 296, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.