Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

60266725 .. 60267112

Gene Structure 388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG445100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGACTACCCTTCGAAATATGGTTTTGAGAAAGGGAATGTGGCATGCTGTGGAAGCGGTCCTTATCGAGGAATTCTAAACTGTGGAGCGAAAAGAGGTGTTACTGAGTATGAATTATGTGACAATGTTACCGAGTATGTCTTCTTTGACTCAGGTCATGCAACAGAAAGGCTCTATCAGCAATTTGCCAAGCAGTTCTGGAGCGGAGTACCTGCCAATTCCACCGCACCTTACAATTTGAAAGCACTGTTCGAAAGCAAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

88

Amino Acids

9.89

Weight (kDa)

6.54

Isoelectric Point (pI)

35.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	220
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	3 cut(s)	57, 204, 225
AcsI	RAATTY	1 cut(s)	72
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	241
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	59
AsuII	TTCGAA	2 cut(s)	14, 252
AvaII	GGWCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	220
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BoxI	GACNNNNGTC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	133
BpmI	CTGGAG	1 cut(s)	220
Bpu14I	TTCGAA	2 cut(s)	14, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	96, 165
BslI	CCNNNNNNNGG	1 cut(s)	68
Bsp119I	TTCGAA	2 cut(s)	14, 252
BspACI	CCGC	3 cut(s)	57, 204, 225
BspCNI	CTCAG	2 cut(s)	97, 164
BspMI	ACCTGC	1 cut(s)	220
BspT104I	TTCGAA	2 cut(s)	14, 252
BsrBI	CCGCTC	1 cut(s)	204
Bst4CI	ACNGT	2 cut(s)	83, 249
BstBI	TTCGAA	2 cut(s)	14, 252
BstC8I	GCNNGC	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	105, 151
BstENI	CCTNNNNNAGG	1 cut(s)	66
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 178
BstNSI	RCATGY	1 cut(s)	48
BstPAI	GACNNNNGTC	1 cut(s)	153
BstV2I	GAAGAC	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	245
BveI	ACCTGC	1 cut(s)	220
Cac8I	GCNNGC	1 cut(s)	46
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	2 cut(s)	45, 158
CviJI	RGCY	1 cut(s)	172
CviKI_1	RGCY	1 cut(s)	172
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	2 cut(s)	105, 151
Eco47I	GGWCC	1 cut(s)	59
EcoNI	CCTNNNNNAGG	1 cut(s)	66
EcoRI	GAATTC	1 cut(s)	72
FaeI	CATG	2 cut(s)	48, 161
FaiI	YATR	6 cut(s)	21, 46, 111, 118, 138, 159
FalI	AAGNNNNNCTT	2 cut(s)	46, 78
FatI	CATG	2 cut(s)	44, 157
GsuI	CTGGAG	1 cut(s)	220
Hin1II	CATG	2 cut(s)	48, 161
HinfI	GANTC	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	83, 249
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 178
HpyF3I	CTNAG	2 cut(s)	105, 151
Hsp92II	CATG	2 cut(s)	48, 161
LmnI	GCTCC	2 cut(s)	86, 201
LpnPI	CCDG	3 cut(s)	138, 184, 225
MaeIII	GTNAC	3 cut(s)	100, 119, 127
MbiI	CCGCTC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	133
MluCI	AATT	5 cut(s)	72, 113, 182, 217, 235
MlyI	GAGTC	1 cut(s)	143
MnlI	CCTC	2 cut(s)	62, 89
MseI	TTAA	1 cut(s)	265
MwoI	GCNNNNNNNGC	2 cut(s)	54, 178
NlaIII	CATG	2 cut(s)	48, 161
NmuCI	GTSAC	1 cut(s)	119
NspI	RCATGY	1 cut(s)	48
NspV	TTCGAA	2 cut(s)	14, 252
PaeI	GCATGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
PshAI	GACNNNNGTC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	265
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	143
SetI	ASST	4 cut(s)	100, 157, 214, 232
SfuI	TTCGAA	2 cut(s)	14, 252
SgeI	CNNG	8 cut(s)	57, 80, 145, 165, 170, 202, 211, 224
SinI	GGWCC	1 cut(s)	59
SphI	GCATGC	1 cut(s)	48
Sse9I	AATT	5 cut(s)	72, 113, 182, 217, 235
SsiI	CCGC	3 cut(s)	57, 204, 225
TaaI	ACNGT	2 cut(s)	83, 249
TaqI	TCGA	3 cut(s)	14, 67, 252
TasI	AATT	5 cut(s)	72, 113, 182, 217, 235
Tru1I	TTAA	1 cut(s)	265
Tru9I	TTAA	1 cut(s)	265
TscAI	CASTG	1 cut(s)	252
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	126
TspRI	CASTG	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	59
XagI	CCTNNNNNAGG	1 cut(s)	66
XapI	RAATTY	1 cut(s)	72
XceI	RCATGY	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.