Prupe.3G033500_v2.0.a1

GDSL esterase lipase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000193
Physical Location & Seq
Forward (+)
2469912 .. 2471532
1621 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G033500.1

Sequence Viewer

Length: 1044 bp
ATGGCATCTTTCAGGTTTCAAATCTATATCTTGGCTTTCTGTGCAGGCCTTGTTATTCAAAGCAGCTGCCATGGCCATTCTGGGCTTCAGAAAAAACATGCAGCCCTGTTCATCTTTGGCGATTCACTCTATGATCCTGGAAATAATAACTACATAAATACCTCAAAAGGTTTACAGGCCAATTGGTTGCCATATGGTGAAACATTCTTCAGGTACCCAACTGGTAGATTTTCTAATGGGCGTTTAATCGCAGATTTCATTGCTGAGTATGCCAAGTTGCCATTTATACCAGCATATTTACAACCTGGGTTGAAAGACTATACTTATGGGGTGAACTTTGCTTCTGCTGGAGCTGGTGCTCTGGTGATAGACCTTAAAACTCAACGAAGTCAATTCAAGAAGGTGGAGAAGCAGTTGAGGAAGAAACTAGGTGAAGCAGAAGCCTACACATTGCTGTCCAAAGCTGTCTACTTAATCAGCATTGGAGGCAATGACTATTTTTCCCCATTAGCAACCAATACCAGCCATGAAGAATATGTTGGTTGGGTTATTGGCAACCTGACAAGTTGGATCAAAGATGTATACAAGAAAGGAGGCAGGAAATTTGGATTTTCAAACTTAGGCCCTTATGCTTCTACGCCAAGCATGAGATTTATTCAACCAGGAAACACAGGCCCTTCCCGGGAAGAAATTACAGCACTTGAGAATCTACACAACAGACTACTTTCCAAAGTCCTCACAAAGCTGAAGAAAGAGCTCCAAGGATTCAAATACTCAACGCTTAATCTCTACACTTACGCTAAAGAAAGAATTAATCATCCATCAAAATATGGTTTCAAGGAAGGAAAGGCGGCGTGCTGTGGCTCTGGTCCATATAGAGCAATTAATACCTGTGGAGGGAAGAGAGGTGTGACTGAGTATGAGTTATGTAACAATGTTACTGAGTACGTCTTCTTTGACTCTGCCCATGCAACTGAAAGGTTTTACGAGCAAGTGTCCAAGTTATGGTGGAGCCATAACTTGAAGGAGCTATTTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

348

Amino Acids

39.08

Weight (kDa)

9.33

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 1005
AccI GTMKAC 2 cut(s) 468, 582
AciI CCGC 1 cut(s) 851
AclWI GGATC 2 cut(s) 128, 578
AcoI YGGCCR 1 cut(s) 73
AcsI RAATTY 1 cut(s) 602
AcuI CTGAAG 3 cut(s) 71, 193, 767
AfaI GTAC 2 cut(s) 215, 947
AfiI CCNNNNNNNGG 3 cut(s) 682, 897, 1005
AjnI CCWGG 3 cut(s) 136, 304, 661
AjuI GAANNNNNNNTTGG 2 cut(s) 522, 554
AluBI AGCT 6 cut(s) 66, 353, 464, 745, 757, 1030
AluI AGCT 6 cut(s) 66, 353, 464, 745, 757, 1030
Alw21I GWGCWC 2 cut(s) 361, 759
AlwI GGATC 2 cut(s) 128, 578
Ama87I CYCGRG 1 cut(s) 681
AoxI GGCC 5 cut(s) 46, 73, 177, 622, 673
ApeKI GCWGC 3 cut(s) 63, 66, 101
ApoI RAATTY 1 cut(s) 602
AseI ATTAAT 2 cut(s) 813, 885
Asp718I GGTACC 1 cut(s) 213
AspS9I GGNCC 3 cut(s) 623, 674, 869
AsuC2I CCSGG 2 cut(s) 682, 683
AsuHPI GGTGA 4 cut(s) 209, 343, 376, 443
AvaI CYCGRG 1 cut(s) 681
AvaII GGWCC 1 cut(s) 869
BalI TGGCCA 1 cut(s) 75
BanI GGYRCC 1 cut(s) 213
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 943
Bbv12I GWGCWC 2 cut(s) 361, 759
BbvI GCAGC 3 cut(s) 53, 75, 113
BccI CCATC 1 cut(s) 829
BciT130I CCWGG 3 cut(s) 138, 306, 663
BcnI CCSGG 2 cut(s) 682, 683
BfaI CTAG 1 cut(s) 428
BisI GCNGC 4 cut(s) 64, 67, 102, 852
BlsI GCNGC 4 cut(s) 65, 68, 103, 853
Bme1390I CCNGG 5 cut(s) 138, 306, 663, 682, 683
Bme18I GGWCC 1 cut(s) 869
BmeT110I CYCGRG 1 cut(s) 681
BmgT120I GGNCC 3 cut(s) 623, 674, 869
BmiI GGNNCC 2 cut(s) 215, 1013
BmrFI CCNGG 5 cut(s) 138, 306, 663, 682, 683
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 1 cut(s) 943
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 1 cut(s) 722
BpuMI CCSGG 2 cut(s) 682, 683
BsaJI CCNNGG 4 cut(s) 70, 305, 681, 760
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 3 cut(s) 682, 897, 1005
Bse1I ACTGG 1 cut(s) 226
Bse3DI GCAATG 3 cut(s) 258, 449, 496
BseBI CCWGG 3 cut(s) 138, 306, 663
BseDI CCNNGG 4 cut(s) 70, 305, 681, 760
BseGI GGATG 1 cut(s) 817
BseLI CCNNNNNNNGG 3 cut(s) 682, 897, 1005
BseMI GCAATG 3 cut(s) 258, 449, 496
BseMII CTCAG 3 cut(s) 255, 906, 933
BseNI ACTGG 1 cut(s) 226
BseXI GCAGC 3 cut(s) 53, 75, 113
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 5 cut(s) 48, 75, 179, 624, 675
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 2 cut(s) 361, 759
BsiHKCI CYCGRG 1 cut(s) 681
BsiSI CCGG 1 cut(s) 682
BslI CCNNNNNNNGG 3 cut(s) 682, 897, 1005
BsnI GGCC 5 cut(s) 48, 75, 179, 624, 675
BsoBI CYCGRG 1 cut(s) 681
Bsp1286I GDGCHC 2 cut(s) 361, 759
Bsp143I GATC 2 cut(s) 133, 570
Bsp19I CCATGG 1 cut(s) 70
BspACI CCGC 1 cut(s) 851
BspANI GGCC 5 cut(s) 48, 75, 179, 624, 675
BspCNI CTCAG 3 cut(s) 256, 907, 934
BspLI GGNNCC 2 cut(s) 215, 1013
BspPI GGATC 2 cut(s) 128, 578
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 3 cut(s) 258, 449, 496
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 4 cut(s) 70, 305, 681, 760
BssMI GATC 2 cut(s) 133, 570
BssNAI GTATAC 1 cut(s) 583
BssT1I CCWWGG 2 cut(s) 70, 760
Bst1107I GTATAC 1 cut(s) 583
Bst2UI CCWGG 3 cut(s) 138, 306, 663
Bst6I CTCTTC 1 cut(s) 896
BstC8I GCNNGC 2 cut(s) 46, 856
BstDEI CTNAG 4 cut(s) 264, 619, 915, 942
BstDSI CCRYGG 1 cut(s) 70
BstF5I GGATG 1 cut(s) 817
BstKTI GATC 2 cut(s) 136, 573
BstMBI GATC 2 cut(s) 133, 570
BstMWI GCNNNNNNNGC 4 cut(s) 41, 72, 269, 486
BstNI CCWGG 3 cut(s) 138, 306, 663
BstNSI RCATGY 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 136, 304, 661, 680, 681
BstV1I GCAGC 3 cut(s) 53, 75, 113
BstV2I GAAGAC 1 cut(s) 943
BstZ17I GTATAC 1 cut(s) 583
BsuRI GGCC 5 cut(s) 48, 75, 179, 624, 675
BtgI CCRYGG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 817
Cac8I GCNNGC 2 cut(s) 46, 856
Cfr13I GGNCC 3 cut(s) 623, 674, 869
Cfr9I CCCGGG 1 cut(s) 681
Csp6I GTAC 2 cut(s) 214, 946
CviAII CATG 5 cut(s) 71, 98, 527, 646, 968
CviQI GTAC 2 cut(s) 214, 946
DdeI CTNAG 4 cut(s) 264, 619, 915, 942
DpnI GATC 2 cut(s) 135, 572
DpnII GATC 2 cut(s) 133, 570
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 1 cut(s) 896
EarI CTCTTC 1 cut(s) 896
Ecl136II GAGCTC 1 cut(s) 757
Eco130I CCWWGG 2 cut(s) 70, 760
Eco147I AGGCCT 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 3 cut(s) 71, 193, 767
Eco88I CYCGRG 1 cut(s) 681
EcoICRI GAGCTC 1 cut(s) 757
EcoO109I RGGNCCY 2 cut(s) 623, 674
EcoRII CCWGG 3 cut(s) 136, 304, 661
EcoT14I CCWWGG 2 cut(s) 70, 760
EcoT38I GRGCYC 1 cut(s) 759
ErhI CCWWGG 2 cut(s) 70, 760
FaeI CATG 5 cut(s) 74, 101, 530, 649, 971
FatI CATG 5 cut(s) 70, 97, 526, 645, 967
FauNDI CATATG 1 cut(s) 193
FblI GTMKAC 2 cut(s) 468, 582
Fnu4HI GCNGC 4 cut(s) 64, 67, 102, 852
FokI GGATG 1 cut(s) 804
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 4 cut(s) 64, 67, 102, 852
FspBI CTAG 1 cut(s) 428
GluI GCNGC 4 cut(s) 64, 67, 102, 852
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 5 cut(s) 48, 75, 179, 624, 675
HapII CCGG 1 cut(s) 682
Hin1II CATG 5 cut(s) 74, 101, 530, 649, 971
HinfI GANTC 4 cut(s) 122, 706, 765, 959
HpaII CCGG 1 cut(s) 682
HphI GGTGA 4 cut(s) 209, 343, 376, 443
Hpy166II GTNNAC 4 cut(s) 173, 334, 469, 583
Hpy188I TCNGA 1 cut(s) 90
Hpy188III TCNNGA 1 cut(s) 397
Hpy8I GTNNAC 4 cut(s) 173, 334, 469, 583
HpyAV CCTTC 4 cut(s) 394, 687, 836, 1018
HpyCH4IV ACGT 1 cut(s) 948
HpyCH4V TGCA 3 cut(s) 44, 101, 971
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 72, 269, 486
HpyF3I CTNAG 4 cut(s) 264, 619, 915, 942
HpySE526I ACGT 1 cut(s) 948
Hsp92II CATG 5 cut(s) 74, 101, 530, 649, 971
KpnI GGTACC 1 cut(s) 217
Kzo9I GATC 2 cut(s) 133, 570
LmnI GCTCC 4 cut(s) 350, 762, 1011, 1027
Lsp1109I GCAGC 3 cut(s) 53, 75, 113
LweI GCATC 1 cut(s) 14
MaeI CTAG 1 cut(s) 428
MaeII ACGT 1 cut(s) 948
MaeIII GTNAC 3 cut(s) 910, 929, 937
MalI GATC 2 cut(s) 135, 572
MboI GATC 2 cut(s) 133, 570
MboII GAAGA 7 cut(s) 199, 433, 542, 698, 760, 913, 943
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 2 cut(s) 361, 759
MlsI TGGCCA 1 cut(s) 75
MluCI AATT 6 cut(s) 181, 392, 602, 690, 810, 882
MluNI TGGCCA 1 cut(s) 75
MlyI GAGTC 1 cut(s) 953
MmeI TCCRAC 1 cut(s) 548
MnlI CCTC 7 cut(s) 172, 411, 479, 587, 746, 890, 899
Mox20I TGGCCA 1 cut(s) 75
MscI TGGCCA 1 cut(s) 75
MseI TTAA 6 cut(s) 245, 375, 473, 783, 813, 885
Msp20I TGGCCA 1 cut(s) 75
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 1 cut(s) 682
MspR9I CCNGG 5 cut(s) 138, 306, 663, 682, 683
MunI CAATTG 1 cut(s) 181
MvaI CCWGG 3 cut(s) 138, 306, 663
MwoI GCNNNNNNNGC 4 cut(s) 41, 72, 269, 486
NciI CCSGG 2 cut(s) 682, 683
NcoI CCATGG 1 cut(s) 70
NdeI CATATG 1 cut(s) 193
NdeII GATC 2 cut(s) 133, 570
NlaIII CATG 5 cut(s) 74, 101, 530, 649, 971
NlaIV GGNNCC 2 cut(s) 215, 1013
NmuCI GTSAC 1 cut(s) 910
NspI RCATGY 1 cut(s) 101
PceI AGGCCT 1 cut(s) 48
PfeI GAWTC 3 cut(s) 122, 706, 765
PflMI CCANNNNNTGG 1 cut(s) 1005
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 4 cut(s) 65, 68, 103, 853
PleI GAGTC 1 cut(s) 953
PpsI GAGTC 1 cut(s) 953
PshBI ATTAAT 2 cut(s) 813, 885
Psp124BI GAGCTC 1 cut(s) 759
Psp6I CCWGG 3 cut(s) 136, 304, 661
PspGI CCWGG 3 cut(s) 136, 304, 661
PspN4I GGNNCC 2 cut(s) 215, 1013
PspPI GGNCC 3 cut(s) 623, 674, 869
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 2 cut(s) 215, 947
RsaNI GTAC 2 cut(s) 214, 946
SacI GAGCTC 1 cut(s) 759
SaqAI TTAA 6 cut(s) 245, 375, 473, 783, 813, 885
SatI GCNGC 4 cut(s) 64, 67, 102, 852
Sau3AI GATC 2 cut(s) 133, 570
Sau96I GGNCC 3 cut(s) 623, 674, 869
SchI GAGTC 1 cut(s) 953
ScrFI CCNGG 5 cut(s) 138, 306, 663, 682, 683
SduI GDGCHC 2 cut(s) 361, 759
SfaNI GCATC 1 cut(s) 14
SinI GGWCC 1 cut(s) 869
SmaI CCCGGG 1 cut(s) 683
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 6 cut(s) 181, 392, 602, 690, 810, 882
SseBI AGGCCT 1 cut(s) 48
SsiI CCGC 1 cut(s) 851
SspMI CTAG 1 cut(s) 428
SstI GAGCTC 1 cut(s) 759
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 5 cut(s) 136, 304, 661, 680, 681
StyI CCWWGG 2 cut(s) 70, 760
TaiI ACGT 1 cut(s) 951
TasI AATT 6 cut(s) 181, 392, 602, 690, 810, 882
TauI GCSGC 1 cut(s) 854
TfiI GAWTC 3 cut(s) 122, 706, 765
Tru1I TTAA 6 cut(s) 245, 375, 473, 783, 813, 885
Tru9I TTAA 6 cut(s) 245, 375, 473, 783, 813, 885
TseFI GTSAC 1 cut(s) 910
TseI GCWGC 3 cut(s) 63, 66, 101
Tsp45I GTSAC 1 cut(s) 910
TspDTI ATGAA 3 cut(s) 100, 247, 543
TspMI CCCGGG 1 cut(s) 681
Van91I CCANNNNNTGG 1 cut(s) 1005
VpaK11BI GGWCC 1 cut(s) 869
VspI ATTAAT 2 cut(s) 813, 885
XapI RAATTY 1 cut(s) 602
XceI RCATGY 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 77
XmaI CCCGGG 1 cut(s) 681
XmiI GTMKAC 2 cut(s) 468, 582
XspI CTAG 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.