Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000193

Physical Location & Seq

Genomic Coordinates Reverse (-)

10258702 .. 10260468

Gene Structure 1767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG051700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCTAGCATTGTTATTCCAAGTAATTGCCTTGGTCACTTCTCTCTTGAAAAGGGGCACAAGCCTTTGTTTCTATTTGGGGATTCATTTTTTTGATGCCGGAAAGGCGGAAACAATAACTACATCAACACTACCAAGATTGCTCAGGCCAACTACTGGCCATATGGAGAAACCTATTTCGGGTACCCCACCGGGAGATTCAGCGATGGGCGTCAAATTCCAGATTTCATCGGTGATAGACCTTCAAACTCAGCTTAGTTATTTCAAAAATGTAGAAAAGCAATTGAGGCACAAACTAGGCTCTGCACAAGTCAAGACATTGCTTTCTACTGCTGTCTACCTTTTCAGCATCGGAAGCAATGATTATTTCGCCCCTCTGATCAGCGAGGAATTCTCATACTCGCAAGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0001101 GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0006629 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009627 GO:0009682 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009814 GO:0009817 GO:0009861 GO:0009866 GO:0009871 GO:0009873 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010646 GO:0010648 GO:0010928 GO:0010930 GO:0014070 GO:0016298 GO:0016787 GO:0016788 GO:0023051 GO:0023052 GO:0023057 GO:0031347 GO:0031349 GO:0032870 GO:0035556 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0044238 GO:0044421 GO:0045087 GO:0045088 GO:0045089 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071369 GO:0071495 GO:0071704 GO:0080134 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

7.86

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53940 AT1G53940 AT1G53970 AT1G53970 AT1G53990 AT3G14225 AT3G14225 AT5G40990
fragaria_vesca	FvH4_6g34510 FvH4_6g35571 FvH4_6g35571 FvH4_6g35572 FvH4_6g35580 FvH4_6g35580 FvH4_6g35584 FvH4_6g35600 FvH4_6g35610 FvH4_6g35630 FvH4_6g35631
malus_domestica	MD00G1137100.v1.1 MD01G1122400.v1.1 MD07G1191900.v1.1 MD09G1174600.v1.1 MD09G1174700.v1.1 MD09G1175100.v1.1 MD17G1151700.v1.1 MD17G1151800.v1.1
prunus_persica	Prupe.3G032700_v2.0.a1 Prupe.3G032900_v2.0.a1 Prupe.3G033100_v2.0.a1 Prupe.3G033200_v2.0.a1 Prupe.3G033300_v2.0.a1 Prupe.3G033400_v2.0.a1 Prupe.3G033500_v2.0.a1 Prupe.3G033600_v2.0.a1
pyrus_communis	pycom01g14930 pycom09g09170 pycom09g09180 pycom09g09190 pycom09g09220 pycom17g14510
rosa_chinensis	RchiOBHm_Chr2g0147161 RchiOBHm_Chr2g0147301 RchiOBHm_Chr2g0147311 RchiOBHm_Chr2g0147391 RchiOBHm_Chr2g0147431 RchiOBHm_Chr2g0147441 RchiOBHm_Chr2g0147471 RchiOBHm_Chr2g0147491 RchiOBHm_Chr2g0147591 RchiOBHm_Chr2g0147911 RchiOBHm_Chr2g0148061 RchiOBHm_Chr4g0407441 RchiOBHm_Chr4g0407471 RchiOBHm_Chr6g0252881 RchiOBHm_Chr7g0228391 RchiOBHm_Chr7g0228411
rosa_laevigata	RLG00000001566 RLG00000020247 RLG00000020250 RLG00000020251 RLG00000020252 RLG00000020255 RLG00000020258 RLG00000020261 RLG00000020262 RLG00000020264 RLG00000020293 RLG00000020307 RLG00000030814
rosa_multiflora	Rmu_co8112460.1_g000001 Rmu_co8353483.1_g000001 Rmu_co8492209.1_g000001 Rmu_sc0000308.1_g000061 Rmu_sc0000538.1_g000003 Rmu_sc0001159.1_g000017 Rmu_sc0001159.1_g000023 Rmu_sc0001159.1_g000050 Rmu_sc0001880.1_g000011 Rmu_sc0006302.1_g000003 Rmu_sc0008083.1_g000003 Rmu_sc0010661.1_g000002 Rmu_sc0017091.1_g000001 Rmu_sc0021146.1_g000001
rosa_roxburghii	Rroxscaffold_2G00099470 Rroxscaffold_2G00099500 Rroxscaffold_2G00099530 Rroxscaffold_2G00099590 Rroxscaffold_2G00113160 Rroxscaffold_2G00113180 Rroxscaffold_3G00231150 Rroxscaffold_4G00332370 Rroxscaffold_5G00352070
rosa_rugosa	Rorug02G0398800 Rorug02G0399100 Rorug02G0399200 Rorug02G0399300 Rorug02G0400100 Rorug02G0400200 Rorug02G0400300.1 Rorug02G0403000 Rorug05G0546600 Rorug05G0547200 Rorug07G0249100 Rorug07G0249200.1 RorugPtG0001700.1
rosa_samantha	Rh1CG003800 Rh2AG456000 Rh2AG456200 Rh2AG456400 Rh2AG456500 Rh2AG456900 Rh2AG457200 Rh2AG457500 Rh2AG457600 Rh2AG457700 Rh2AG460000 Rh2AG460400 Rh2BG468900 Rh2BG469000 Rh2BG469800 Rh2BG469900 Rh2BG470000 Rh2BG473300 Rh2BG473800 Rh2CG443400 Rh2CG443800 Rh2CG443900 Rh2CG444400 Rh2CG444600 Rh2CG445000 Rh2CG445100 Rh2CG447300 Rh2CG447600 Rh2DG478200 Rh2DG478300 Rh2DG479300 Rh2DG479500 Rh2DG482200 Rh4AG048300 Rh4CG051600 Rh4CG051700 Rh4CG151200 Rh7AG401800 Rh7CG420700 Rh7DG397900
rosa_wichuraiana	Rw2G037300 Rw2G037330 Rw2G037350 Rw2G037360 Rw2G037390 Rw2G037410 Rw2G037620 Rw4G003830 Rw6G005020 Rw6G005580 Rw7G033400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	182
AccB1I	GGYRCC	1 cut(s)	182
AccB7I	CCANNNNNTGG	1 cut(s)	155
AccI	GTMKAC	1 cut(s)	336
AciI	CCGC	1 cut(s)	107
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	215, 389
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	155, 179
AgsI	TTSAA	3 cut(s)	49, 245, 265
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AoxI	GGCC	2 cut(s)	146, 157
ApoI	RAATTY	2 cut(s)	215, 389
Asp718I	GGTACC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	1 cut(s)	244
AsuNHI	GCTAGC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	59
BalI	TGGCCA	1 cut(s)	159
BanI	GGYRCC	1 cut(s)	182
BccI	CCATC	1 cut(s)	199
BclI	TGATCA	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	192
BfaI	CTAG	2 cut(s)	5, 296
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	192
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	192
BmsI	GCATC	2 cut(s)	85, 357
BmtI	GCTAGC	1 cut(s)	8
BplI	GAGNNNNNCTC	2 cut(s)	377, 409
Bpu10I	CCTNAGC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	192
BsaHI	GRCGYC	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 179
Bse1I	ACTGG	1 cut(s)	160
Bse3DI	GCAATG	2 cut(s)	317, 364
BseDI	CCNNGG	1 cut(s)	30
BseLI	CCNNNNNNNGG	2 cut(s)	155, 179
BseMI	GCAATG	2 cut(s)	317, 364
BseMII	CTCAG	2 cut(s)	157, 263
BseNI	ACTGG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	288
BshFI	GGCC	2 cut(s)	148, 159
BshNI	GGYRCC	1 cut(s)	182
BsiSI	CCGG	2 cut(s)	99, 191
BslI	CCNNNNNNNGG	2 cut(s)	155, 179
BsnI	GGCC	2 cut(s)	148, 159
Bsp1286I	GDGCHC	1 cut(s)	59
Bsp143I	GATC	1 cut(s)	378
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	148, 159
BspCNI	CTCAG	2 cut(s)	156, 262
BspLI	GGNNCC	1 cut(s)	184
BspOI	GCTAGC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	317, 364
BsrI	ACTGG	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	1 cut(s)	378
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	1 cut(s)	30
BstACI	GRCGYC	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	143, 249, 254
BstKTI	GATC	1 cut(s)	381
BstMBI	GATC	1 cut(s)	378
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 286, 354
BstSCI	CCNGG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	148, 159
BtgZI	GCGATG	1 cut(s)	218
Cac8I	GCNNGC	1 cut(s)	6
CseI	GACGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	183
CviJI	RGCY	5 cut(s)	63, 148, 159, 253, 300
CviKI_1	RGCY	5 cut(s)	63, 148, 159, 253, 300
CviQI	GTAC	1 cut(s)	183
DdeI	CTNAG	3 cut(s)	143, 249, 254
DpnI	GATC	1 cut(s)	380
DpnII	GATC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	157
EciI	GGCGGA	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	30
EcoRI	GAATTC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	30
FaiI	YATR	3 cut(s)	162, 164, 397
FauNDI	CATATG	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	378
FblI	GTMKAC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	5, 296
HaeIII	GGCC	2 cut(s)	148, 159
HapII	CCGG	2 cut(s)	99, 191
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	210
HinfI	GANTC	2 cut(s)	82, 197
HpaII	CCGG	2 cut(s)	99, 191
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	353, 378
Hpy188III	TCNNGA	3 cut(s)	46, 220, 313
Hpy8I	GTNNAC	1 cut(s)	337
HpyAV	CCTTC	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	305
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 286, 354
HpyF3I	CTNAG	3 cut(s)	143, 249, 254
Hsp92I	GRCGYC	1 cut(s)	210
KpnI	GGTACC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	378
Kzo9I	GATC	1 cut(s)	378
LpnPI	CCDG	5 cut(s)	112, 130, 141, 204, 233
LweI	GCATC	2 cut(s)	85, 357
MaeI	CTAG	2 cut(s)	5, 296
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	1 cut(s)	380
MboI	GATC	1 cut(s)	378
MfeI	CAATTG	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	59
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	4 cut(s)	24, 215, 281, 389
MluNI	TGGCCA	1 cut(s)	159
MnlI	CCTC	3 cut(s)	279, 379, 384
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	159
MspI	CCGG	2 cut(s)	99, 191
MspR9I	CCNGG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	281
MwoI	GCNNNNNNNGC	3 cut(s)	104, 286, 354
NciI	CCSGG	1 cut(s)	192
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	1 cut(s)	378
NheI	GCTAGC	1 cut(s)	4
NlaIV	GGNNCC	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	34
PfeI	GAWTC	2 cut(s)	82, 197
PflMI	CCANNNNNTGG	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	184
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
Sau3AI	GATC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	192
SduI	GDGCHC	1 cut(s)	59
SetI	ASST	4 cut(s)	175, 243, 255, 342
SfaNI	GCATC	2 cut(s)	85, 357
Sse9I	AATT	4 cut(s)	24, 215, 281, 389
SsiI	CCGC	1 cut(s)	107
SspMI	CTAG	2 cut(s)	5, 296
StyD4I	CCNGG	1 cut(s)	190
StyI	CCWWGG	1 cut(s)	30
TasI	AATT	4 cut(s)	24, 215, 281, 389
TfiI	GAWTC	2 cut(s)	82, 197
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	74, 216
Van91I	CCANNNNNTGG	1 cut(s)	155
XapI	RAATTY	2 cut(s)	215, 389
XmiI	GTMKAC	1 cut(s)	336
XspI	CTAG	2 cut(s)	5, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.